Wall clock time and date at job start Wed Apr 1 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47031 * 2 1 4 4 C 1.37100 * 119.99787 * 263.53644 * 3 2 1 5 5 H 1.08004 * 119.99944 * 194.46473 * 4 3 2 6 6 C 1.38949 * 120.00236 * 14.47104 * 4 3 2 7 7 N 1.31415 * 119.99650 * 17.23114 * 6 4 3 8 8 Si 1.86794 * 120.00284 * 197.22761 * 6 4 3 9 9 H 1.48502 * 109.47284 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47277 * 119.99812 * 8 6 4 11 11 H 1.48501 * 109.47724 * 239.99955 * 8 6 4 12 12 C 1.34776 * 120.00188 * 83.54309 * 3 2 1 13 13 O 1.21291 * 119.99912 * 5.95389 * 12 3 2 14 14 C 1.50705 * 119.99803 * 185.95623 * 12 3 2 15 15 H 1.08999 * 109.52570 * 42.39130 * 14 12 3 16 16 C 1.53039 * 109.49381 * 162.47169 * 14 12 3 17 17 C 1.53043 * 109.53566 * 181.31371 * 16 14 12 18 18 C 1.53620 * 109.24180 * 298.50959 * 17 16 14 19 19 N 1.46927 * 108.54367 * 54.85981 * 18 17 16 20 20 C 1.34769 * 120.63222 * 126.36533 * 19 18 17 21 21 O 1.21596 * 120.00209 * 183.35190 * 20 19 18 22 22 N 1.34780 * 120.00271 * 3.35252 * 20 19 18 23 23 C 1.39945 * 120.00116 * 185.62348 * 22 20 19 24 24 C 1.38872 * 120.06443 * 143.93081 * 23 22 20 25 25 C 1.38118 * 119.92466 * 180.25895 * 24 23 22 26 26 C 1.38278 * 120.07189 * 359.42261 * 25 24 23 27 27 C 1.38282 * 120.13908 * 0.60012 * 26 25 24 28 28 C 1.38121 * 120.07059 * 359.68029 * 27 26 25 29 29 C 1.46924 * 118.73583 * 306.09272 * 19 18 17 30 30 H 1.09002 * 109.47137 * 300.02979 * 1 2 3 31 31 H 1.09006 * 109.47216 * 60.02922 * 1 2 3 32 32 H 1.09000 * 109.47716 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46711 * 239.99711 * 2 1 3 34 34 H 1.08996 * 109.47083 * 120.00019 * 2 1 3 35 35 H 0.97008 * 119.99882 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46275 * 301.33524 * 16 14 12 37 37 H 1.09002 * 109.46165 * 61.29713 * 16 14 12 38 38 H 1.09004 * 109.49776 * 58.58900 * 17 16 14 39 39 H 1.09003 * 109.49752 * 178.68297 * 17 16 14 40 40 H 1.09003 * 109.74418 * 295.11850 * 18 17 16 41 41 H 1.09000 * 109.66497 * 174.54709 * 18 17 16 42 42 H 0.97002 * 119.99400 * 5.63265 * 22 20 19 43 43 H 1.07998 * 120.03549 * 359.97438 * 24 23 22 44 44 H 1.08004 * 119.96063 * 179.69964 * 25 24 23 45 45 H 1.07994 * 119.93141 * 180.30092 * 26 25 24 46 46 H 1.08004 * 119.96623 * 179.69667 * 27 26 25 47 47 H 1.08000 * 120.03569 * 179.97438 * 28 27 26 48 48 H 1.08998 * 109.58983 * 173.65244 * 29 19 18 49 49 H 1.09005 * 109.58452 * 294.07275 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3728 1.9829 -1.1798 5 1 2.9446 2.8990 -1.1683 6 6 1.9962 1.4142 -2.3904 7 7 1.0375 0.5160 -2.4243 8 14 2.8525 1.9264 -3.9695 9 1 3.8878 2.9460 -3.6629 10 1 3.4941 0.7405 -4.5918 11 1 1.8563 2.5005 -4.9092 12 6 2.1191 2.0603 1.1598 13 8 1.9097 1.4964 2.2130 14 6 2.4922 3.5204 1.1479 15 1 1.9553 4.0271 0.3460 16 6 2.1207 4.1533 2.4909 17 6 2.4690 5.6434 2.4682 18 6 3.9822 5.8064 2.2594 19 7 4.3671 5.0786 1.0425 20 6 5.0481 5.6981 0.0583 21 8 5.3077 5.1025 -0.9696 22 7 5.4415 6.9779 0.2131 23 6 6.0438 7.6585 -0.8510 24 6 5.7936 9.0109 -1.0426 25 6 6.3854 9.6786 -2.0970 26 6 7.2356 9.0045 -2.9542 27 6 7.4865 7.6577 -2.7664 28 6 6.8932 6.9829 -1.7173 29 6 4.0008 3.6609 0.9217 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.7743 0.1192 -3.2695 36 1 1.0516 4.0330 2.6657 37 1 2.6766 3.6626 3.2898 38 1 1.9324 6.1302 1.6538 39 1 2.1827 6.0985 3.4164 40 1 4.5183 5.3964 3.1154 41 1 4.2251 6.8629 2.1454 42 1 5.3071 7.4271 1.0623 43 1 5.1333 9.5390 -0.3706 44 1 6.1874 10.7293 -2.2494 45 1 7.7010 9.5299 -3.7750 46 1 8.1472 7.1328 -3.4405 47 1 7.0892 5.9309 -1.5714 48 1 4.2559 3.3011 -0.0751 49 1 4.5383 3.0795 1.6709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067687773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:40 Heat of formation + Delta-G solvation = -12.912826 kcal Electronic energy + Delta-G solvation = -31367.120220 eV Core-core repulsion = 27295.024977 eV Total energy + Delta-G solvation = -4072.095244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.84006 -39.33745 -38.45368 -36.85741 -35.00600 -34.80249 -32.60235 -31.55257 -31.26227 -30.91757 -29.53114 -29.06057 -25.27445 -24.90460 -23.91661 -22.87234 -22.31087 -22.05760 -20.64289 -19.48700 -18.92942 -18.47956 -17.44505 -16.70611 -16.30258 -16.06738 -15.56553 -15.17004 -14.65361 -14.57127 -14.42367 -14.26124 -14.12381 -13.93335 -13.49115 -13.23647 -13.10936 -13.06806 -12.92311 -12.63554 -12.39609 -12.12393 -11.72821 -11.62410 -11.40958 -11.30727 -11.09515 -10.97357 -10.80436 -10.78697 -10.53468 -10.37207 -10.32301 -10.19670 -10.00204 -9.82827 -9.65715 -8.95063 -8.90094 -8.63984 -8.30021 -8.07348 -7.71039 -6.31687 -3.88217 1.27252 1.38785 2.55973 3.14871 3.19568 3.28325 3.40569 3.72439 3.83870 3.88741 4.15253 4.65150 4.82626 4.89117 4.91139 4.99091 5.05718 5.11432 5.12594 5.35305 5.40273 5.48727 5.55905 5.59442 5.65027 5.73488 5.94521 5.96577 6.00318 6.12406 6.24321 6.28543 6.31590 6.35536 6.48306 6.52382 6.58102 6.60444 6.66869 6.78726 6.80906 6.90186 6.97036 7.05134 7.06593 7.39609 7.46759 7.79031 7.86156 7.87783 8.47610 8.58379 9.10662 9.54888 9.94453 10.63851 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003785 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.449227 B = 7395.655090 C = 9441.738346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 N -0.434 5.434 4 C -0.333 4.333 5 H 0.106 0.894 6 C 0.038 3.962 7 N -0.861 5.861 8 Si 0.911 3.089 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.283 1.283 12 C 0.456 3.544 13 O -0.611 6.611 14 C -0.101 4.101 15 H 0.091 0.909 16 C -0.096 4.096 17 C -0.133 4.133 18 C 0.110 3.890 19 N -0.619 5.619 20 C 0.704 3.296 21 O -0.563 6.563 22 N -0.691 5.691 23 C 0.169 3.831 24 C -0.151 4.151 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.102 4.102 28 C -0.119 4.119 29 C 0.137 3.863 30 H 0.022 0.978 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.093 0.907 34 H 0.035 0.965 35 H 0.267 0.733 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.404 0.596 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.119 0.881 46 H 0.123 0.877 47 H 0.142 0.858 48 H 0.113 0.887 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 16.078 4.212 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 N -0.151 5.151 4 C -0.461 4.461 5 H 0.123 0.877 6 C -0.166 4.166 7 N -0.499 5.499 8 Si 0.737 3.263 9 H -0.183 1.183 10 H -0.206 1.206 11 H -0.209 1.209 12 C 0.244 3.756 13 O -0.498 6.498 14 C -0.124 4.124 15 H 0.109 0.891 16 C -0.134 4.134 17 C -0.172 4.172 18 C -0.014 4.014 19 N -0.355 5.355 20 C 0.406 3.594 21 O -0.438 6.438 22 N -0.341 5.341 23 C 0.074 3.926 24 C -0.172 4.172 25 C -0.123 4.123 26 C -0.161 4.161 27 C -0.121 4.121 28 C -0.139 4.139 29 C 0.014 3.986 30 H 0.042 0.958 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.241 0.759 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.141 0.859 47 H 0.160 0.840 48 H 0.131 0.869 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.366 15.131 3.832 17.710 hybrid contribution 0.032 0.496 -0.508 0.711 sum 8.398 15.627 3.324 18.049 Atomic orbital electron populations 1.22058 0.96828 0.99438 1.01743 1.21140 0.94394 0.83136 1.00008 1.43865 1.54465 1.11248 1.05493 1.19913 1.33137 1.10309 0.82692 0.87693 1.25226 0.95231 0.96757 0.99431 1.70114 1.24904 1.28242 1.26655 0.86076 0.79867 0.79003 0.81368 1.18309 1.20569 1.20902 1.19778 0.84066 0.87717 0.84061 1.90511 1.58064 1.70105 1.31153 1.21364 0.96307 0.95867 0.98815 0.89109 1.21287 1.02073 0.93001 0.97088 1.22021 0.94795 0.98239 1.02119 1.21778 0.96494 0.95543 0.87567 1.47388 1.57733 1.12465 1.17963 1.15835 0.79016 0.80867 0.83698 1.90977 1.60786 1.64650 1.27393 1.42824 1.63592 1.12858 1.14871 1.17554 0.93783 0.91210 0.90077 1.20867 1.02606 0.93523 1.00207 1.20877 0.97149 0.99640 0.94597 1.21101 1.00091 0.94810 1.00107 1.21093 0.99347 0.94306 0.97351 1.21420 0.95383 1.01514 0.95596 1.21648 0.93959 0.78073 1.04892 0.95845 0.88993 0.94950 0.88912 0.94658 0.92275 0.91505 0.91158 0.91476 0.90772 0.90970 0.91141 0.75863 0.85995 0.85951 0.86252 0.85868 0.84041 0.86933 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 9.65 37.16 0.36 -3.01 16 2 C 0.14 3.38 5.28 -4.05 -0.02 3.36 16 3 N -0.43 -10.96 2.64 -114.81 -0.30 -11.26 16 4 C -0.33 -8.48 8.65 -14.93 -0.13 -8.61 16 5 H 0.11 2.65 4.81 -52.48 -0.25 2.39 16 6 C 0.04 0.96 5.02 -17.47 -0.09 0.87 16 7 N -0.86 -22.00 8.22 55.50 0.46 -21.54 16 8 Si 0.91 20.47 29.59 -169.99 -5.03 15.45 16 9 H -0.26 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 C 0.46 10.88 6.79 -10.98 -0.07 10.80 16 13 O -0.61 -15.84 15.70 5.55 0.09 -15.75 16 14 C -0.10 -1.96 1.83 -91.65 -0.17 -2.13 16 15 H 0.09 1.89 7.42 -51.93 -0.39 1.50 16 16 C -0.10 -1.54 4.58 -26.69 -0.12 -1.66 16 17 C -0.13 -1.55 6.10 -26.39 -0.16 -1.71 16 18 C 0.11 1.18 6.39 -3.49 -0.02 1.15 16 19 N -0.62 -9.26 2.97 -178.23 -0.53 -9.79 16 20 C 0.70 11.41 8.15 -86.92 -0.71 10.71 16 21 O -0.56 -11.50 13.22 5.28 0.07 -11.43 16 22 N -0.69 -8.58 5.21 -14.22 -0.07 -8.65 16 23 C 0.17 2.20 6.29 -83.69 -0.53 1.67 16 24 C -0.15 -1.61 9.97 -39.39 -0.39 -2.00 16 25 C -0.10 -1.02 10.04 -39.61 -0.40 -1.41 16 26 C -0.14 -1.46 10.04 -39.55 -0.40 -1.85 16 27 C -0.10 -1.22 10.04 -39.61 -0.40 -1.61 16 28 C -0.12 -1.68 8.70 -39.39 -0.34 -2.02 16 29 C 0.14 2.49 5.42 -3.71 -0.02 2.47 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 2.33 6.08 -51.93 -0.32 2.02 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 2.39 6.02 -51.93 -0.31 2.07 16 34 H 0.04 0.87 7.54 -51.93 -0.39 0.48 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.54 5.70 -51.93 -0.30 0.25 16 42 H 0.40 3.60 6.38 -40.82 -0.26 3.34 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 44 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 45 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 47 H 0.14 2.28 6.27 -52.49 -0.33 1.95 16 48 H 0.11 2.39 4.89 -51.93 -0.25 2.14 16 49 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -31.34 382.40 -10.16 -41.51 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -7.00 Total: 10.71 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -3.61 Total: 5.01 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: -0.45 Total: -51.25 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: 0.16 Total: -27.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.34 -10.16 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.596 kcal (2) G-P(sol) polarization free energy of solvation -31.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds