Wall clock time and date at job start Wed Apr 1 2020 05:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47157 * 2 1 4 4 C 1.34772 * 119.99819 * 179.72407 * 3 2 1 5 5 O 1.21281 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99695 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46861 * 179.97438 * 6 4 3 8 8 C 1.46893 * 111.00157 * 294.30176 * 7 6 4 9 9 C 1.53242 * 109.34222 * 172.74561 * 8 7 6 10 10 N 1.47084 * 108.51622 * 53.83115 * 9 8 7 11 11 C 1.34778 * 120.87897 * 128.83898 * 10 9 8 12 12 O 1.21553 * 119.99942 * 353.86461 * 11 10 9 13 13 C 1.47878 * 119.99831 * 173.85677 * 11 10 9 14 14 C 1.39916 * 120.03216 * 328.34254 * 13 11 10 15 15 C 1.38330 * 120.36257 * 179.71287 * 14 13 11 16 16 C 1.37750 * 120.41024 * 0.56012 * 15 14 13 17 17 C 1.40748 * 120.04073 * 359.72041 * 16 15 14 18 18 C 1.41435 * 120.18099 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00055 * 149.29141 * 18 17 16 20 20 C 1.39943 * 119.99542 * 329.30018 * 18 17 16 21 21 N 1.30824 * 119.99659 * 164.87800 * 20 18 17 22 22 Si 1.86800 * 120.00167 * 344.86954 * 20 18 17 23 23 H 1.48504 * 109.46710 * 93.44984 * 22 20 18 24 24 H 1.48500 * 109.47052 * 213.44532 * 22 20 18 25 25 H 1.48502 * 109.47139 * 333.44976 * 22 20 18 26 26 C 1.39005 * 120.02238 * 148.61470 * 13 11 10 27 27 C 1.47081 * 118.23933 * 308.81516 * 10 9 8 28 28 C 1.46901 * 110.99582 * 170.00250 * 7 6 4 29 29 H 1.09001 * 109.46916 * 59.99964 * 1 2 3 30 30 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46917 * 299.99790 * 1 2 3 32 32 H 1.08997 * 109.46718 * 240.00194 * 2 1 3 33 33 H 1.09001 * 109.46916 * 120.00036 * 2 1 3 34 34 H 0.97002 * 119.99948 * 0.02562 * 3 2 1 35 35 H 1.08988 * 109.47363 * 300.00408 * 6 4 3 36 36 H 1.09004 * 109.47228 * 60.00549 * 6 4 3 37 37 H 1.08999 * 109.49516 * 292.70719 * 8 7 6 38 38 H 1.09005 * 109.49708 * 52.79093 * 8 7 6 39 39 H 1.09001 * 109.62836 * 294.12824 * 9 8 7 40 40 H 1.09000 * 109.63465 * 173.54095 * 9 8 7 41 41 H 1.08008 * 119.81384 * 359.97146 * 14 13 11 42 42 H 1.08001 * 119.79082 * 180.25665 * 15 14 13 43 43 H 1.07999 * 119.97880 * 179.69078 * 16 15 14 44 44 H 0.97001 * 120.00054 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.20062 * 0.02562 * 26 13 11 46 46 H 1.09003 * 109.62393 * 291.47681 * 27 10 9 47 47 H 1.08994 * 109.78732 * 170.99206 * 27 10 9 48 48 H 1.08996 * 109.49650 * 307.20860 * 28 7 6 49 49 H 1.08997 * 109.49277 * 67.29759 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0056 5 8 4.1315 0.7056 0.0111 6 6 3.8458 3.0483 0.0050 7 7 5.3148 3.0482 0.0124 8 6 5.8349 2.4866 1.2662 9 6 7.3564 2.3365 1.1624 10 7 7.9288 3.6357 0.7782 11 6 8.9442 4.1786 1.4788 12 8 9.3251 3.6504 2.5052 13 6 9.5952 5.4165 0.9986 14 6 9.6839 5.6740 -0.3738 15 6 10.2860 6.8326 -0.8304 16 6 10.8154 7.7408 0.0599 17 6 10.7408 7.4962 1.4440 18 6 11.2830 8.4268 2.3607 19 1 10.8417 8.5400 3.3398 20 6 12.3911 9.2011 1.9988 21 7 12.7126 10.2537 2.7060 22 14 13.4112 8.7316 0.5060 23 1 12.9135 9.4665 -0.6846 24 1 14.8332 9.0851 0.7472 25 1 13.2977 7.2701 0.2687 26 6 10.1244 6.3226 1.9102 27 6 7.3642 4.3267 -0.3910 28 6 5.8423 4.3984 -0.2260 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4865 3.5603 -0.8875 36 1 3.4784 3.5639 0.8924 37 1 5.5908 3.1540 2.0926 38 1 5.3842 1.5097 1.4418 39 1 7.6000 1.5909 0.4054 40 1 7.7607 2.0290 2.1267 41 1 9.2762 4.9661 -1.0805 42 1 10.3458 7.0241 -1.8916 43 1 11.2884 8.6407 -0.3044 44 1 13.4809 10.7902 2.4555 45 1 10.0625 6.1257 2.9702 46 1 7.6086 3.7723 -1.2971 47 1 7.7732 5.3348 -0.4570 48 1 5.3972 4.8080 -1.1326 49 1 5.5982 5.0391 0.6213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049651283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:08 Heat of formation + Delta-G solvation = -25.633925 kcal Electronic energy + Delta-G solvation = -29880.442098 eV Core-core repulsion = 25807.795226 eV Total energy + Delta-G solvation = -4072.646872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.45033 -39.73160 -37.93211 -37.13855 -35.62724 -34.47614 -33.65997 -31.65888 -31.25233 -30.36997 -30.02527 -28.77075 -25.60249 -25.43452 -23.77450 -23.21870 -22.62543 -21.01531 -20.73563 -20.68197 -19.06820 -17.67755 -17.34244 -16.63036 -16.19963 -16.13652 -15.95357 -15.48983 -15.18400 -15.11220 -14.82799 -14.74252 -14.55018 -14.20152 -13.73131 -13.65319 -13.42037 -12.98457 -12.90738 -12.78161 -12.59578 -12.46477 -12.31847 -12.14565 -11.97370 -11.92147 -11.57221 -11.33634 -11.15793 -11.07471 -11.02667 -10.75635 -10.52315 -10.04790 -9.94259 -9.71853 -9.46410 -9.43228 -9.03714 -8.69778 -8.29007 -7.87020 -7.71383 -6.99575 -4.56637 1.97681 2.36217 2.48549 2.69167 3.05299 3.17986 3.26522 3.27033 3.50284 3.77296 3.93422 4.36224 4.43963 4.58525 4.60680 4.73546 4.85537 4.89571 4.90725 4.97262 5.19350 5.25051 5.27854 5.33771 5.34453 5.43286 5.45075 5.55291 5.64286 5.76438 5.85052 5.91154 5.92253 6.06235 6.06692 6.10482 6.34817 6.61313 6.63030 6.66117 6.76029 6.86221 6.98698 7.14311 7.21670 7.38180 7.48407 7.71790 7.74301 7.94329 7.95835 8.26775 8.51120 8.65897 8.71049 10.02662 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.002016 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.636958 B =13887.044038 C =14051.549640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.512 3.488 5 O -0.517 6.517 6 C 0.036 3.964 7 N -0.521 5.521 8 C 0.039 3.961 9 C 0.121 3.879 10 N -0.615 5.615 11 C 0.566 3.434 12 O -0.547 6.547 13 C -0.103 4.103 14 C -0.225 4.225 15 C -0.082 4.082 16 C -0.224 4.224 17 C 0.084 3.916 18 C -0.442 4.442 19 H 0.093 0.907 20 C 0.082 3.918 21 N -0.807 5.807 22 Si 0.913 3.087 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.243 1.243 26 C -0.140 4.140 27 C 0.099 3.901 28 C 0.040 3.960 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.033 0.967 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.286 0.714 45 H 0.111 0.889 46 H 0.072 0.928 47 H 0.122 0.878 48 H 0.087 0.913 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.138 -12.557 -8.631 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.392 5.392 4 C 0.298 3.702 5 O -0.392 6.392 6 C -0.095 4.095 7 N -0.246 5.246 8 C -0.089 4.089 9 C -0.002 4.002 10 N -0.350 5.350 11 C 0.358 3.642 12 O -0.425 6.425 13 C -0.106 4.106 14 C -0.245 4.245 15 C -0.101 4.101 16 C -0.243 4.243 17 C 0.081 3.919 18 C -0.470 4.470 19 H 0.111 0.889 20 C -0.137 4.137 21 N -0.431 5.431 22 Si 0.739 3.261 23 H -0.196 1.196 24 H -0.218 1.218 25 H -0.166 1.166 26 C -0.160 4.160 27 C -0.024 4.024 28 C -0.088 4.088 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.233 0.767 35 H 0.123 0.877 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.118 0.882 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.128 0.872 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.097 0.903 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.140 0.860 48 H 0.105 0.895 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.023 -13.599 -8.330 26.387 hybrid contribution -0.242 0.876 -0.043 0.910 sum -21.265 -12.723 -8.373 26.157 Atomic orbital electron populations 1.22009 0.94448 1.03292 1.02513 1.21276 0.94155 0.82985 1.02458 1.46072 1.07194 1.08947 1.76952 1.20628 0.81966 0.91668 0.75945 1.90700 1.54891 1.46127 1.47474 1.21957 0.90399 0.93916 1.03276 1.61663 1.04601 1.22277 1.36071 1.22653 0.96045 1.01119 0.89056 1.21568 0.91342 0.85118 1.02155 1.48026 1.35258 1.21097 1.30581 1.18897 0.78610 0.84314 0.82397 1.90697 1.64184 1.63538 1.24122 1.19400 1.02285 0.94378 0.94560 1.20704 1.10396 0.99996 0.93388 1.20536 0.97567 0.94227 0.97742 1.21193 1.08487 1.00766 0.93866 1.17692 0.91153 0.91028 0.92018 1.19515 1.11287 1.14385 1.01842 0.88930 1.26159 0.97654 0.92356 0.97492 1.69663 1.24418 1.11274 1.37726 0.86299 0.77330 0.82053 0.80390 1.19575 1.21772 1.16635 1.21197 1.03231 0.93618 0.97989 1.22478 0.91205 1.00560 0.88193 1.22627 0.96438 0.88369 1.01413 0.91949 0.90772 0.91974 0.91480 0.91557 0.76675 0.87672 0.91887 0.94829 0.88204 0.90926 0.88851 0.87246 0.88175 0.87864 0.90320 0.87101 0.90969 0.86002 0.89460 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.03 37.16 0.37 -0.15 16 2 C 0.11 0.68 6.39 -4.04 -0.03 0.66 16 3 N -0.74 -4.56 5.56 -60.29 -0.33 -4.90 16 4 C 0.51 4.86 7.49 -10.99 -0.08 4.78 16 5 O -0.52 -7.09 14.33 5.56 0.08 -7.01 16 6 C 0.04 0.29 5.45 -4.97 -0.03 0.26 16 7 N -0.52 -5.88 4.37 -235.77 -1.03 -6.91 16 8 C 0.04 0.50 5.25 -3.70 -0.02 0.49 16 9 C 0.12 1.79 6.61 -3.60 -0.02 1.77 16 10 N -0.62 -10.08 3.01 -173.55 -0.52 -10.61 16 11 C 0.57 11.59 7.43 -12.31 -0.09 11.50 16 12 O -0.55 -12.83 16.19 5.32 0.09 -12.74 16 13 C -0.10 -2.21 5.38 -105.04 -0.57 -2.78 16 14 C -0.23 -4.32 7.40 -38.92 -0.29 -4.60 16 15 C -0.08 -1.64 10.01 -39.73 -0.40 -2.04 16 16 C -0.22 -5.13 7.09 -38.81 -0.28 -5.41 16 17 C 0.08 2.10 5.11 -106.87 -0.55 1.55 16 18 C -0.44 -11.83 9.59 -37.73 -0.36 -12.19 16 19 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 20 C 0.08 2.13 5.44 -17.34 -0.09 2.04 16 21 N -0.81 -21.25 13.93 55.55 0.77 -20.47 16 22 Si 0.91 20.50 24.45 -169.99 -4.16 16.34 16 23 H -0.27 -5.77 6.66 56.52 0.38 -5.39 16 24 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.24 -5.65 6.80 56.52 0.38 -5.27 16 26 C -0.14 -3.36 9.34 -38.44 -0.36 -3.72 16 27 C 0.10 1.31 4.84 -3.60 -0.02 1.29 16 28 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.40 1.30 8.47 -40.82 -0.35 0.96 16 35 H 0.11 0.61 7.97 -51.94 -0.41 0.20 16 36 H 0.06 0.44 8.12 -51.93 -0.42 0.01 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.31 5.77 -51.93 -0.30 1.01 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.49 7.04 -51.93 -0.37 1.12 16 41 H 0.11 1.78 5.61 -52.48 -0.29 1.48 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.10 2.35 4.55 -52.49 -0.24 2.11 16 44 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 45 H 0.11 2.72 7.94 -52.49 -0.42 2.30 16 46 H 0.07 0.90 7.93 -51.93 -0.41 0.49 16 47 H 0.12 1.74 4.49 -51.93 -0.23 1.50 16 48 H 0.09 0.73 7.99 -51.93 -0.41 0.32 16 49 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -32.33 386.31 -9.37 -41.70 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.26 Total: 4.92 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -2.82 Total: -6.14 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: -1.11 Total: -42.89 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.17 Total: -19.75 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.16 Total: 16.34 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.33 -9.37 -41.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049651283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.067 kcal (2) G-P(sol) polarization free energy of solvation -32.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds