Wall clock time and date at job start Wed Apr 1 2020 04:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47467 * 2 1 4 4 C 1.46506 * 120.00167 * 270.00282 * 3 2 1 5 5 C 1.50696 * 109.46629 * 269.99738 * 4 3 2 6 6 H 1.07997 * 120.00656 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99452 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00100 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99932 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46807 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46719 * 120.00089 * 9 7 5 12 12 H 1.48491 * 109.47406 * 240.00441 * 9 7 5 13 13 C 1.34778 * 119.99985 * 89.99512 * 3 2 1 14 14 O 1.21285 * 119.99900 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00243 * 0.02562 * 13 3 2 16 16 N 1.46897 * 109.47232 * 174.00033 * 15 13 3 17 17 C 1.43554 * 110.99944 * 294.10492 * 16 15 13 18 18 C 1.51232 * 113.25055 * 309.11830 * 17 16 15 19 19 H 1.08993 * 109.02744 * 47.34901 * 18 17 16 20 20 C 1.52994 * 109.02789 * 166.18768 * 18 17 16 21 21 C 1.48657 * 111.73572 * 286.76614 * 18 17 16 22 22 O 1.21299 * 116.84592 * 214.87830 * 21 18 17 23 23 N 1.30813 * 126.31754 * 35.16526 * 21 18 17 24 24 C 1.38147 * 134.45961 * 351.08439 * 23 21 18 25 25 C 1.40306 * 114.99916 * 187.15972 * 24 23 21 26 26 C 1.37516 * 121.40195 * 181.30768 * 25 24 23 27 27 C 1.38298 * 119.70255 * 359.95366 * 26 25 24 28 28 C 1.37566 * 119.56193 * 359.69749 * 27 26 25 29 29 C 1.38273 * 126.17832 * 7.89289 * 24 23 21 30 30 H 1.09003 * 109.47118 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47488 * 300.00149 * 1 2 3 32 32 H 1.09003 * 109.47055 * 60.00012 * 1 2 3 33 33 H 1.09005 * 109.47149 * 239.99904 * 2 1 3 34 34 H 1.09003 * 109.47055 * 119.99988 * 2 1 3 35 35 H 1.09005 * 109.46784 * 29.99787 * 4 3 2 36 36 H 1.08997 * 109.46992 * 149.99572 * 4 3 2 37 37 H 0.96998 * 119.99754 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.47107 * 53.99601 * 15 13 3 39 39 H 1.09005 * 109.46903 * 294.00133 * 15 13 3 40 40 H 1.08999 * 108.72853 * 188.14106 * 17 16 15 41 41 H 1.08995 * 108.62751 * 70.02320 * 17 16 15 42 42 H 1.08999 * 109.47556 * 182.23368 * 20 18 17 43 43 H 1.09007 * 109.47233 * 302.22959 * 20 18 17 44 44 H 1.09003 * 109.47675 * 62.22569 * 20 18 17 45 45 H 0.97002 * 112.74203 * 171.46263 * 23 21 18 46 46 H 1.07995 * 119.29583 * 1.28024 * 25 24 23 47 47 H 1.07996 * 120.14508 * 179.97438 * 26 25 24 48 48 H 1.08002 * 120.22243 * 179.67434 * 27 26 25 49 49 H 1.08001 * 119.34681 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3896 -2.8779 8 7 3.3491 3.1257 -3.6180 9 14 5.9136 2.0966 -3.4169 10 1 6.6011 1.2414 -2.4164 11 1 5.9214 1.4171 -4.7372 12 1 6.6205 3.3979 -3.5256 13 6 2.2429 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.4446 2.1517 3.5850 17 6 3.8695 2.3234 3.5544 18 6 4.6257 1.0187 3.4405 19 1 4.1765 0.4153 2.6517 20 6 6.0804 1.3159 3.0715 21 6 4.5956 0.2520 4.7138 22 8 5.5878 -0.3882 4.9912 23 7 3.6009 0.1966 5.5615 24 6 2.4016 0.8699 5.6913 25 6 1.6886 0.5897 6.8667 26 6 0.4659 1.1669 7.1178 27 6 -0.0797 2.0440 6.1982 28 6 0.6110 2.3341 5.0445 29 6 1.8604 1.7566 4.7787 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6877 -2.0284 36 1 2.0956 3.1410 -1.1384 37 1 3.6750 3.5156 -4.4443 38 1 2.5414 0.3645 2.4848 39 1 0.9259 1.1061 2.5781 40 1 4.1807 2.8297 4.4681 41 1 4.1261 2.9522 2.7019 42 1 6.6229 0.3785 2.9485 43 1 6.1109 1.8783 2.1382 44 1 6.5439 1.9027 3.8645 45 1 3.7390 -0.4632 6.2590 46 1 2.1087 -0.0940 7.5894 47 1 -0.0657 0.9364 8.0292 48 1 -1.0418 2.4980 6.3845 49 1 0.1819 3.0198 4.3289 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072488205.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:52 Heat of formation + Delta-G solvation = -35.400870 kcal Electronic energy + Delta-G solvation = -31928.255764 eV Core-core repulsion = 27855.185365 eV Total energy + Delta-G solvation = -4073.070398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.77963 -40.86922 -40.08460 -38.29747 -36.82347 -36.30513 -34.92063 -34.46825 -31.70809 -31.22469 -30.69869 -29.76012 -28.27463 -26.21004 -25.85283 -24.76488 -24.08152 -23.73962 -22.16750 -20.71752 -19.89884 -19.11251 -18.62150 -18.50254 -18.23078 -17.47826 -17.16590 -16.81142 -16.47682 -16.34231 -16.02255 -15.82737 -15.42993 -15.19833 -14.86940 -14.68007 -14.64928 -14.33895 -14.23918 -13.78675 -13.60486 -13.38884 -13.32630 -13.19787 -13.12686 -12.96496 -12.81799 -12.68502 -12.52267 -12.47874 -12.40311 -12.16132 -12.12378 -11.87692 -11.86263 -11.67000 -11.18962 -10.76264 -10.63581 -10.03842 -9.42086 -9.35041 -8.87107 -8.21213 -6.35038 0.13134 0.36158 1.35938 1.38281 1.45965 1.49439 1.80995 1.88149 2.14408 2.39007 2.73461 2.82828 3.08813 3.19896 3.47965 3.59840 3.70173 3.83852 3.89400 3.97757 4.12706 4.17789 4.19871 4.36734 4.42808 4.43844 4.52868 4.60300 4.62757 4.72794 4.76146 4.89013 4.92735 4.98983 5.01597 5.07025 5.07229 5.10205 5.24720 5.38257 5.41194 5.51562 5.59514 5.61913 5.65958 5.87881 5.91233 6.08567 6.21413 6.49753 6.72628 6.78583 6.81467 7.30628 7.51548 8.85843 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.003714 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.507587 B = 7536.560450 C = 8788.229100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.602 5.602 4 C 0.266 3.734 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.271 1.271 12 H -0.283 1.283 13 C 0.500 3.500 14 O -0.570 6.570 15 C 0.058 3.942 16 N -0.502 5.502 17 C 0.079 3.921 18 C -0.146 4.146 19 H 0.103 0.897 20 C -0.122 4.122 21 C 0.530 3.470 22 O -0.568 6.568 23 N -0.637 5.637 24 C 0.121 3.879 25 C -0.148 4.148 26 C -0.085 4.085 27 C -0.125 4.125 28 C -0.089 4.089 29 C 0.059 3.941 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.021 0.979 36 H -0.001 1.001 37 H 0.266 0.734 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.064 0.936 45 H 0.408 0.592 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.153 0.847 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.760 -9.115 22.530 25.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.334 5.334 4 C 0.144 3.856 5 C -0.576 4.576 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.568 5.568 9 Si 0.786 3.214 10 H -0.191 1.191 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.288 3.712 14 O -0.449 6.449 15 C -0.070 4.070 16 N -0.218 5.218 17 C -0.049 4.049 18 C -0.168 4.168 19 H 0.120 0.880 20 C -0.180 4.180 21 C 0.319 3.681 22 O -0.448 6.448 23 N -0.276 5.276 24 C 0.023 3.977 25 C -0.168 4.168 26 C -0.103 4.103 27 C -0.144 4.144 28 C -0.109 4.109 29 C -0.038 4.038 30 H 0.113 0.887 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.017 0.983 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.244 0.756 46 H 0.169 0.831 47 H 0.180 0.820 48 H 0.171 0.829 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.162 -8.135 22.141 24.960 hybrid contribution 1.426 -0.499 -0.811 1.714 sum -6.736 -8.634 21.330 23.977 Atomic orbital electron populations 1.22147 0.94299 1.03513 1.01893 1.21736 0.95575 0.81588 1.03538 1.48258 1.64109 1.14856 1.06206 1.18676 0.95135 0.91568 0.80192 1.21717 0.97859 1.31668 1.06319 0.92877 1.25780 1.01950 0.94592 0.96540 1.70052 1.37552 1.34345 1.14803 0.85464 0.79574 0.77977 0.78411 1.19117 1.19647 1.20847 1.20884 0.77802 0.86744 0.85815 1.90630 1.46827 1.19897 1.87540 1.22124 1.03772 0.93835 0.87227 1.55670 1.11234 1.52506 1.02436 1.21117 0.84328 0.95122 1.04334 1.21308 1.01096 0.98952 0.95484 0.87981 1.21502 0.92312 1.02517 1.01703 1.19126 0.81990 0.81533 0.85436 1.90782 1.32139 1.45885 1.76042 1.42338 1.16725 1.38959 1.29558 1.17994 0.86725 0.95147 0.97856 1.21356 0.96677 1.03650 0.95163 1.21257 0.94048 0.95015 1.00009 1.21310 1.01056 0.98803 0.93211 1.21374 0.92993 0.98146 0.98346 1.18095 0.96459 0.98513 0.90721 0.88743 0.92027 0.93972 0.90857 0.89134 0.96112 0.98328 0.92507 0.90572 0.85550 0.90580 0.89456 0.91510 0.92095 0.91650 0.75603 0.83144 0.82033 0.82930 0.85682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 10.24 71.98 0.74 -3.04 16 2 C 0.10 2.90 5.96 86.38 0.51 3.42 16 3 N -0.60 -24.62 2.46 -826.15 -2.03 -26.65 16 4 C 0.27 14.05 5.16 85.63 0.44 14.50 16 5 C -0.54 -30.49 9.39 25.60 0.24 -30.25 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.59 5.46 84.66 0.46 1.06 16 8 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 9 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.50 19.94 7.34 87.66 0.64 20.58 16 14 O -0.57 -28.26 14.13 -3.04 -0.04 -28.30 16 15 C 0.06 1.65 3.80 85.56 0.32 1.98 16 16 N -0.50 -14.23 3.66 -711.63 -2.60 -16.83 16 17 C 0.08 2.42 4.22 86.35 0.36 2.78 16 18 C -0.15 -4.20 2.51 -12.75 -0.03 -4.23 16 19 H 0.10 3.05 5.73 -2.39 -0.01 3.03 16 20 C -0.12 -3.61 8.48 71.98 0.61 -3.00 16 21 C 0.53 14.25 7.32 87.63 0.64 14.89 16 22 O -0.57 -18.22 16.19 -3.09 -0.05 -18.27 16 23 N -0.64 -13.13 4.83 -311.10 -1.50 -14.64 16 24 C 0.12 2.28 6.63 38.66 0.26 2.54 16 25 C -0.15 -1.82 9.54 22.60 0.22 -1.61 16 26 C -0.08 -0.83 10.04 22.11 0.22 -0.61 16 27 C -0.12 -1.54 10.05 22.12 0.22 -1.32 16 28 C -0.09 -1.67 9.48 22.58 0.21 -1.46 16 29 C 0.06 1.33 4.84 38.54 0.19 1.52 16 30 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.32 7.41 -2.39 -0.02 1.30 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 2.33 8.07 -2.38 -0.02 2.31 16 34 H 0.09 2.12 6.28 -2.39 -0.01 2.11 16 35 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 36 H 0.00 -0.09 7.42 -2.39 -0.02 -0.10 16 37 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 38 H 0.08 1.97 4.74 -2.39 -0.01 1.96 16 39 H 0.13 2.94 7.02 -2.38 -0.02 2.92 16 40 H 0.08 2.20 8.01 -2.39 -0.02 2.18 16 41 H 0.09 3.31 5.97 -2.39 -0.01 3.30 16 42 H 0.07 1.98 7.70 -2.39 -0.02 1.97 16 43 H 0.06 1.94 8.07 -2.38 -0.02 1.92 16 44 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.41 6.75 7.60 -92.71 -0.71 6.05 16 46 H 0.15 1.07 7.72 -2.91 -0.02 1.05 16 47 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 48 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -76.37 390.38 2.62 -73.75 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.27 Total: 21.80 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: 6.27 Total: 17.75 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -5.85 Total: -113.70 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.09 Total: -46.57 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.37 2.62 -73.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072488205.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.350 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds