Wall clock time and date at job start Wed Apr 1 2020 04:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47248 * 2 1 4 4 C 1.46888 * 111.00187 * 199.99025 * 3 2 1 5 5 C 1.50706 * 109.47349 * 66.04451 * 4 3 2 6 6 H 1.08000 * 119.99516 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00540 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99543 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00401 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47187 * 59.99785 * 9 7 5 11 11 H 1.48499 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47002 * 300.00514 * 9 7 5 13 13 C 1.46904 * 110.99863 * 76.03359 * 3 2 1 14 14 C 1.50697 * 109.46876 * 200.33970 * 13 3 2 15 15 O 1.21281 * 120.00263 * 355.98354 * 14 13 3 16 16 N 1.34781 * 119.99590 * 175.98544 * 14 13 3 17 17 C 1.39922 * 119.99782 * 184.49885 * 16 14 13 18 18 C 1.38948 * 120.03769 * 324.24980 * 17 16 14 19 19 C 1.38131 * 120.07148 * 180.02562 * 18 17 16 20 20 C 1.38190 * 120.14298 * 359.74498 * 19 18 17 21 21 C 1.38897 * 120.06304 * 0.51072 * 20 19 18 22 22 N 1.39928 * 120.03449 * 179.76645 * 21 20 19 23 23 C 1.46768 * 124.34505 * 354.19073 * 22 21 20 24 24 C 1.54483 * 105.47030 * 162.98584 * 23 22 21 25 25 C 1.54629 * 101.76456 * 25.41363 * 24 23 22 26 26 C 1.34419 * 124.35254 * 174.19064 * 22 21 20 27 27 O 1.21283 * 124.93954 * 0.67118 * 26 22 21 28 28 C 1.38724 * 120.03541 * 144.27134 * 17 16 14 29 29 H 1.08994 * 109.47512 * 304.75513 * 1 2 3 30 30 H 1.09002 * 109.47078 * 64.75894 * 1 2 3 31 31 H 1.09009 * 109.46787 * 184.75734 * 1 2 3 32 32 H 1.08998 * 109.47807 * 239.99730 * 2 1 3 33 33 H 1.09002 * 109.47325 * 119.99845 * 2 1 3 34 34 H 1.09005 * 109.47297 * 186.04126 * 4 3 2 35 35 H 1.08999 * 109.47449 * 306.04862 * 4 3 2 36 36 H 0.96998 * 119.99812 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46592 * 80.33975 * 13 3 2 38 38 H 1.09003 * 109.47481 * 320.34189 * 13 3 2 39 39 H 0.96998 * 120.00037 * 4.50111 * 16 14 13 40 40 H 1.07998 * 119.96054 * 0.02562 * 18 17 16 41 41 H 1.08001 * 119.93295 * 180.02562 * 19 18 17 42 42 H 1.07997 * 119.96857 * 180.27642 * 20 19 18 43 43 H 1.08994 * 110.24827 * 43.98257 * 23 22 21 44 44 H 1.09003 * 110.24341 * 281.98019 * 23 22 21 45 45 H 1.09004 * 110.96705 * 267.29369 * 24 23 22 46 46 H 1.08997 * 111.00024 * 143.54807 * 24 23 22 47 47 H 1.09005 * 110.48354 * 216.52465 * 25 24 23 48 48 H 1.08997 * 110.48269 * 93.88202 * 25 24 23 49 49 H 1.07999 * 120.06713 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4102 1.4518 -0.4688 5 6 3.4709 1.0500 -1.9200 6 1 2.5669 0.7724 -2.4417 7 6 4.6804 1.0368 -2.5818 8 7 5.7813 1.3744 -1.9463 9 14 4.7555 0.5395 -4.3807 10 1 3.9165 1.4638 -5.1852 11 1 6.1611 0.6081 -4.8550 12 1 4.2484 -0.8480 -4.5323 13 6 1.8831 1.9917 1.3309 14 6 1.9078 3.4930 1.2035 15 8 2.1003 4.0068 0.1219 16 7 1.7160 4.2649 2.2917 17 6 1.6450 5.6560 2.1589 18 6 2.4369 6.3065 1.2206 19 6 2.3677 7.6798 1.0893 20 6 1.5074 8.4106 1.8865 21 6 0.7170 7.7669 2.8299 22 7 -0.1503 8.5080 3.6402 23 6 -0.2141 9.9742 3.6607 24 6 -1.5598 10.3186 4.3367 25 6 -1.8098 9.0606 5.2005 26 6 -1.0319 7.9687 4.4996 27 8 -1.1788 6.7799 4.6894 28 6 0.7841 6.3873 2.9642 29 1 -0.3634 0.5858 0.8443 30 1 -0.3633 0.4382 -0.9296 31 1 -0.3633 -1.0242 0.0852 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7825 2.4702 -0.3579 35 1 4.0258 0.7734 0.1219 36 1 6.6322 1.3647 -2.4117 37 1 2.7085 1.6671 1.9645 38 1 0.9385 1.6803 1.7770 39 1 1.6273 3.8560 3.1668 40 1 3.1072 5.7377 0.5933 41 1 2.9839 8.1831 0.3590 42 1 1.4523 9.4838 1.7784 43 1 -0.1912 10.3670 2.6443 44 1 0.6144 10.3797 4.2414 45 1 -2.3481 10.4451 3.5945 46 1 -1.4674 11.2078 4.9602 47 1 -2.8723 8.8181 5.2226 48 1 -1.4306 9.2105 6.2113 49 1 0.1681 5.8841 3.6948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081056337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:05 Heat of formation + Delta-G solvation = -19.511516 kcal Electronic energy + Delta-G solvation = -29857.280410 eV Core-core repulsion = 25784.899026 eV Total energy + Delta-G solvation = -4072.381384 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.33919 -40.02580 -38.24041 -36.96228 -36.36969 -34.50395 -33.12032 -32.54912 -30.49721 -29.90922 -29.06318 -28.21067 -27.67379 -25.18955 -23.50556 -23.12373 -22.34899 -21.65698 -20.87149 -19.86775 -19.38894 -18.02635 -17.26875 -16.96042 -16.41245 -16.31323 -15.87084 -15.61108 -15.20625 -14.68578 -14.48580 -14.28815 -14.09249 -14.05947 -13.96011 -13.76584 -13.46748 -13.28144 -13.17034 -12.81261 -12.63785 -12.22675 -12.13487 -11.96037 -11.73696 -11.69634 -11.62949 -11.50836 -11.16930 -10.95071 -10.66678 -10.63771 -10.45768 -10.11888 -9.93716 -9.84913 -9.72101 -9.31001 -9.01959 -8.34126 -8.29256 -7.80873 -7.23576 -5.93159 -3.92523 1.24733 1.39004 2.32289 2.46504 3.08209 3.28470 3.40024 3.43526 3.47704 3.80241 3.90859 3.93256 4.27426 4.47719 4.50474 4.89397 4.93142 4.94210 4.96711 5.07909 5.16795 5.19866 5.26538 5.42194 5.42639 5.42885 5.49878 5.52592 5.57995 5.73093 5.77205 5.80236 5.99242 6.06174 6.07863 6.29178 6.32101 6.50612 6.58641 6.70478 6.72080 6.79770 6.87011 7.18411 7.34694 7.35875 7.64703 7.74605 7.88198 8.18765 8.24913 8.55861 8.66845 9.13135 9.69800 11.18234 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002300 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.750276 B =12170.364477 C =13296.936706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.520 5.520 4 C 0.194 3.806 5 C -0.499 4.499 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.900 5.900 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.038 3.962 14 C 0.510 3.490 15 O -0.476 6.476 16 N -0.685 5.685 17 C 0.186 3.814 18 C -0.141 4.141 19 C -0.074 4.074 20 C -0.178 4.178 21 C 0.173 3.827 22 N -0.557 5.557 23 C 0.095 3.905 24 C -0.132 4.132 25 C -0.153 4.153 26 C 0.513 3.487 27 O -0.510 6.510 28 C -0.188 4.188 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.041 0.959 35 H -0.013 1.013 36 H 0.260 0.740 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.407 0.593 40 H 0.144 0.856 41 H 0.129 0.871 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.095 0.905 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 18.149 16.995 28.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.069 3.931 5 C -0.538 4.538 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.094 4.094 14 C 0.297 3.703 15 O -0.346 6.346 16 N -0.332 5.332 17 C 0.090 3.910 18 C -0.162 4.162 19 C -0.093 4.093 20 C -0.200 4.200 21 C 0.079 3.921 22 N -0.281 5.281 23 C -0.027 4.027 24 C -0.170 4.170 25 C -0.193 4.193 26 C 0.302 3.698 27 O -0.386 6.386 28 C -0.211 4.211 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.005 0.995 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.242 0.758 40 H 0.162 0.838 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -13.384 18.069 15.890 27.534 hybrid contribution 0.648 -0.733 0.033 0.979 sum -12.735 17.336 15.923 26.763 Atomic orbital electron populations 1.21811 0.96565 0.99999 1.01826 1.22017 0.94252 0.89625 1.01284 1.61841 1.26722 1.16769 1.19152 1.19812 0.80505 0.97365 0.95381 1.21065 0.93195 1.44203 0.95323 0.91977 1.24963 0.95652 0.95767 0.98287 1.69953 0.98382 1.49049 1.36638 0.86569 0.76748 0.78943 0.85177 1.20189 1.21452 1.20362 1.21885 1.02112 0.90633 0.94760 1.21104 0.75851 0.89928 0.83405 1.90752 1.43055 1.74358 1.26385 1.43716 1.73939 1.04176 1.11381 1.17552 0.93970 0.83099 0.96370 1.21434 1.00175 0.94413 1.00129 1.20841 0.97275 0.93464 0.97757 1.20654 1.00838 0.99714 0.98746 1.17361 0.92223 0.90238 0.92229 1.45749 1.35791 1.07710 1.38866 1.22258 0.98829 0.78766 1.02872 1.22629 0.96758 0.98053 0.99512 1.22346 1.02476 0.93933 1.00583 1.21090 0.79890 0.89593 0.79247 1.90643 1.67197 1.16328 1.64399 1.21220 1.01977 0.92485 1.05380 0.93780 0.92198 0.93313 0.89093 0.96208 0.94119 0.99545 0.93029 0.92336 0.89060 0.75766 0.83795 0.85272 0.86004 0.89370 0.90033 0.89565 0.88595 0.87532 0.87347 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 10.07 37.16 0.37 -1.93 16 2 C 0.06 1.09 5.51 -3.82 -0.02 1.07 16 3 N -0.52 -11.58 4.00 -237.52 -0.95 -12.53 16 4 C 0.19 5.25 4.33 -4.98 -0.02 5.23 16 5 C -0.50 -14.60 8.23 -34.44 -0.28 -14.88 16 6 H 0.06 1.80 7.31 -52.49 -0.38 1.42 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 9 Si 0.90 22.50 29.54 -169.99 -5.02 17.48 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.04 0.68 5.30 -4.97 -0.03 0.66 16 14 C 0.51 9.70 7.40 -10.98 -0.08 9.62 16 15 O -0.48 -11.23 12.57 5.56 0.07 -11.16 16 16 N -0.69 -10.47 5.33 -9.88 -0.05 -10.53 16 17 C 0.19 2.95 6.28 -83.72 -0.53 2.43 16 18 C -0.14 -2.32 8.69 -39.36 -0.34 -2.66 16 19 C -0.07 -0.99 10.03 -39.64 -0.40 -1.39 16 20 C -0.18 -2.06 9.42 -39.35 -0.37 -2.43 16 21 C 0.17 2.19 6.59 -83.72 -0.55 1.64 16 22 N -0.56 -5.51 3.14 -112.29 -0.35 -5.86 16 23 C 0.10 0.50 6.51 -3.12 -0.02 0.48 16 24 C -0.13 -0.41 7.18 -25.10 -0.18 -0.59 16 25 C -0.15 -0.81 6.86 -26.74 -0.18 -0.99 16 26 C 0.51 5.38 7.92 -10.86 -0.09 5.29 16 27 O -0.51 -7.33 14.81 5.55 0.08 -7.25 16 28 C -0.19 -2.75 9.21 -39.20 -0.36 -3.11 16 29 H 0.04 0.65 6.68 -51.93 -0.35 0.30 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 32 H 0.09 1.96 6.58 -51.93 -0.34 1.62 16 33 H 0.02 0.35 7.99 -51.93 -0.42 -0.06 16 34 H 0.04 1.22 6.64 -51.93 -0.34 0.87 16 35 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.06 0.99 7.99 -51.93 -0.41 0.57 16 38 H 0.09 1.35 6.46 -51.93 -0.34 1.01 16 39 H 0.41 4.80 8.82 -40.82 -0.36 4.44 16 40 H 0.14 2.77 6.27 -52.49 -0.33 2.44 16 41 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 42 H 0.12 1.02 6.74 -52.49 -0.35 0.67 16 43 H 0.09 0.39 7.23 -51.93 -0.38 0.01 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.10 0.09 8.14 -51.93 -0.42 -0.34 16 47 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.16 2.34 5.24 -52.49 -0.28 2.07 16 LS Contribution 394.43 15.07 5.94 5.94 Total: -1.00 -37.45 394.43 -9.94 -47.39 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.22 Total: 3.47 kcal Atomic # 6 Polarization: 3.11 SS G_CDS: -3.18 Total: -0.06 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.62 Total: -55.82 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.15 Total: -18.40 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -37.45 -9.94 -47.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081056337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.879 kcal (2) G-P(sol) polarization free energy of solvation -37.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds