Wall clock time and date at job start Wed Apr 1 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46496 * 109.47031 * 2 1 4 4 C 1.37100 * 119.99787 * 263.53644 * 3 2 1 5 5 H 1.08004 * 119.99944 * 194.46473 * 4 3 2 6 6 C 1.38949 * 120.00236 * 14.47104 * 4 3 2 7 7 N 1.31415 * 119.99650 * 17.23114 * 6 4 3 8 8 Si 1.86794 * 120.00284 * 197.22761 * 6 4 3 9 9 H 1.48502 * 109.47284 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47277 * 119.99812 * 8 6 4 11 11 H 1.48501 * 109.47724 * 239.99955 * 8 6 4 12 12 C 1.34776 * 120.00188 * 83.54309 * 3 2 1 13 13 O 1.21291 * 119.99912 * 5.95389 * 12 3 2 14 14 C 1.50705 * 119.99803 * 185.95623 * 12 3 2 15 15 H 1.08999 * 109.52570 * 42.39130 * 14 12 3 16 16 C 1.53039 * 109.49381 * 162.47169 * 14 12 3 17 17 C 1.53043 * 109.53566 * 181.31371 * 16 14 12 18 18 C 1.53620 * 109.24180 * 298.50959 * 17 16 14 19 19 N 1.46927 * 108.54367 * 54.85981 * 18 17 16 20 20 C 1.34769 * 120.63222 * 126.36533 * 19 18 17 21 21 O 1.21596 * 120.00209 * 183.35190 * 20 19 18 22 22 N 1.34780 * 120.00271 * 3.35252 * 20 19 18 23 23 C 1.39945 * 120.00116 * 185.62348 * 22 20 19 24 24 C 1.38872 * 120.06443 * 143.93081 * 23 22 20 25 25 C 1.38118 * 119.92466 * 180.25895 * 24 23 22 26 26 C 1.38278 * 120.07189 * 359.42261 * 25 24 23 27 27 C 1.38282 * 120.13908 * 0.60012 * 26 25 24 28 28 C 1.38121 * 120.07059 * 359.68029 * 27 26 25 29 29 C 1.46924 * 118.73583 * 306.09272 * 19 18 17 30 30 H 1.09002 * 109.47137 * 300.02979 * 1 2 3 31 31 H 1.09006 * 109.47216 * 60.02922 * 1 2 3 32 32 H 1.09000 * 109.47716 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46711 * 239.99711 * 2 1 3 34 34 H 1.08996 * 109.47083 * 120.00019 * 2 1 3 35 35 H 0.97008 * 119.99882 * 179.97438 * 7 6 4 36 36 H 1.08996 * 109.46275 * 301.33524 * 16 14 12 37 37 H 1.09002 * 109.46165 * 61.29713 * 16 14 12 38 38 H 1.09004 * 109.49776 * 58.58900 * 17 16 14 39 39 H 1.09003 * 109.49752 * 178.68297 * 17 16 14 40 40 H 1.09003 * 109.74418 * 295.11850 * 18 17 16 41 41 H 1.09000 * 109.66497 * 174.54709 * 18 17 16 42 42 H 0.97002 * 119.99400 * 5.63265 * 22 20 19 43 43 H 1.07998 * 120.03549 * 359.97438 * 24 23 22 44 44 H 1.08004 * 119.96063 * 179.69964 * 25 24 23 45 45 H 1.07994 * 119.93141 * 180.30092 * 26 25 24 46 46 H 1.08004 * 119.96623 * 179.69667 * 27 26 25 47 47 H 1.08000 * 120.03569 * 179.97438 * 28 27 26 48 48 H 1.08998 * 109.58983 * 173.65244 * 29 19 18 49 49 H 1.09005 * 109.58452 * 294.07275 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3728 1.9829 -1.1798 5 1 2.9446 2.8990 -1.1683 6 6 1.9962 1.4142 -2.3904 7 7 1.0375 0.5160 -2.4243 8 14 2.8525 1.9264 -3.9695 9 1 3.8878 2.9460 -3.6629 10 1 3.4941 0.7405 -4.5918 11 1 1.8563 2.5005 -4.9092 12 6 2.1191 2.0603 1.1598 13 8 1.9097 1.4964 2.2130 14 6 2.4922 3.5204 1.1479 15 1 1.9553 4.0271 0.3460 16 6 2.1207 4.1533 2.4909 17 6 2.4690 5.6434 2.4682 18 6 3.9822 5.8064 2.2594 19 7 4.3671 5.0786 1.0425 20 6 5.0481 5.6981 0.0583 21 8 5.3077 5.1025 -0.9696 22 7 5.4415 6.9779 0.2131 23 6 6.0438 7.6585 -0.8510 24 6 5.7936 9.0109 -1.0426 25 6 6.3854 9.6786 -2.0970 26 6 7.2356 9.0045 -2.9542 27 6 7.4865 7.6577 -2.7664 28 6 6.8932 6.9829 -1.7173 29 6 4.0008 3.6609 0.9217 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5134 -0.8903 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.7743 0.1192 -3.2695 36 1 1.0516 4.0330 2.6657 37 1 2.6766 3.6626 3.2898 38 1 1.9324 6.1302 1.6538 39 1 2.1827 6.0985 3.4164 40 1 4.5183 5.3964 3.1154 41 1 4.2251 6.8629 2.1454 42 1 5.3071 7.4271 1.0623 43 1 5.1333 9.5390 -0.3706 44 1 6.1874 10.7293 -2.2494 45 1 7.7010 9.5299 -3.7750 46 1 8.1472 7.1328 -3.4405 47 1 7.0892 5.9309 -1.5714 48 1 4.2559 3.3011 -0.0751 49 1 4.5383 3.0795 1.6709 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067687773.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:38 Heat of formation + Delta-G solvation = -30.459348 kcal Electronic energy + Delta-G solvation = -31367.881095 eV Core-core repulsion = 27295.024977 eV Total energy + Delta-G solvation = -4072.856118 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.02714 -40.85513 -39.70062 -38.20236 -36.94940 -35.93035 -33.91382 -33.49260 -32.71238 -31.77570 -31.13486 -30.19158 -26.85029 -26.47214 -25.44482 -23.80092 -23.65738 -23.26280 -22.02439 -20.97373 -20.51933 -19.62945 -18.73153 -18.22683 -17.93365 -17.24647 -16.79538 -16.43517 -16.23682 -16.22174 -15.89639 -15.55936 -15.34905 -14.96609 -14.88462 -14.68577 -14.45718 -14.35750 -14.21201 -14.00932 -13.72881 -13.63214 -13.42001 -13.18154 -12.91414 -12.64761 -12.57670 -12.38278 -12.35304 -12.15601 -12.13299 -11.92942 -11.77806 -11.63688 -11.54781 -11.43609 -11.03194 -10.88285 -10.31479 -9.81597 -9.78848 -9.69627 -9.03499 -8.28933 -5.89899 0.39012 0.51815 1.29585 1.40606 1.42113 1.56794 1.95729 2.03001 2.26730 2.73664 2.94374 2.99655 3.09277 3.81971 3.84303 3.95821 4.04623 4.08815 4.13374 4.20703 4.32646 4.35009 4.50319 4.53887 4.57912 4.62352 4.69865 4.75364 4.76094 4.79028 4.82688 4.91489 4.94333 5.05235 5.10334 5.15320 5.22067 5.31676 5.40582 5.43642 5.44379 5.45506 5.50345 5.61670 5.68292 5.82330 5.86212 5.88447 6.15895 6.48832 6.81272 7.11563 7.40280 7.58560 7.98337 8.67416 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011102 B = 0.003785 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.449227 B = 7395.655090 C = 9441.738346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.136 3.864 3 N -0.448 5.448 4 C -0.346 4.346 5 H 0.101 0.899 6 C 0.006 3.994 7 N -0.875 5.875 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.448 3.552 13 O -0.634 6.634 14 C -0.091 4.091 15 H 0.073 0.927 16 C -0.092 4.092 17 C -0.123 4.123 18 C 0.104 3.896 19 N -0.617 5.617 20 C 0.699 3.301 21 O -0.614 6.614 22 N -0.671 5.671 23 C 0.144 3.856 24 C -0.145 4.145 25 C -0.101 4.101 26 C -0.140 4.140 27 C -0.116 4.116 28 C -0.150 4.150 29 C 0.150 3.850 30 H 0.013 0.987 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.271 0.729 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.422 0.578 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.147 0.853 46 H 0.130 0.870 47 H 0.108 0.892 48 H 0.076 0.924 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.645 19.633 4.787 21.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.013 3.987 3 N -0.165 5.165 4 C -0.473 4.473 5 H 0.119 0.881 6 C -0.197 4.197 7 N -0.513 5.513 8 Si 0.795 3.205 9 H -0.203 1.203 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.237 3.763 13 O -0.523 6.523 14 C -0.113 4.113 15 H 0.092 0.908 16 C -0.130 4.130 17 C -0.161 4.161 18 C -0.017 4.017 19 N -0.352 5.352 20 C 0.401 3.599 21 O -0.493 6.493 22 N -0.322 5.322 23 C 0.050 3.950 24 C -0.165 4.165 25 C -0.120 4.120 26 C -0.159 4.159 27 C -0.135 4.135 28 C -0.170 4.170 29 C 0.026 3.974 30 H 0.033 0.967 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.263 0.737 43 H 0.170 0.830 44 H 0.175 0.825 45 H 0.165 0.835 46 H 0.148 0.852 47 H 0.126 0.874 48 H 0.095 0.905 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.570 18.733 4.444 21.074 hybrid contribution -0.009 -0.594 -0.682 0.904 sum 8.561 18.138 3.762 20.407 Atomic orbital electron populations 1.21884 0.95814 1.00522 1.00314 1.21103 0.95184 0.83325 0.99133 1.44061 1.54886 1.11511 1.06009 1.19996 1.33572 1.10585 0.83133 0.88118 1.25808 0.95593 0.96960 1.01345 1.70172 1.25160 1.28592 1.27399 0.85206 0.78425 0.78208 0.78640 1.20319 1.19816 1.20218 1.20560 0.83042 0.89450 0.83250 1.90475 1.58907 1.71185 1.31757 1.21283 0.96845 0.92675 1.00540 0.90834 1.21281 1.01253 0.96062 0.94418 1.21990 0.95302 0.94672 1.04125 1.22159 0.96032 0.97405 0.86137 1.47313 1.57438 1.11266 1.19227 1.16042 0.78955 0.81818 0.83108 1.90952 1.62608 1.66114 1.29630 1.42517 1.62654 1.11328 1.15745 1.17794 0.94399 0.92371 0.90456 1.21203 1.02389 0.92217 1.00722 1.21355 0.95838 1.01224 0.93536 1.21470 0.99689 0.93941 1.00750 1.21281 0.99650 0.95514 0.97030 1.21343 0.97595 1.00419 0.97681 1.21198 0.93005 0.80458 1.02781 0.96741 0.90612 0.92655 0.89961 0.95119 0.91863 0.92686 0.91451 0.91830 0.86843 0.89063 0.87199 0.73685 0.83017 0.82465 0.83516 0.85157 0.87406 0.90536 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.10 9.65 71.98 0.69 -5.41 16 2 C 0.14 6.94 5.28 86.38 0.46 7.40 16 3 N -0.45 -23.49 2.64 -635.55 -1.68 -25.16 16 4 C -0.35 -18.31 8.65 84.04 0.73 -17.58 16 5 H 0.10 5.37 4.81 -2.91 -0.01 5.36 16 6 C 0.01 0.31 5.02 84.93 0.43 0.73 16 7 N -0.87 -45.36 8.22 21.66 0.18 -45.18 16 8 Si 0.97 43.36 29.59 68.60 2.03 45.39 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 11 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 12 C 0.45 22.11 6.79 87.66 0.60 22.70 16 13 O -0.63 -33.71 15.70 -3.06 -0.05 -33.76 16 14 C -0.09 -3.63 1.83 -11.46 -0.02 -3.65 16 15 H 0.07 3.17 7.42 -2.39 -0.02 3.16 16 16 C -0.09 -2.86 4.58 30.62 0.14 -2.72 16 17 C -0.12 -2.49 6.10 30.82 0.19 -2.30 16 18 C 0.10 1.90 6.39 86.51 0.55 2.46 16 19 N -0.62 -18.16 2.97 -836.07 -2.48 -20.64 16 20 C 0.70 22.86 8.15 179.06 1.46 24.32 16 21 O -0.61 -26.58 13.22 -4.02 -0.05 -26.63 16 22 N -0.67 -15.74 5.21 -317.17 -1.65 -17.39 16 23 C 0.14 3.61 6.29 38.15 0.24 3.85 16 24 C -0.14 -2.61 9.97 22.39 0.22 -2.39 16 25 C -0.10 -1.60 10.04 22.25 0.22 -1.37 16 26 C -0.14 -2.51 10.04 22.29 0.22 -2.29 16 27 C -0.12 -2.74 10.04 22.25 0.22 -2.51 16 28 C -0.15 -4.39 8.70 22.39 0.19 -4.19 16 29 C 0.15 5.65 5.42 86.36 0.47 6.12 16 30 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 3.90 6.08 -2.38 -0.01 3.89 16 32 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 4.36 6.02 -2.38 -0.01 4.34 16 34 H 0.03 1.56 7.54 -2.39 -0.02 1.55 16 35 H 0.27 13.26 8.31 -92.70 -0.77 12.49 16 36 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.07 2.14 7.96 -2.39 -0.02 2.12 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 41 H 0.11 1.17 5.70 -2.39 -0.01 1.16 16 42 H 0.42 6.18 6.38 -92.71 -0.59 5.59 16 43 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 44 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.13 2.69 8.06 -2.91 -0.02 2.67 16 47 H 0.11 3.83 6.27 -2.91 -0.02 3.82 16 48 H 0.08 3.48 4.89 -2.39 -0.01 3.46 16 49 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 Total: -1.00 -72.92 382.40 3.70 -69.22 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.39 Total: 30.99 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 7.02 Total: 23.16 kcal Atomic # 7 Polarization: -102.74 SS G_CDS: -5.63 Total: -108.37 kcal Atomic # 8 Polarization: -60.29 SS G_CDS: -0.10 Total: -60.39 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.92 3.70 -69.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067687773.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.759 kcal (2) G-P(sol) polarization free energy of solvation -72.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds