Wall clock time and date at job start Wed Apr 1 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47126 * 2 1 4 4 C 1.46505 * 119.99928 * 269.99452 * 3 2 1 5 5 C 1.50694 * 109.47635 * 270.00144 * 4 3 2 6 6 H 1.08002 * 119.99685 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00348 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99897 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00185 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47055 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47298 * 119.99825 * 9 7 5 12 12 H 1.48498 * 109.47159 * 239.99925 * 9 7 5 13 13 C 1.34774 * 120.00437 * 90.00057 * 3 2 1 14 14 O 1.21281 * 120.00469 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99593 * 359.97438 * 13 3 2 16 16 N 1.46898 * 109.46901 * 185.46796 * 15 13 3 17 17 C 1.43555 * 111.00122 * 53.74766 * 16 15 13 18 18 C 1.51237 * 113.22929 * 50.72500 * 17 16 15 19 19 H 1.09000 * 108.96530 * 312.58256 * 18 17 16 20 20 C 1.52997 * 109.03020 * 193.69209 * 18 17 16 21 21 C 1.48685 * 111.72179 * 73.11297 * 18 17 16 22 22 O 1.21298 * 116.83511 * 145.11620 * 21 18 17 23 23 N 1.30803 * 126.32760 * 325.14632 * 21 18 17 24 24 C 1.38078 * 134.52725 * 8.86700 * 23 21 18 25 25 C 1.40297 * 115.03497 * 172.68863 * 24 23 21 26 26 C 1.37524 * 121.39690 * 178.35001 * 25 24 23 27 27 C 1.38300 * 119.70748 * 0.02562 * 26 25 24 28 28 C 1.37566 * 119.56155 * 0.37640 * 27 26 25 29 29 C 1.38296 * 126.14527 * 351.68342 * 24 23 21 30 30 H 1.09000 * 109.47287 * 60.00605 * 1 2 3 31 31 H 1.08996 * 109.47194 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47646 * 300.00270 * 1 2 3 33 33 H 1.09002 * 109.47646 * 239.99730 * 2 1 3 34 34 H 1.09000 * 109.47287 * 119.99395 * 2 1 3 35 35 H 1.09000 * 109.46745 * 30.00408 * 4 3 2 36 36 H 1.09000 * 109.46944 * 149.99902 * 4 3 2 37 37 H 0.96995 * 119.99954 * 179.97438 * 8 7 5 38 38 H 1.08995 * 109.46513 * 65.47324 * 15 13 3 39 39 H 1.09001 * 109.47346 * 305.46644 * 15 13 3 40 40 H 1.09002 * 108.73418 * 171.69835 * 17 16 15 41 41 H 1.09001 * 108.73473 * 289.75755 * 17 16 15 42 42 H 1.08995 * 109.47351 * 297.77890 * 20 18 17 43 43 H 1.09002 * 109.47312 * 57.78479 * 20 18 17 44 44 H 1.09006 * 109.46643 * 177.77873 * 20 18 17 45 45 H 0.97002 * 112.73852 * 188.84294 * 23 21 18 46 46 H 1.07999 * 119.30227 * 358.32396 * 25 24 23 47 47 H 1.08001 * 120.14025 * 180.02562 * 26 25 24 48 48 H 1.07996 * 120.22137 * 180.35231 * 27 26 25 49 49 H 1.08006 * 119.34772 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3489 3.1248 -3.6186 9 14 5.9131 2.0955 -3.4175 10 1 6.6005 1.2395 -2.4175 11 1 5.9202 1.4161 -4.7381 12 1 6.6209 3.3964 -3.5263 13 6 2.2429 2.0166 1.1671 14 8 2.6467 3.1602 1.1671 15 6 1.9912 1.3064 2.4723 16 7 2.1833 2.2453 3.5856 17 6 1.3837 3.4242 3.4082 18 6 -0.0682 3.1213 3.1125 19 1 -0.1199 2.3590 2.3352 20 6 -0.7509 4.3944 2.6086 21 6 -0.7852 2.6321 4.3197 22 8 -1.9474 2.9590 4.4364 23 7 -0.2841 1.8838 5.2684 24 6 0.9853 1.4424 5.5848 25 6 1.0912 0.7687 6.8109 26 6 2.2883 0.2445 7.2393 27 6 3.4170 0.3800 6.4516 28 6 3.3305 1.0454 5.2506 29 6 2.1181 1.5897 4.8052 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0955 3.1410 -1.1385 37 1 3.6749 3.5152 -4.4445 38 1 2.6886 0.4749 2.5737 39 1 0.9693 0.9276 2.4887 40 1 1.4382 4.0242 4.3166 41 1 1.7951 4.0053 2.5828 42 1 -0.7202 5.1560 3.3878 43 1 -0.2306 4.7595 1.7230 44 1 -1.7882 4.1747 2.3558 45 1 -0.9571 1.5673 5.8912 46 1 0.2142 0.6597 7.4316 47 1 2.3467 -0.2708 8.1867 48 1 4.3600 -0.0333 6.7773 49 1 4.2142 1.1496 4.6384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072488203.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:48 Heat of formation + Delta-G solvation = -32.512744 kcal Electronic energy + Delta-G solvation = -31980.266428 eV Core-core repulsion = 27907.321268 eV Total energy + Delta-G solvation = -4072.945160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.81274 -40.93336 -40.10138 -38.24702 -36.83215 -36.31096 -34.91491 -34.47240 -31.75034 -31.21884 -30.70336 -29.76632 -28.25712 -26.20444 -25.84081 -24.79948 -24.05883 -23.73453 -22.18764 -20.70855 -19.95948 -19.10205 -18.64507 -18.46472 -18.19476 -17.57307 -17.07730 -16.78801 -16.43087 -16.39388 -16.07496 -15.82694 -15.45717 -15.19558 -14.95652 -14.73301 -14.60862 -14.32864 -14.26583 -13.84441 -13.58442 -13.38859 -13.31654 -13.17481 -13.10404 -12.95448 -12.83940 -12.67945 -12.53399 -12.47882 -12.42356 -12.18086 -12.12689 -11.88915 -11.85939 -11.65644 -11.21224 -10.63454 -10.62679 -10.03046 -9.46271 -9.31113 -8.86451 -8.20246 -6.34308 0.12784 0.36086 1.37940 1.40324 1.45540 1.51753 1.76905 1.88421 2.13880 2.40969 2.72223 2.82846 3.09914 3.22068 3.50633 3.56786 3.74489 3.83853 3.94733 3.99821 4.08836 4.18306 4.26159 4.35225 4.38063 4.43496 4.53077 4.56359 4.61817 4.73835 4.76872 4.88046 4.91830 4.97677 5.02540 5.05034 5.09446 5.10896 5.23477 5.33294 5.41613 5.51566 5.60375 5.62203 5.67180 5.87494 5.91429 6.08923 6.21866 6.50804 6.72266 6.78118 6.79869 7.30930 7.49031 8.86821 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013068 B = 0.003489 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.142089 B = 8023.149911 C = 9009.817489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.600 5.600 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.272 1.272 12 H -0.284 1.284 13 C 0.500 3.500 14 O -0.566 6.566 15 C 0.060 3.940 16 N -0.503 5.503 17 C 0.065 3.935 18 C -0.141 4.141 19 H 0.097 0.903 20 C -0.120 4.120 21 C 0.529 3.471 22 O -0.569 6.569 23 N -0.637 5.637 24 C 0.120 3.880 25 C -0.149 4.149 26 C -0.085 4.085 27 C -0.125 4.125 28 C -0.089 4.089 29 C 0.059 3.941 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.020 0.980 36 H 0.000 1.000 37 H 0.266 0.734 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.407 0.593 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.153 0.847 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.745 -10.883 22.453 25.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.332 5.332 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.190 4.190 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.190 1.190 11 H -0.197 1.197 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.445 6.445 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.063 4.063 18 C -0.164 4.164 19 H 0.115 0.885 20 C -0.179 4.179 21 C 0.318 3.682 22 O -0.449 6.449 23 N -0.276 5.276 24 C 0.022 3.978 25 C -0.169 4.169 26 C -0.104 4.104 27 C -0.144 4.144 28 C -0.109 4.109 29 C -0.039 4.039 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.038 0.962 36 H 0.018 0.982 37 H 0.075 0.925 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.126 0.874 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.243 0.757 46 H 0.168 0.832 47 H 0.179 0.821 48 H 0.171 0.829 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.571 -9.714 22.037 24.513 hybrid contribution -0.196 0.166 -0.844 0.882 sum -4.767 -9.548 21.193 23.728 Atomic orbital electron populations 1.22157 0.94997 1.03471 1.01296 1.21740 0.94901 0.81662 1.04082 1.48245 1.63813 1.14951 1.06184 1.18688 0.95187 0.91603 0.80099 1.21733 0.97861 1.31732 1.06358 0.92739 1.25816 1.02149 0.94571 0.96509 1.70055 1.37602 1.34401 1.14808 0.85402 0.79327 0.77935 0.78351 1.18977 1.19678 1.20957 1.20818 0.77840 0.86716 0.85854 1.90545 1.46944 1.19825 1.87225 1.22066 1.02733 0.95012 0.87012 1.55776 1.58319 1.07274 1.00621 1.21436 0.88133 0.92235 1.04495 1.21283 0.97829 1.01452 0.95813 0.88518 1.21486 1.00494 0.94693 1.01191 1.19212 0.87382 0.77412 0.84238 1.90776 1.18844 1.56686 1.78576 1.42319 1.09129 1.47781 1.28382 1.17995 0.83252 0.99357 0.97198 1.21355 1.00941 1.00744 0.93885 1.21259 0.91112 0.97537 1.00461 1.21314 1.00361 0.99146 0.93619 1.21384 0.95469 0.96970 0.97033 1.18125 0.92899 1.01671 0.91177 0.93859 0.88608 0.93250 0.90409 0.88493 0.96185 0.98200 0.92531 0.85892 0.90621 0.91177 0.87382 0.91769 0.92059 0.91537 0.75676 0.83185 0.82057 0.82928 0.85502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 10.19 71.98 0.73 -3.24 16 2 C 0.10 2.89 5.85 86.38 0.51 3.40 16 3 N -0.60 -24.31 2.46 -826.16 -2.03 -26.34 16 4 C 0.27 13.94 5.16 85.63 0.44 14.38 16 5 C -0.54 -30.39 9.39 25.60 0.24 -30.15 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.48 5.46 84.65 0.46 0.94 16 8 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 9 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 12 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 13 C 0.50 19.67 6.81 87.66 0.60 20.27 16 14 O -0.57 -27.34 13.21 -3.03 -0.04 -27.38 16 15 C 0.06 1.69 3.37 85.56 0.29 1.98 16 16 N -0.50 -14.26 3.88 -711.62 -2.76 -17.02 16 17 C 0.06 1.98 4.05 86.35 0.35 2.33 16 18 C -0.14 -4.05 2.43 -12.74 -0.03 -4.08 16 19 H 0.10 2.90 5.49 -2.39 -0.01 2.89 16 20 C -0.12 -3.50 8.49 71.98 0.61 -2.89 16 21 C 0.53 14.27 7.33 87.64 0.64 14.91 16 22 O -0.57 -18.19 16.19 -3.09 -0.05 -18.24 16 23 N -0.64 -13.33 4.83 -311.13 -1.50 -14.84 16 24 C 0.12 2.31 6.63 38.67 0.26 2.56 16 25 C -0.15 -1.89 9.54 22.60 0.22 -1.67 16 26 C -0.09 -0.86 10.04 22.12 0.22 -0.64 16 27 C -0.13 -1.58 10.05 22.13 0.22 -1.36 16 28 C -0.09 -1.68 9.52 22.58 0.22 -1.47 16 29 C 0.06 1.33 4.91 38.55 0.19 1.52 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.18 6.96 -2.39 -0.02 1.16 16 33 H 0.08 2.41 8.07 -2.39 -0.02 2.39 16 34 H 0.10 2.18 6.59 -2.39 -0.02 2.17 16 35 H 0.02 1.08 8.07 -2.39 -0.02 1.06 16 36 H 0.00 -0.01 7.42 -2.39 -0.02 -0.02 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 38 H 0.12 2.99 7.48 -2.39 -0.02 2.97 16 39 H 0.08 1.90 5.30 -2.39 -0.01 1.89 16 40 H 0.07 2.05 8.01 -2.39 -0.02 2.04 16 41 H 0.11 4.09 5.07 -2.39 -0.01 4.08 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.06 1.90 8.07 -2.39 -0.02 1.88 16 44 H 0.07 1.93 7.70 -2.38 -0.02 1.91 16 45 H 0.41 6.87 7.61 -92.71 -0.71 6.16 16 46 H 0.15 1.12 7.73 -2.91 -0.02 1.10 16 47 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 48 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 49 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -75.08 388.19 2.36 -72.72 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.27 Total: 23.21 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: 6.16 Total: 16.79 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -6.01 Total: -113.65 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -0.09 Total: -45.61 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -75.08 2.36 -72.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072488203.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.210 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds