Wall clock time and date at job start Wed Apr 1 2020 04:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47467 * 2 1 4 4 C 1.46506 * 120.00167 * 270.00282 * 3 2 1 5 5 C 1.50696 * 109.46629 * 269.99738 * 4 3 2 6 6 H 1.07997 * 120.00656 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99452 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00100 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46807 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46719 * 120.00089 * 9 7 5 12 12 H 1.48491 * 109.47406 * 240.00441 * 9 7 5 13 13 C 1.34778 * 119.99985 * 89.99512 * 3 2 1 14 14 O 1.21285 * 119.99900 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00243 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47232 * 174.00033 * 15 13 3 17 17 C 1.43554 * 110.99944 * 294.10492 * 16 15 13 18 18 C 1.51232 * 113.25055 * 309.11830 * 17 16 15 19 19 H 1.08993 * 109.02744 * 47.34901 * 18 17 16 20 20 C 1.52994 * 109.02789 * 166.18768 * 18 17 16 21 21 C 1.48657 * 111.73572 * 286.76614 * 18 17 16 22 22 O 1.21299 * 116.84592 * 214.87830 * 21 18 17 23 23 N 1.30813 * 126.31754 * 35.16526 * 21 18 17 24 24 C 1.38147 * 134.45961 * 351.08439 * 23 21 18 25 25 C 1.40306 * 114.99916 * 187.15972 * 24 23 21 26 26 C 1.37516 * 121.40195 * 181.30768 * 25 24 23 27 27 C 1.38298 * 119.70255 * 359.95366 * 26 25 24 28 28 C 1.37566 * 119.56193 * 359.69749 * 27 26 25 29 29 C 1.38273 * 126.17832 * 7.89289 * 24 23 21 30 30 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47488 * 300.00149 * 1 2 3 32 32 H 1.09003 * 109.47055 * 60.00012 * 1 2 3 33 33 H 1.09005 * 109.47149 * 239.99904 * 2 1 3 34 34 H 1.09003 * 109.47055 * 119.99988 * 2 1 3 35 35 H 1.09005 * 109.46784 * 29.99787 * 4 3 2 36 36 H 1.08997 * 109.46992 * 149.99572 * 4 3 2 37 37 H 0.96998 * 119.99754 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.47107 * 53.99601 * 15 13 3 39 39 H 1.09005 * 109.46903 * 294.00133 * 15 13 3 40 40 H 1.08999 * 108.72853 * 188.14106 * 17 16 15 41 41 H 1.08995 * 108.62751 * 70.02320 * 17 16 15 42 42 H 1.08999 * 109.47556 * 182.23368 * 20 18 17 43 43 H 1.09007 * 109.47233 * 302.22959 * 20 18 17 44 44 H 1.09003 * 109.47675 * 62.22569 * 20 18 17 45 45 H 0.97002 * 112.74203 * 171.46263 * 23 21 18 46 46 H 1.07995 * 119.29583 * 1.28024 * 25 24 23 47 47 H 1.07996 * 120.14508 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.22243 * 179.67434 * 27 26 25 49 49 H 1.08001 * 119.34681 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9136 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9214 1.4171 -4.7372 12 1 6.6205 3.3979 -3.5256 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.4446 2.1517 3.5850 17 6 3.8695 2.3234 3.5544 18 6 4.6257 1.0187 3.4405 19 1 4.1765 0.4153 2.6517 20 6 6.0804 1.3159 3.0715 21 6 4.5956 0.2520 4.7138 22 8 5.5878 -0.3882 4.9912 23 7 3.6009 0.1966 5.5615 24 6 2.4016 0.8699 5.6913 25 6 1.6886 0.5897 6.8667 26 6 0.4659 1.1669 7.1178 27 6 -0.0797 2.0440 6.1982 28 6 0.6110 2.3341 5.0445 29 6 1.8604 1.7566 4.7787 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6750 3.5156 -4.4443 38 1 2.5414 0.3645 2.4848 39 1 0.9259 1.1061 2.5781 40 1 4.1807 2.8297 4.4681 41 1 4.1261 2.9522 2.7019 42 1 6.6229 0.3785 2.9485 43 1 6.1109 1.8783 2.1382 44 1 6.5439 1.9027 3.8645 45 1 3.7390 -0.4632 6.2590 46 1 2.1087 -0.0940 7.5894 47 1 -0.0657 0.9364 8.0292 48 1 -1.0418 2.4980 6.3845 49 1 0.1819 3.0198 4.3289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072488205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:54 Heat of formation + Delta-G solvation = -14.330817 kcal Electronic energy + Delta-G solvation = -31927.342098 eV Core-core repulsion = 27855.185365 eV Total energy + Delta-G solvation = -4072.156732 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.75924 -39.54203 -39.04819 -37.14881 -35.40540 -35.24162 -33.41608 -32.82429 -30.46010 -30.14692 -29.74867 -28.43499 -26.59595 -25.02998 -24.82617 -23.08267 -22.99579 -22.67594 -21.07424 -19.77872 -18.47506 -18.05384 -17.49716 -17.12788 -16.49177 -16.19781 -15.94554 -15.68445 -15.24871 -15.05457 -14.78016 -14.46379 -14.28033 -14.04868 -13.82313 -13.64538 -13.41737 -13.00282 -12.83418 -12.63645 -12.31362 -12.13934 -12.02421 -11.95006 -11.75438 -11.62229 -11.53888 -11.44312 -11.21577 -11.13024 -10.98789 -10.92143 -10.76365 -10.57102 -10.16499 -10.03700 -9.64742 -9.54384 -8.84880 -8.46525 -8.45952 -7.95550 -7.69981 -6.06766 -4.11518 0.93724 1.06792 2.45865 2.80431 3.28188 3.29008 3.36626 3.39653 3.40964 3.57463 4.02852 4.23843 4.42721 4.46376 4.64524 4.74453 4.88138 4.95975 5.02121 5.04859 5.14104 5.18183 5.27456 5.29029 5.34950 5.39157 5.56330 5.59017 5.68880 5.73186 5.78044 5.92068 5.95109 5.98182 6.04690 6.17485 6.21615 6.27572 6.29456 6.36545 6.42296 6.52542 6.74947 7.05579 7.17237 7.41879 7.45475 7.51373 7.78456 7.89695 8.20683 8.37156 8.87611 9.05790 9.53947 11.01251 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.003714 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.507587 B = 7536.560450 C = 8788.229100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.520 6.520 15 C 0.040 3.960 16 N -0.491 5.491 17 C 0.068 3.932 18 C -0.150 4.150 19 H 0.110 0.890 20 C -0.126 4.126 21 C 0.525 3.475 22 O -0.539 6.539 23 N -0.649 5.649 24 C 0.137 3.863 25 C -0.156 4.156 26 C -0.095 4.095 27 C -0.136 4.136 28 C -0.075 4.075 29 C 0.082 3.918 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.072 0.928 41 H 0.123 0.877 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.397 0.603 46 H 0.124 0.876 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -6.946 19.509 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.396 6.396 15 C -0.088 4.088 16 N -0.207 5.207 17 C -0.060 4.060 18 C -0.172 4.172 19 H 0.127 0.873 20 C -0.184 4.184 21 C 0.314 3.686 22 O -0.416 6.416 23 N -0.288 5.288 24 C 0.038 3.962 25 C -0.177 4.177 26 C -0.114 4.114 27 C -0.155 4.155 28 C -0.094 4.094 29 C -0.017 4.017 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.231 0.769 46 H 0.142 0.858 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.885 -5.926 19.078 21.130 hybrid contribution 1.194 -1.222 0.027 1.709 sum -5.691 -7.148 19.105 21.178 Atomic orbital electron populations 1.22219 0.96647 1.01462 1.02410 1.21433 0.93662 0.84326 1.02547 1.48269 1.63865 1.13119 1.07658 1.19273 0.96256 0.93653 0.77927 1.21447 0.96877 1.31861 1.06235 0.92458 1.24922 0.97751 0.94915 0.96412 1.69938 1.35580 1.33444 1.14305 0.86486 0.84745 0.78083 0.78384 1.19759 1.21008 1.20861 1.20005 0.79238 0.87147 0.84510 1.90654 1.44805 1.17482 1.86681 1.22280 1.02202 0.94374 0.89949 1.55795 1.11851 1.51745 1.01310 1.21404 0.83403 0.95350 1.05858 1.21407 1.01585 0.99254 0.94963 0.87289 1.21569 0.91853 1.02843 1.02158 1.19412 0.81723 0.81956 0.85490 1.90792 1.30926 1.44508 1.75385 1.42546 1.17088 1.39049 1.30094 1.17854 0.86770 0.94683 0.96920 1.21028 0.96750 1.03912 0.96010 1.20822 0.94638 0.96580 0.99338 1.20983 1.00538 0.99540 0.94445 1.21347 0.93145 0.97730 0.97223 1.18013 0.95578 0.96870 0.91216 0.92171 0.93095 0.91855 0.89782 0.92212 0.95052 0.93795 0.92771 0.91859 0.88014 0.90918 0.85914 0.91248 0.90652 0.92356 0.76868 0.85793 0.85487 0.85392 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.10 1.58 5.96 -4.05 -0.02 1.56 16 3 N -0.60 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.25 6.19 5.16 -5.19 -0.03 6.17 16 5 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 13 C 0.51 9.73 7.34 -10.99 -0.08 9.65 16 14 O -0.52 -12.10 14.13 5.55 0.08 -12.02 16 15 C 0.04 0.58 3.80 -4.98 -0.02 0.56 16 16 N -0.49 -6.97 3.66 -176.28 -0.65 -7.61 16 17 C 0.07 1.00 4.22 -6.49 -0.03 0.97 16 18 C -0.15 -2.12 2.51 -93.64 -0.24 -2.36 16 19 H 0.11 1.61 5.73 -51.93 -0.30 1.31 16 20 C -0.13 -1.80 8.48 37.15 0.32 -1.48 16 21 C 0.53 7.29 7.32 -13.68 -0.10 7.19 16 22 O -0.54 -8.82 16.19 5.54 0.09 -8.73 16 23 N -0.65 -7.37 4.83 -11.59 -0.06 -7.43 16 24 C 0.14 1.48 6.63 -84.23 -0.56 0.92 16 25 C -0.16 -1.31 9.54 -39.07 -0.37 -1.68 16 26 C -0.09 -0.71 10.04 -39.82 -0.40 -1.11 16 27 C -0.14 -1.11 10.05 -39.80 -0.40 -1.51 16 28 C -0.07 -0.78 9.48 -39.10 -0.37 -1.15 16 29 C 0.08 0.98 4.84 -84.04 -0.41 0.58 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.76 6.28 -51.93 -0.33 0.44 16 35 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.06 0.86 4.74 -51.93 -0.25 0.61 16 39 H 0.10 1.28 7.02 -51.93 -0.36 0.92 16 40 H 0.07 1.02 8.01 -51.93 -0.42 0.61 16 41 H 0.12 2.15 5.97 -51.93 -0.31 1.84 16 42 H 0.07 1.01 7.70 -51.93 -0.40 0.61 16 43 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.40 3.83 7.60 -40.82 -0.31 3.52 16 46 H 0.12 0.77 7.72 -52.49 -0.41 0.36 16 47 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 49 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 390.38 15.07 5.88 5.88 Total: -1.00 -32.96 390.38 -9.30 -42.25 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -7.18 Total: 5.19 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -2.75 Total: 3.52 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.39 Total: -52.54 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.96 -9.30 -42.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072488205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.923 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds