Wall clock time and date at job start Wed Apr 1 2020 04:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47126 * 2 1 4 4 C 1.46505 * 119.99928 * 269.99452 * 3 2 1 5 5 C 1.50694 * 109.47635 * 270.00144 * 4 3 2 6 6 H 1.08002 * 119.99685 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00348 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47055 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47298 * 119.99825 * 9 7 5 12 12 H 1.48498 * 109.47159 * 239.99925 * 9 7 5 13 13 C 1.34774 * 120.00437 * 90.00057 * 3 2 1 14 14 O 1.21281 * 120.00469 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99593 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46901 * 185.46796 * 15 13 3 17 17 C 1.43555 * 111.00122 * 53.74766 * 16 15 13 18 18 C 1.51237 * 113.22929 * 50.72500 * 17 16 15 19 19 H 1.09000 * 108.96530 * 312.58256 * 18 17 16 20 20 C 1.52997 * 109.03020 * 193.69209 * 18 17 16 21 21 C 1.48685 * 111.72179 * 73.11297 * 18 17 16 22 22 O 1.21298 * 116.83511 * 145.11620 * 21 18 17 23 23 N 1.30803 * 126.32760 * 325.14632 * 21 18 17 24 24 C 1.38078 * 134.52725 * 8.86700 * 23 21 18 25 25 C 1.40297 * 115.03497 * 172.68863 * 24 23 21 26 26 C 1.37524 * 121.39690 * 178.35001 * 25 24 23 27 27 C 1.38300 * 119.70748 * 0.02562 * 26 25 24 28 28 C 1.37566 * 119.56155 * 0.37640 * 27 26 25 29 29 C 1.38296 * 126.14527 * 351.68342 * 24 23 21 30 30 H 1.09000 * 109.47287 * 60.00605 * 1 2 3 31 31 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47646 * 300.00270 * 1 2 3 33 33 H 1.09002 * 109.47646 * 239.99730 * 2 1 3 34 34 H 1.09000 * 109.47287 * 119.99395 * 2 1 3 35 35 H 1.09000 * 109.46745 * 30.00408 * 4 3 2 36 36 H 1.09000 * 109.46944 * 149.99902 * 4 3 2 37 37 H 0.96995 * 119.99954 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.46513 * 65.47324 * 15 13 3 39 39 H 1.09001 * 109.47346 * 305.46644 * 15 13 3 40 40 H 1.09002 * 108.73418 * 171.69835 * 17 16 15 41 41 H 1.09001 * 108.73473 * 289.75755 * 17 16 15 42 42 H 1.08995 * 109.47351 * 297.77890 * 20 18 17 43 43 H 1.09002 * 109.47312 * 57.78479 * 20 18 17 44 44 H 1.09006 * 109.46643 * 177.77873 * 20 18 17 45 45 H 0.97002 * 112.73852 * 188.84294 * 23 21 18 46 46 H 1.07999 * 119.30227 * 358.32396 * 25 24 23 47 47 H 1.08001 * 120.14025 * 180.02562 * 26 25 24 48 48 H 1.07996 * 120.22137 * 180.35231 * 27 26 25 49 49 H 1.08006 * 119.34772 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9131 2.0955 -3.4175 10 1 6.6005 1.2395 -2.4175 11 1 5.9202 1.4161 -4.7381 12 1 6.6209 3.3964 -3.5263 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.1833 2.2453 3.5856 17 6 1.3837 3.4242 3.4082 18 6 -0.0682 3.1213 3.1125 19 1 -0.1199 2.3590 2.3352 20 6 -0.7509 4.3944 2.6086 21 6 -0.7852 2.6321 4.3197 22 8 -1.9474 2.9590 4.4364 23 7 -0.2841 1.8838 5.2684 24 6 0.9853 1.4424 5.5848 25 6 1.0912 0.7687 6.8109 26 6 2.2883 0.2445 7.2393 27 6 3.4170 0.3800 6.4516 28 6 3.3305 1.0454 5.2506 29 6 2.1181 1.5897 4.8052 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1385 37 1 3.6749 3.5152 -4.4445 38 1 2.6886 0.4749 2.5737 39 1 0.9693 0.9276 2.4887 40 1 1.4382 4.0242 4.3166 41 1 1.7951 4.0053 2.5828 42 1 -0.7202 5.1560 3.3878 43 1 -0.2306 4.7595 1.7230 44 1 -1.7882 4.1747 2.3558 45 1 -0.9571 1.5673 5.8912 46 1 0.2142 0.6597 7.4316 47 1 2.3467 -0.2708 8.1867 48 1 4.3600 -0.0333 6.7773 49 1 4.2142 1.1496 4.6384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072488203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:49 Heat of formation + Delta-G solvation = -11.697918 kcal Electronic energy + Delta-G solvation = -31979.363829 eV Core-core repulsion = 27907.321268 eV Total energy + Delta-G solvation = -4072.042561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.78475 -39.59689 -39.11181 -37.08290 -35.41110 -35.29202 -33.42055 -32.83896 -30.46807 -30.17664 -29.74856 -28.44352 -26.59354 -25.03449 -24.82459 -23.12746 -23.00308 -22.62638 -21.10518 -19.77166 -18.53445 -18.06040 -17.51556 -17.09188 -16.44975 -16.28942 -15.97239 -15.58073 -15.25588 -15.12084 -14.69245 -14.55062 -14.31394 -14.09159 -13.93416 -13.57778 -13.40676 -13.11788 -12.90491 -12.59176 -12.29370 -12.14419 -12.05368 -11.93563 -11.76952 -11.71279 -11.56370 -11.33533 -11.23299 -11.17206 -11.00711 -10.90959 -10.78025 -10.58337 -10.17541 -10.06165 -9.63131 -9.49516 -8.82011 -8.46852 -8.46399 -7.97255 -7.70249 -6.07235 -4.11874 0.93972 1.07362 2.45377 2.80781 3.25626 3.28315 3.35672 3.36864 3.41762 3.58625 3.98395 4.25295 4.42659 4.47176 4.65262 4.75639 4.89711 4.92796 5.03004 5.07342 5.16871 5.17736 5.27109 5.29007 5.32805 5.45812 5.53021 5.56274 5.67036 5.69514 5.78648 5.89944 5.93251 5.95197 6.06230 6.14956 6.23242 6.28952 6.33644 6.36543 6.39484 6.53500 6.76844 7.02988 7.17728 7.38665 7.47568 7.48924 7.77938 7.89057 8.19664 8.32786 8.85867 9.01584 9.53534 11.00861 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003489 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.142089 B = 8023.149911 C = 9009.817489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.104 3.896 3 N -0.594 5.594 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.521 6.521 15 C 0.043 3.957 16 N -0.492 5.492 17 C 0.053 3.947 18 C -0.146 4.146 19 H 0.105 0.895 20 C -0.125 4.125 21 C 0.524 3.476 22 O -0.540 6.540 23 N -0.649 5.649 24 C 0.136 3.864 25 C -0.156 4.156 26 C -0.095 4.095 27 C -0.135 4.135 28 C -0.075 4.075 29 C 0.081 3.919 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.103 0.897 39 H 0.060 0.940 40 H 0.068 0.932 41 H 0.142 0.858 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.396 0.604 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -7.926 19.425 21.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.020 4.020 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.086 4.086 16 N -0.209 5.209 17 C -0.074 4.074 18 C -0.168 4.168 19 H 0.123 0.877 20 C -0.183 4.183 21 C 0.313 3.687 22 O -0.417 6.417 23 N -0.287 5.287 24 C 0.038 3.962 25 C -0.177 4.177 26 C -0.114 4.114 27 C -0.155 4.155 28 C -0.095 4.095 29 C -0.017 4.017 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.159 0.841 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.086 0.914 45 H 0.231 0.769 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.264 -6.691 18.962 20.785 hybrid contribution -0.026 -0.716 -0.017 0.716 sum -5.290 -7.407 18.945 21.018 Atomic orbital electron populations 1.22229 0.96801 1.01567 1.02158 1.21443 0.93436 0.84281 1.02825 1.48265 1.63487 1.13226 1.07627 1.19288 0.96356 0.93610 0.77870 1.21452 0.96862 1.31892 1.06239 0.92382 1.24924 0.97822 0.94913 0.96388 1.69935 1.35576 1.33495 1.14320 0.86454 0.84665 0.78075 0.78293 1.19794 1.21024 1.20874 1.19980 0.79103 0.87105 0.84628 1.90549 1.45121 1.17700 1.86392 1.22209 1.01422 0.95308 0.89632 1.55866 1.58100 1.07288 0.99614 1.21748 0.87890 0.91885 1.05902 1.21389 0.98208 1.01746 0.95478 0.87737 1.21553 1.00867 0.94339 1.01533 1.19469 0.87947 0.77171 0.84069 1.90787 1.17843 1.55238 1.77868 1.42516 1.08412 1.48757 1.29063 1.17841 0.84074 0.98200 0.96129 1.21027 0.99405 1.02319 0.94977 1.20825 0.92114 0.98809 0.99636 1.20985 0.98863 1.00748 0.94893 1.21345 0.96290 0.95982 0.95847 1.18033 0.91624 1.00264 0.91791 0.91746 0.92010 0.93603 0.89596 0.91897 0.94995 0.93787 0.92766 0.87850 0.92245 0.91340 0.84086 0.92360 0.90763 0.91372 0.76911 0.85808 0.85490 0.85382 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.19 37.15 0.38 -1.80 16 2 C 0.10 1.57 5.85 -4.05 -0.02 1.54 16 3 N -0.59 -11.63 2.46 -175.06 -0.43 -12.06 16 4 C 0.25 6.14 5.16 -5.19 -0.03 6.11 16 5 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 9 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C 0.51 9.62 6.81 -10.98 -0.07 9.54 16 14 O -0.52 -11.80 13.21 5.56 0.07 -11.73 16 15 C 0.04 0.61 3.37 -4.97 -0.02 0.60 16 16 N -0.49 -7.00 3.88 -176.28 -0.68 -7.68 16 17 C 0.05 0.78 4.05 -6.49 -0.03 0.75 16 18 C -0.15 -2.03 2.43 -93.62 -0.23 -2.26 16 19 H 0.10 1.52 5.49 -51.93 -0.29 1.24 16 20 C -0.12 -1.71 8.49 37.16 0.32 -1.39 16 21 C 0.52 7.22 7.33 -13.67 -0.10 7.12 16 22 O -0.54 -8.73 16.19 5.54 0.09 -8.64 16 23 N -0.65 -7.39 4.83 -11.59 -0.06 -7.45 16 24 C 0.14 1.49 6.63 -84.26 -0.56 0.93 16 25 C -0.16 -1.33 9.54 -39.07 -0.37 -1.70 16 26 C -0.09 -0.72 10.04 -39.82 -0.40 -1.12 16 27 C -0.14 -1.13 10.05 -39.80 -0.40 -1.53 16 28 C -0.07 -0.79 9.52 -39.10 -0.37 -1.17 16 29 C 0.08 0.99 4.91 -84.05 -0.41 0.57 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.57 6.96 -51.93 -0.36 0.21 16 33 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.06 0.78 6.59 -51.93 -0.34 0.44 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.10 1.35 7.48 -51.93 -0.39 0.96 16 39 H 0.06 0.79 5.30 -51.93 -0.28 0.51 16 40 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 41 H 0.14 2.46 5.07 -51.93 -0.26 2.20 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.07 1.04 8.07 -51.93 -0.42 0.62 16 44 H 0.07 0.94 7.70 -51.93 -0.40 0.54 16 45 H 0.40 3.84 7.61 -40.82 -0.31 3.53 16 46 H 0.12 0.78 7.73 -52.49 -0.41 0.37 16 47 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 48 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 49 H 0.14 1.45 8.06 -52.48 -0.42 1.02 16 LS Contribution 388.19 15.07 5.85 5.85 Total: -1.00 -32.62 388.19 -9.35 -41.97 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.17 Total: 5.42 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -2.74 Total: 3.14 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.43 Total: -52.43 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.16 Total: -20.37 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.62 -9.35 -41.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072488203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.272 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds