Wall clock time and date at job start Wed Apr 1 2020 04:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46937 * 2 1 4 4 C 1.46508 * 120.00171 * 270.00113 * 3 2 1 5 5 C 1.50693 * 109.47017 * 270.00318 * 4 3 2 6 6 H 1.08009 * 120.00439 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00169 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99725 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00265 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47375 * 119.99945 * 9 7 5 12 12 H 1.48505 * 109.47040 * 239.99807 * 9 7 5 13 13 C 1.34777 * 120.00035 * 89.99998 * 3 2 1 14 14 O 1.21282 * 119.99969 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99880 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.46936 * 174.51383 * 15 13 3 17 17 C 1.46422 * 111.00121 * 284.15752 * 16 15 13 18 18 C 1.53380 * 108.64585 * 287.84508 * 17 16 15 19 19 C 1.53042 * 107.90992 * 291.82378 * 18 17 16 20 20 C 1.50786 * 109.67489 * 47.22214 * 19 18 17 21 21 C 1.39955 * 118.14177 * 164.65138 * 20 19 18 22 22 C 1.47856 * 119.91694 * 359.68002 * 21 20 19 23 23 N 1.34775 * 120.00184 * 180.02562 * 22 21 20 24 24 O 1.21559 * 119.99897 * 0.02779 * 22 21 20 25 25 C 1.39376 * 120.17129 * 179.70891 * 21 20 19 26 26 C 1.38025 * 119.73264 * 359.87365 * 25 21 20 27 27 C 1.37914 * 120.11768 * 0.11552 * 26 25 21 28 28 C 1.38114 * 122.08381 * 344.41270 * 20 19 18 29 29 H 1.09007 * 109.47276 * 60.00097 * 1 2 3 30 30 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47227 * 299.99816 * 1 2 3 32 32 H 1.09006 * 109.47114 * 240.00213 * 2 1 3 33 33 H 1.08993 * 109.47114 * 120.00059 * 2 1 3 34 34 H 1.08997 * 109.47209 * 29.99935 * 4 3 2 35 35 H 1.08999 * 109.47078 * 149.99853 * 4 3 2 36 36 H 0.97000 * 119.99691 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.46957 * 54.50892 * 15 13 3 38 38 H 1.09002 * 109.47054 * 294.51112 * 15 13 3 39 39 H 1.08996 * 109.61148 * 168.09317 * 17 16 15 40 40 H 1.09006 * 109.74770 * 47.67270 * 17 16 15 41 41 H 1.09004 * 109.77836 * 172.21800 * 18 17 16 42 42 H 1.09001 * 109.82153 * 51.44730 * 18 17 16 43 43 H 1.08997 * 109.43604 * 287.15612 * 19 18 17 44 44 H 1.08998 * 109.43826 * 167.28404 * 19 18 17 45 45 H 0.96994 * 120.00617 * 0.02562 * 23 22 21 46 46 H 0.97001 * 119.99863 * 180.02562 * 23 22 21 47 47 H 1.08005 * 120.12949 * 179.90032 * 25 21 20 48 48 H 1.08000 * 119.93806 * 179.83831 * 26 25 21 49 49 H 1.08005 * 119.63378 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3429 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3493 3.1267 -3.6176 9 14 5.9137 2.0976 -3.4164 10 1 6.6014 1.2424 -2.4160 11 1 5.9217 1.4192 -4.7374 12 1 6.6210 3.3990 -3.5241 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1599 1.1672 15 6 1.9923 1.3059 2.4723 16 7 2.4334 2.1567 3.5856 17 6 3.8930 2.1536 3.7021 18 6 4.3383 0.7918 4.2497 19 6 3.8587 0.6878 5.6993 20 6 2.4133 1.1081 5.7872 21 6 1.6994 0.7789 6.9451 22 6 2.3647 0.0329 8.0346 23 7 1.6787 -0.2854 9.1502 24 8 3.5305 -0.2933 7.9241 25 6 0.3627 1.1520 7.0737 26 6 -0.2542 1.8500 6.0552 27 6 0.4489 2.1748 4.9141 28 6 1.7883 1.8034 4.7706 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.5817 1.6878 -2.0284 35 1 2.0954 3.1411 -1.1384 36 1 3.6753 3.5172 -4.4435 37 1 2.5488 0.3689 2.4884 38 1 0.9272 1.0978 2.5740 39 1 4.2072 2.9429 4.3850 40 1 4.3411 2.3180 2.7221 41 1 5.4253 0.7177 4.2147 42 1 3.8950 -0.0080 3.6564 43 1 4.4648 1.3386 6.3294 44 1 3.9583 -0.3424 6.0412 45 1 0.7484 -0.0255 9.2383 46 1 2.1154 -0.7745 9.8650 47 1 -0.1881 0.8962 7.9669 48 1 -1.2906 2.1385 6.1503 49 1 -0.0414 2.7216 4.1222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052688621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:31 Heat of formation + Delta-G solvation = -57.595079 kcal Electronic energy + Delta-G solvation = -31032.602077 eV Core-core repulsion = 26958.569266 eV Total energy + Delta-G solvation = -4074.032812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.10945 -40.79509 -39.82402 -37.79375 -36.85593 -35.05528 -34.81944 -34.55535 -31.69024 -31.39462 -31.15277 -29.77932 -28.10361 -25.79532 -25.05217 -24.47347 -24.07736 -23.86405 -21.56423 -20.72460 -19.63042 -18.88372 -18.61352 -18.11400 -17.85782 -17.32598 -17.02062 -16.84163 -16.54656 -16.17279 -16.01150 -15.93424 -15.33097 -15.14837 -14.95118 -14.66797 -14.56864 -14.35579 -14.26361 -13.88828 -13.62960 -13.59465 -13.28265 -13.26103 -13.12301 -12.89967 -12.74264 -12.69461 -12.55764 -12.47663 -12.16102 -12.00625 -11.86823 -11.69599 -11.66925 -10.98462 -10.68281 -10.64916 -10.63163 -10.14000 -9.72901 -9.41796 -8.91907 -8.22398 -6.36713 -0.14765 0.33594 1.34919 1.37550 1.49002 1.81926 1.87425 2.16994 2.38632 2.56663 2.77996 2.88518 3.07107 3.62620 3.69553 3.77169 3.82197 3.94851 3.99142 4.08790 4.11382 4.20797 4.25740 4.35067 4.44011 4.47915 4.52555 4.63347 4.75179 4.77073 4.79732 4.92863 4.96993 4.99233 5.06268 5.10031 5.16136 5.22902 5.27036 5.38769 5.41370 5.45334 5.58598 5.69272 5.86041 5.90524 5.93747 6.07490 6.35462 6.46582 6.71362 6.81904 7.29259 7.33587 7.52757 8.84750 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017305 B = 0.002773 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.623419 B =10093.481851 C =10880.157107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.264 3.736 5 C -0.538 4.538 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.499 3.501 14 O -0.576 6.576 15 C 0.058 3.942 16 N -0.494 5.494 17 C 0.061 3.939 18 C -0.155 4.155 19 C -0.068 4.068 20 C -0.074 4.074 21 C -0.142 4.142 22 C 0.559 3.441 23 N -0.829 5.829 24 O -0.576 6.576 25 C -0.083 4.083 26 C -0.108 4.108 27 C -0.101 4.101 28 C 0.088 3.912 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.023 0.977 35 H -0.004 1.004 36 H 0.267 0.733 37 H 0.086 0.914 38 H 0.125 0.875 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.417 0.583 46 H 0.413 0.587 47 H 0.168 0.832 48 H 0.165 0.835 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.021 -10.985 25.952 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.194 1.194 12 H -0.209 1.209 13 C 0.287 3.713 14 O -0.456 6.456 15 C -0.070 4.070 16 N -0.209 5.209 17 C -0.066 4.066 18 C -0.194 4.194 19 C -0.105 4.105 20 C -0.078 4.078 21 C -0.146 4.146 22 C 0.346 3.654 23 N -0.394 5.394 24 O -0.457 6.457 25 C -0.102 4.102 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.008 4.008 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.041 0.959 35 H 0.014 0.986 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.103 0.897 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.249 0.751 46 H 0.245 0.755 47 H 0.186 0.814 48 H 0.183 0.817 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.222 -9.949 25.395 29.127 hybrid contribution 1.155 -0.209 -0.601 1.319 sum -9.066 -10.158 24.794 28.286 Atomic orbital electron populations 1.22151 0.94326 1.03554 1.01811 1.21750 0.95547 0.81440 1.03677 1.48279 1.64242 1.14999 1.06126 1.18678 0.95213 0.91488 0.80318 1.21717 0.97870 1.31741 1.06383 0.93046 1.25839 1.02255 0.94544 0.96505 1.70059 1.37627 1.34297 1.14830 0.85398 0.79202 0.77964 0.78425 1.19182 1.19359 1.20869 1.21006 0.77662 0.86678 0.85999 1.90646 1.46977 1.20225 1.87711 1.22115 1.03735 0.94074 0.87070 1.58082 1.08093 1.51904 1.02821 1.22117 0.85502 0.97611 1.01371 1.22273 1.02661 0.97481 0.97010 1.20666 0.91237 1.03447 0.95159 1.20138 0.97207 0.95935 0.94541 1.19763 0.95806 1.04199 0.94792 1.18417 0.85573 0.78343 0.83105 1.43568 1.17032 1.59895 1.18897 1.90778 1.18212 1.56273 1.80425 1.21577 0.92137 0.96394 1.00132 1.21270 1.01432 0.97836 0.92029 1.21507 0.92628 0.98474 0.99508 1.18587 0.94207 0.97174 0.90865 0.94068 0.88594 0.92083 0.90869 0.88829 0.95947 0.98594 0.92449 0.89649 0.85757 0.90393 0.92123 0.89680 0.91424 0.91154 0.88553 0.75075 0.75520 0.81429 0.81722 0.85384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.24 71.98 0.74 -3.15 16 2 C 0.10 3.00 5.96 86.38 0.51 3.52 16 3 N -0.60 -25.84 2.46 -826.14 -2.03 -27.87 16 4 C 0.26 14.46 5.16 85.63 0.44 14.90 16 5 C -0.54 -31.47 9.39 25.60 0.24 -31.23 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 9 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 12 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 13 C 0.50 21.20 7.20 87.66 0.63 21.83 16 14 O -0.58 -30.69 15.12 -3.04 -0.05 -30.74 16 15 C 0.06 1.77 3.99 85.56 0.34 2.11 16 16 N -0.49 -15.47 4.02 -700.23 -2.81 -18.28 16 17 C 0.06 1.97 5.52 86.52 0.48 2.44 16 18 C -0.16 -4.11 6.02 30.74 0.19 -3.93 16 19 C -0.07 -1.76 4.31 29.89 0.13 -1.63 16 20 C -0.07 -1.79 5.78 -19.45 -0.11 -1.91 16 21 C -0.14 -2.62 5.88 -20.04 -0.12 -2.74 16 22 C 0.56 10.22 8.00 86.79 0.69 10.91 16 23 N -0.83 -6.57 8.82 -175.59 -1.55 -8.12 16 24 O -0.58 -15.20 13.92 -3.90 -0.05 -15.25 16 25 C -0.08 -0.94 9.53 22.49 0.21 -0.73 16 26 C -0.11 -1.37 10.02 22.14 0.22 -1.15 16 27 C -0.10 -2.06 9.13 22.56 0.21 -1.85 16 28 C 0.09 2.24 5.09 38.26 0.19 2.44 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.35 7.39 -2.39 -0.02 1.33 16 32 H 0.07 2.38 8.07 -2.38 -0.02 2.36 16 33 H 0.09 2.27 6.29 -2.39 -0.02 2.25 16 34 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 35 H 0.00 -0.26 7.42 -2.39 -0.02 -0.28 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.09 2.32 5.13 -2.39 -0.01 2.31 16 38 H 0.12 3.08 6.61 -2.39 -0.02 3.06 16 39 H 0.08 2.47 8.11 -2.39 -0.02 2.45 16 40 H 0.06 2.33 6.91 -2.38 -0.02 2.32 16 41 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.07 1.74 6.31 -2.39 -0.02 1.73 16 43 H 0.07 1.92 8.03 -2.39 -0.02 1.90 16 44 H 0.10 2.61 6.06 -2.39 -0.01 2.60 16 45 H 0.42 0.42 6.84 -92.71 -0.63 -0.22 16 46 H 0.41 2.37 8.93 -92.71 -0.83 1.54 16 47 H 0.17 0.33 6.38 -2.91 -0.02 0.31 16 48 H 0.17 1.00 8.06 -2.91 -0.02 0.98 16 49 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -83.81 388.35 0.82 -82.99 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -0.46 Total: 15.40 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.46 Total: 10.74 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -6.11 Total: -110.89 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.10 Total: -45.99 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -83.81 0.82 -82.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052688621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.398 kcal (2) G-P(sol) polarization free energy of solvation -83.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds