Wall clock time and date at job start Wed Apr 1 2020 05:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47157 * 2 1 4 4 C 1.34772 * 119.99819 * 179.72407 * 3 2 1 5 5 O 1.21281 * 120.00053 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99695 * 179.97438 * 4 3 2 7 7 N 1.46902 * 109.46861 * 179.97438 * 6 4 3 8 8 C 1.46893 * 111.00157 * 294.30176 * 7 6 4 9 9 C 1.53242 * 109.34222 * 172.74561 * 8 7 6 10 10 N 1.47084 * 108.51622 * 53.83115 * 9 8 7 11 11 C 1.34778 * 120.87897 * 128.83898 * 10 9 8 12 12 O 1.21553 * 119.99942 * 353.86461 * 11 10 9 13 13 C 1.47878 * 119.99831 * 173.85677 * 11 10 9 14 14 C 1.39916 * 120.03216 * 328.34254 * 13 11 10 15 15 C 1.38330 * 120.36257 * 179.71287 * 14 13 11 16 16 C 1.37750 * 120.41024 * 0.56012 * 15 14 13 17 17 C 1.40748 * 120.04073 * 359.72041 * 16 15 14 18 18 C 1.41435 * 120.18099 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00055 * 149.29141 * 18 17 16 20 20 C 1.39943 * 119.99542 * 329.30018 * 18 17 16 21 21 N 1.30824 * 119.99659 * 164.87800 * 20 18 17 22 22 Si 1.86800 * 120.00167 * 344.86954 * 20 18 17 23 23 H 1.48504 * 109.46710 * 93.44984 * 22 20 18 24 24 H 1.48500 * 109.47052 * 213.44532 * 22 20 18 25 25 H 1.48502 * 109.47139 * 333.44976 * 22 20 18 26 26 C 1.39005 * 120.02238 * 148.61470 * 13 11 10 27 27 C 1.47081 * 118.23933 * 308.81516 * 10 9 8 28 28 C 1.46901 * 110.99582 * 170.00250 * 7 6 4 29 29 H 1.09001 * 109.46916 * 59.99964 * 1 2 3 30 30 H 1.09000 * 109.46750 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46917 * 299.99790 * 1 2 3 32 32 H 1.08997 * 109.46718 * 240.00194 * 2 1 3 33 33 H 1.09001 * 109.46916 * 120.00036 * 2 1 3 34 34 H 0.97002 * 119.99948 * 0.02562 * 3 2 1 35 35 H 1.08988 * 109.47363 * 300.00408 * 6 4 3 36 36 H 1.09004 * 109.47228 * 60.00549 * 6 4 3 37 37 H 1.08999 * 109.49516 * 292.70719 * 8 7 6 38 38 H 1.09005 * 109.49708 * 52.79093 * 8 7 6 39 39 H 1.09001 * 109.62836 * 294.12824 * 9 8 7 40 40 H 1.09000 * 109.63465 * 173.54095 * 9 8 7 41 41 H 1.08008 * 119.81384 * 359.97146 * 14 13 11 42 42 H 1.08001 * 119.79082 * 180.25665 * 15 14 13 43 43 H 1.07999 * 119.97880 * 179.69078 * 16 15 14 44 44 H 0.97001 * 120.00054 * 179.97438 * 21 20 18 45 45 H 1.07995 * 120.20062 * 0.02562 * 26 13 11 46 46 H 1.09003 * 109.62393 * 291.47681 * 27 10 9 47 47 H 1.08994 * 109.78732 * 170.99206 * 27 10 9 48 48 H 1.08996 * 109.49650 * 307.20860 * 28 7 6 49 49 H 1.08997 * 109.49277 * 67.29759 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6274 0.0056 5 8 4.1315 0.7056 0.0111 6 6 3.8458 3.0483 0.0050 7 7 5.3148 3.0482 0.0124 8 6 5.8349 2.4866 1.2662 9 6 7.3564 2.3365 1.1624 10 7 7.9288 3.6357 0.7782 11 6 8.9442 4.1786 1.4788 12 8 9.3251 3.6504 2.5052 13 6 9.5952 5.4165 0.9986 14 6 9.6839 5.6740 -0.3738 15 6 10.2860 6.8326 -0.8304 16 6 10.8154 7.7408 0.0599 17 6 10.7408 7.4962 1.4440 18 6 11.2830 8.4268 2.3607 19 1 10.8417 8.5400 3.3398 20 6 12.3911 9.2011 1.9988 21 7 12.7126 10.2537 2.7060 22 14 13.4112 8.7316 0.5060 23 1 12.9135 9.4665 -0.6846 24 1 14.8332 9.0851 0.7472 25 1 13.2977 7.2701 0.2687 26 6 10.1244 6.3226 1.9102 27 6 7.3642 4.3267 -0.3910 28 6 5.8423 4.3984 -0.2260 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.3881 2.1185 0.0004 35 1 3.4865 3.5603 -0.8875 36 1 3.4784 3.5639 0.8924 37 1 5.5908 3.1540 2.0926 38 1 5.3842 1.5097 1.4418 39 1 7.6000 1.5909 0.4054 40 1 7.7607 2.0290 2.1267 41 1 9.2762 4.9661 -1.0805 42 1 10.3458 7.0241 -1.8916 43 1 11.2884 8.6407 -0.3044 44 1 13.4809 10.7902 2.4555 45 1 10.0625 6.1257 2.9702 46 1 7.6086 3.7723 -1.2971 47 1 7.7732 5.3348 -0.4570 48 1 5.3972 4.8080 -1.1326 49 1 5.5982 5.0391 0.6213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049651283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:05 Heat of formation + Delta-G solvation = -49.741463 kcal Electronic energy + Delta-G solvation = -29881.487480 eV Core-core repulsion = 25807.795226 eV Total energy + Delta-G solvation = -4073.692253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.61803 -40.78321 -39.32221 -38.62021 -36.31464 -35.80103 -35.36498 -33.04107 -31.97221 -31.86744 -31.55927 -29.69641 -27.24966 -26.61758 -24.98767 -24.27801 -23.48774 -22.50369 -22.17344 -21.49661 -20.50304 -19.29082 -18.12136 -17.94718 -17.65734 -17.04671 -17.04193 -16.78690 -16.47917 -16.39440 -15.94142 -15.79147 -15.53222 -15.34277 -15.13462 -14.95121 -14.56342 -14.43576 -14.35574 -13.98917 -13.86705 -13.69511 -13.29004 -12.97427 -12.89291 -12.82859 -12.70702 -12.67321 -12.44180 -12.40657 -12.23669 -12.19095 -12.12164 -11.71336 -11.52773 -11.22818 -10.89035 -10.66362 -10.06980 -9.88007 -9.61071 -9.50714 -9.30285 -8.90064 -6.55749 0.23018 0.72710 1.25535 1.42038 1.48971 1.67209 1.80603 1.92552 2.11609 2.14077 2.60443 2.93426 3.39454 3.57111 3.78892 3.90130 4.00034 4.10230 4.18695 4.22519 4.25712 4.26361 4.30698 4.41857 4.44870 4.49747 4.53576 4.54607 4.61595 4.76366 4.81288 4.81871 4.89001 4.90538 4.97218 5.03655 5.07267 5.14732 5.27564 5.41732 5.47017 5.52735 5.62925 5.71472 5.82262 5.84019 5.94474 6.10106 6.28817 6.37795 6.62234 6.64886 6.74120 7.09847 7.32645 8.18939 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.029823 B = 0.002016 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.636958 B =13887.044038 C =14051.549640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.112 3.888 3 N -0.721 5.721 4 C 0.508 3.492 5 O -0.567 6.567 6 C 0.037 3.963 7 N -0.530 5.530 8 C 0.052 3.948 9 C 0.120 3.880 10 N -0.604 5.604 11 C 0.560 3.440 12 O -0.590 6.590 13 C -0.107 4.107 14 C -0.188 4.188 15 C -0.078 4.078 16 C -0.224 4.224 17 C 0.069 3.931 18 C -0.487 4.487 19 H 0.049 0.951 20 C 0.044 3.956 21 N -0.852 5.852 22 Si 0.968 3.032 23 H -0.242 1.242 24 H -0.280 1.280 25 H -0.254 1.254 26 C -0.168 4.168 27 C 0.089 3.911 28 C 0.045 3.955 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.416 0.584 35 H 0.139 0.861 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.109 0.891 44 H 0.295 0.705 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.574 -13.309 -13.374 30.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.012 4.012 3 N -0.376 5.376 4 C 0.294 3.706 5 O -0.446 6.446 6 C -0.093 4.093 7 N -0.255 5.255 8 C -0.077 4.077 9 C -0.002 4.002 10 N -0.336 5.336 11 C 0.351 3.649 12 O -0.472 6.472 13 C -0.110 4.110 14 C -0.207 4.207 15 C -0.095 4.095 16 C -0.244 4.244 17 C 0.066 3.934 18 C -0.517 4.517 19 H 0.067 0.933 20 C -0.170 4.170 21 N -0.478 5.478 22 Si 0.791 3.209 23 H -0.167 1.167 24 H -0.207 1.207 25 H -0.178 1.178 26 C -0.189 4.189 27 C -0.032 4.032 28 C -0.083 4.083 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.253 0.747 35 H 0.157 0.843 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.169 0.831 43 H 0.126 0.874 44 H 0.105 0.895 45 H 0.102 0.898 46 H 0.112 0.888 47 H 0.134 0.866 48 H 0.143 0.857 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -23.560 -14.327 -13.110 30.533 hybrid contribution 0.242 0.883 1.344 1.626 sum -23.318 -13.444 -11.767 29.376 Atomic orbital electron populations 1.21951 0.92001 1.04030 1.03333 1.21312 0.96069 0.82616 1.01159 1.45982 1.06616 1.09748 1.75246 1.20965 0.82525 0.91822 0.75240 1.90686 1.56269 1.47541 1.50085 1.22081 0.88257 0.93350 1.05626 1.61611 1.06785 1.22422 1.34689 1.22426 0.94271 1.01021 0.89948 1.21638 0.92803 0.84382 1.01398 1.48093 1.33586 1.21307 1.30621 1.18838 0.79563 0.84124 0.82359 1.90678 1.65846 1.64650 1.26019 1.19604 1.01850 0.94102 0.95469 1.21250 1.06888 0.99932 0.92655 1.21056 0.95607 0.93062 0.99806 1.21407 1.08246 1.01694 0.93033 1.17753 0.91640 0.90822 0.93178 1.19456 1.13617 1.17478 1.01107 0.93251 1.26878 0.97912 0.91946 1.00244 1.69699 1.25707 1.12576 1.39831 0.85473 0.76369 0.81016 0.78081 1.16681 1.20715 1.17827 1.21101 1.05470 0.94820 0.97495 1.22735 0.93080 0.99957 0.87438 1.22625 0.94627 0.88092 1.02943 0.90928 0.90155 0.91249 0.92705 0.93075 0.74681 0.84349 0.90207 0.95619 0.88600 0.90157 0.90832 0.82904 0.83120 0.87376 0.89487 0.89832 0.88754 0.86637 0.85654 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 10.03 71.98 0.72 0.10 16 2 C 0.11 1.18 6.39 86.38 0.55 1.73 16 3 N -0.72 -7.16 5.56 -463.05 -2.57 -9.74 16 4 C 0.51 8.48 7.49 87.66 0.66 9.14 16 5 O -0.57 -14.97 14.33 -3.03 -0.04 -15.01 16 6 C 0.04 0.46 5.45 85.56 0.47 0.93 16 7 N -0.53 -10.20 4.37 -899.83 -3.93 -14.13 16 8 C 0.05 1.26 5.25 86.39 0.45 1.72 16 9 C 0.12 3.47 6.61 86.35 0.57 4.04 16 10 N -0.60 -18.75 3.01 -821.28 -2.47 -21.22 16 11 C 0.56 22.88 7.43 86.80 0.65 23.53 16 12 O -0.59 -28.76 16.19 -3.88 -0.06 -28.82 16 13 C -0.11 -4.52 5.38 -20.13 -0.11 -4.63 16 14 C -0.19 -6.42 7.40 22.70 0.17 -6.26 16 15 C -0.08 -2.72 10.01 22.18 0.22 -2.49 16 16 C -0.22 -9.86 7.09 22.77 0.16 -9.70 16 17 C 0.07 3.53 5.11 -21.32 -0.11 3.42 16 18 C -0.49 -28.00 9.59 23.47 0.23 -27.77 16 19 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 20 C 0.04 2.38 5.44 85.26 0.46 2.85 16 21 N -0.85 -47.15 13.93 21.83 0.30 -46.84 16 22 Si 0.97 41.99 24.45 68.60 1.68 43.66 16 23 H -0.24 -9.38 6.66 99.48 0.66 -8.72 16 24 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 25 H -0.25 -11.37 6.80 99.48 0.68 -10.69 16 26 C -0.17 -8.45 9.34 23.01 0.21 -8.24 16 27 C 0.09 2.00 4.84 86.35 0.42 2.42 16 28 C 0.05 0.79 5.62 86.38 0.49 1.27 16 29 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.21 8.14 -2.38 -0.02 0.19 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.42 1.29 8.47 -92.71 -0.79 0.51 16 35 H 0.14 0.83 7.97 -2.39 -0.02 0.82 16 36 H 0.08 0.79 8.12 -2.38 -0.02 0.77 16 37 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.10 2.47 5.77 -2.38 -0.01 2.46 16 39 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.41 7.04 -2.39 -0.02 2.40 16 41 H 0.15 3.98 5.61 -2.91 -0.02 3.96 16 42 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 43 H 0.11 4.64 4.55 -2.91 -0.01 4.63 16 44 H 0.29 14.57 8.30 -92.71 -0.77 13.80 16 45 H 0.08 4.52 7.94 -2.91 -0.02 4.49 16 46 H 0.09 1.80 7.93 -2.39 -0.02 1.78 16 47 H 0.12 2.74 4.49 -2.39 -0.01 2.73 16 48 H 0.13 1.31 7.99 -2.39 -0.02 1.30 16 49 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -77.51 386.31 -0.78 -78.28 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.12 Total: 21.77 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 6.21 Total: -7.95 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -8.67 Total: -91.93 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.11 Total: -43.84 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.68 Total: 43.66 kcal Total: -77.51 -0.78 -78.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049651283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.542 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds