Wall clock time and date at job start Wed Apr 1 2020 03:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46898 * 109.47386 * 64.99548 * 4 2 1 6 6 C 1.46901 * 111.00283 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47433 * 180.02562 * 6 5 4 8 8 O 1.21302 * 119.99547 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00406 * 180.02562 * 7 6 5 10 10 C 1.37093 * 120.00294 * 179.97438 * 9 7 6 11 11 H 1.07998 * 120.00185 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99914 * 179.97438 * 10 9 7 13 13 N 1.31413 * 119.99838 * 179.97438 * 12 10 9 14 14 Si 1.86793 * 120.00170 * 0.02562 * 12 10 9 15 15 H 1.48503 * 109.47171 * 89.99745 * 14 12 10 16 16 H 1.48497 * 109.47456 * 209.99276 * 14 12 10 17 17 H 1.48496 * 109.47254 * 329.99650 * 14 12 10 18 18 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 19 19 N 1.46505 * 109.47119 * 294.99950 * 18 2 1 20 20 C 1.34773 * 119.99820 * 180.02562 * 19 18 2 21 21 O 1.21279 * 120.00339 * 0.02562 * 20 19 18 22 22 C 1.50700 * 119.99583 * 180.02562 * 20 19 18 23 23 H 1.08994 * 112.83297 * 48.88756 * 22 20 19 24 24 C 1.53523 * 113.58428 * 180.02562 * 22 20 19 25 25 C 1.51617 * 87.24698 * 114.59160 * 24 22 20 26 26 C 1.38363 * 147.52711 * 180.02562 * 25 24 22 27 27 C 1.38096 * 120.32876 * 180.02562 * 26 25 24 28 28 C 1.38251 * 119.95430 * 359.97438 * 27 26 25 29 29 C 1.38096 * 119.95237 * 0.02562 * 28 27 26 30 30 C 1.38373 * 120.32871 * 0.02562 * 29 28 27 31 31 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 32 32 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 34 34 H 1.09004 * 109.47346 * 184.99897 * 4 2 1 35 35 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 36 36 H 1.00907 * 111.00007 * 56.04410 * 5 4 2 37 37 H 1.09002 * 109.46761 * 300.00031 * 6 5 4 38 38 H 1.08993 * 109.46846 * 60.00149 * 6 5 4 39 39 H 0.97003 * 119.99386 * 359.97438 * 9 7 6 40 40 H 0.97002 * 120.00104 * 179.97438 * 13 12 10 41 41 H 1.08994 * 109.47065 * 55.00225 * 18 2 1 42 42 H 1.09000 * 109.46818 * 175.00170 * 18 2 1 43 43 H 0.97003 * 119.99621 * 0.02562 * 19 18 2 44 44 H 1.09002 * 113.58815 * 229.17732 * 24 22 20 45 45 H 1.09001 * 113.59170 * 359.91834 * 24 22 20 46 46 H 1.08002 * 119.83771 * 359.97438 * 26 25 24 47 47 H 1.08000 * 120.02490 * 179.97438 * 27 26 25 48 48 H 1.07994 * 120.02349 * 180.02562 * 28 27 26 49 49 H 1.07999 * 119.83895 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 1.6514 0.0375 -2.4456 6 6 2.1247 -0.6270 -3.6673 7 6 1.7087 0.1788 -4.8709 8 8 1.0793 1.2055 -4.7253 9 7 2.0350 -0.2417 -6.1091 10 6 1.6561 0.4910 -7.2040 11 1 1.0965 1.4056 -7.0745 12 6 1.9931 0.0577 -8.4805 13 7 1.6294 0.7598 -9.5301 14 14 2.9617 -1.5237 -8.7046 15 1 2.0216 -2.6659 -8.8344 16 1 3.7932 -1.4254 -9.9311 17 1 3.8404 -1.7372 -7.5267 18 6 2.0401 -0.7213 1.2492 19 7 1.6525 0.0353 2.4424 20 6 1.9965 -0.4132 3.6659 21 8 2.6273 -1.4428 3.7791 22 6 1.5973 0.3648 4.8932 23 1 0.5432 0.6419 4.8940 24 6 2.0650 -0.2777 6.2068 25 6 2.9527 0.9362 6.3994 26 6 3.8838 1.5880 7.1884 27 6 4.3921 2.8120 6.8003 28 6 3.9705 3.3910 5.6177 29 6 3.0414 2.7447 4.8265 30 6 2.5281 1.5186 5.2112 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.1264 -0.7994 -1.2057 35 1 1.6055 -1.7197 -1.2952 36 1 1.9881 0.9875 -2.3966 37 1 3.2116 -0.7048 -3.6406 38 1 1.6904 -1.6247 -3.7297 39 1 2.5381 -1.0629 -6.2254 40 1 1.8649 0.4575 -10.4212 41 1 1.6055 -1.7198 1.2950 42 1 3.1264 -0.7994 1.2055 43 1 1.1483 0.8590 2.3518 44 1 1.2768 -0.3647 6.9546 45 1 2.6183 -1.2062 6.0655 46 1 4.2142 1.1378 8.1128 47 1 5.1184 3.3167 7.4201 48 1 4.3676 4.3479 5.3130 49 1 2.7136 3.1984 3.9029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732358312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:01 Heat of formation + Delta-G solvation = -12.212704 kcal Electronic energy + Delta-G solvation = -28270.433488 eV Core-core repulsion = 24198.368604 eV Total energy + Delta-G solvation = -4072.064884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.35667 -39.44488 -38.55333 -37.34112 -35.62484 -34.97932 -33.92945 -32.45768 -31.64931 -31.21612 -28.34782 -27.59070 -27.06223 -25.53475 -24.49803 -23.07382 -22.37785 -21.34575 -20.81884 -19.99070 -19.34421 -18.34467 -17.76311 -17.15872 -16.56587 -16.03356 -15.89391 -15.64898 -15.46570 -15.12000 -14.89733 -14.82225 -14.37933 -14.27411 -13.71950 -13.53427 -13.43433 -13.28943 -13.19007 -12.95563 -12.67875 -12.61489 -12.47389 -12.34528 -12.09551 -12.04349 -11.81875 -11.43679 -11.26013 -11.14171 -11.10002 -10.97759 -10.93573 -10.60371 -10.32893 -9.98631 -9.58292 -9.40052 -9.26761 -8.99374 -8.60869 -8.20728 -8.15339 -6.32186 -3.83670 0.82652 0.96128 2.20856 2.77109 3.01836 3.06412 3.14555 3.33108 3.67659 3.72884 3.92368 3.95318 4.05089 4.09993 4.40800 4.62747 4.63805 4.65324 4.69908 4.74576 4.81098 4.98039 5.12802 5.17585 5.20895 5.25752 5.26700 5.38313 5.41934 5.50311 5.54667 5.59566 5.60606 5.65443 5.76128 5.79834 5.82740 5.92461 5.94992 6.00912 6.07072 6.15241 6.24869 6.33805 6.53066 7.05257 7.11980 7.53639 7.57336 7.84396 8.13355 8.58650 8.93836 9.41393 9.81528 10.80904 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022423 B = 0.001494 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.390399 B =18741.569919 C =19156.989220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.666 5.666 6 C 0.048 3.952 7 C 0.450 3.550 8 O -0.565 6.565 9 N -0.590 5.590 10 C -0.306 4.306 11 H 0.120 0.880 12 C 0.042 3.958 13 N -0.881 5.881 14 Si 0.880 3.120 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.124 3.876 19 N -0.722 5.722 20 C 0.530 3.470 21 O -0.534 6.534 22 C -0.068 4.068 23 H 0.122 0.878 24 C -0.057 4.057 25 C -0.118 4.118 26 C -0.098 4.098 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.085 4.085 30 C -0.128 4.128 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.044 0.956 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.350 0.650 37 H 0.044 0.956 38 H 0.087 0.913 39 H 0.371 0.629 40 H 0.273 0.727 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.402 0.598 44 H 0.098 0.902 45 H 0.109 0.891 46 H 0.120 0.880 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.197 -1.172 33.668 33.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.298 5.298 6 C -0.085 4.085 7 C 0.235 3.765 8 O -0.447 6.447 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.161 4.161 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.000 4.000 19 N -0.373 5.373 20 C 0.316 3.684 21 O -0.411 6.411 22 C -0.089 4.089 23 H 0.139 0.861 24 C -0.094 4.094 25 C -0.118 4.118 26 C -0.116 4.116 27 C -0.129 4.129 28 C -0.138 4.138 29 C -0.103 4.103 30 C -0.128 4.128 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.169 0.831 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.203 0.797 40 H 0.084 0.916 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.237 0.763 44 H 0.116 0.884 45 H 0.128 0.872 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.604 -1.466 33.538 33.671 hybrid contribution 1.558 -0.533 -0.527 1.729 sum 4.162 -1.999 33.012 33.333 Atomic orbital electron populations 1.21765 0.93615 1.02216 1.02180 1.21342 0.97704 0.99981 0.92874 0.90467 1.21898 0.97363 0.97975 0.89184 1.60023 1.64174 1.05922 0.99699 1.21700 0.97839 0.98704 0.90221 1.19710 0.85229 0.87881 0.83631 1.90563 1.42845 1.25882 1.85433 1.42207 1.50992 1.23783 1.06004 1.19432 1.33614 1.07731 0.82667 0.86287 1.25038 0.97851 0.98088 0.95158 1.69623 1.45675 1.38440 0.98371 0.86666 0.80422 0.83704 0.78553 1.19584 1.20187 1.19541 1.21423 1.00066 0.95470 0.83070 1.45964 1.57753 1.27900 1.05704 1.20015 0.79161 0.85162 0.84107 1.90709 1.39474 1.24459 1.86456 1.21541 1.00359 0.92780 0.94256 0.86056 1.21818 0.97105 0.96501 0.93928 1.22213 0.96584 0.97260 0.95763 1.20320 0.96617 0.94936 0.99702 1.21063 0.99797 0.95162 0.96893 1.21025 0.97608 1.00196 0.94963 1.20351 0.96683 0.93432 0.99848 1.21691 0.99014 0.94708 0.97414 0.90350 0.92743 0.93656 0.95244 0.90672 0.83061 0.93768 0.89437 0.79679 0.91609 0.91046 0.91479 0.76281 0.88406 0.87242 0.86204 0.85469 0.85370 0.86166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 8.95 37.16 0.33 -0.96 16 2 C -0.10 -0.88 2.57 -90.62 -0.23 -1.12 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.07 0.71 5.07 -3.83 -0.02 0.69 16 5 N -0.67 -9.63 5.58 -115.06 -0.64 -10.27 16 6 C 0.05 0.77 6.17 -4.97 -0.03 0.74 16 7 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 8 O -0.57 -14.96 15.78 5.54 0.09 -14.87 16 9 N -0.59 -13.98 5.09 -10.96 -0.06 -14.03 16 10 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 11 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 12 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 13 N -0.88 -25.68 13.96 55.50 0.77 -24.90 16 14 Si 0.88 19.32 27.74 -169.99 -4.71 14.60 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 18 C 0.12 1.09 5.06 -4.04 -0.02 1.07 16 19 N -0.72 -5.71 5.28 -60.30 -0.32 -6.03 16 20 C 0.53 5.12 7.37 -10.99 -0.08 5.04 16 21 O -0.53 -7.18 15.70 5.56 0.09 -7.10 16 22 C -0.07 -0.49 4.33 -92.22 -0.40 -0.89 16 23 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 24 C -0.06 -0.40 7.77 -27.18 -0.21 -0.61 16 25 C -0.12 -0.98 7.49 -103.87 -0.78 -1.76 16 26 C -0.10 -0.73 10.03 -39.59 -0.40 -1.13 16 27 C -0.11 -0.75 10.04 -39.63 -0.40 -1.15 16 28 C -0.12 -0.83 10.04 -39.63 -0.40 -1.23 16 29 C -0.09 -0.65 10.03 -39.58 -0.40 -1.05 16 30 C -0.13 -1.05 6.98 -103.87 -0.72 -1.77 16 31 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.34 7.18 -51.93 -0.37 -0.04 16 34 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.35 5.26 8.43 -39.29 -0.33 4.93 16 37 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.37 7.70 5.76 -40.82 -0.24 7.46 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.40 2.32 7.65 -40.82 -0.31 2.01 16 44 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.11 0.93 7.04 -51.93 -0.37 0.56 16 46 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 48 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 49 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 408.41 15.07 6.15 6.15 Total: -1.00 -35.16 408.41 -10.21 -45.37 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.50 Total: 12.97 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.09 Total: -1.90 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.24 Total: -55.24 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.17 Total: -21.97 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.16 -10.21 -45.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732358312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.160 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds