Wall clock time and date at job start Wed Apr 1 2020 04:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47248 * 2 1 4 4 C 1.46888 * 111.00187 * 199.99025 * 3 2 1 5 5 C 1.50706 * 109.47349 * 66.04451 * 4 3 2 6 6 H 1.08000 * 119.99516 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00540 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99543 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00401 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47187 * 59.99785 * 9 7 5 11 11 H 1.48499 * 109.47511 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47002 * 300.00514 * 9 7 5 13 13 C 1.46904 * 110.99863 * 76.03359 * 3 2 1 14 14 C 1.50697 * 109.46876 * 200.33970 * 13 3 2 15 15 O 1.21281 * 120.00263 * 355.98354 * 14 13 3 16 16 N 1.34781 * 119.99590 * 175.98544 * 14 13 3 17 17 C 1.39922 * 119.99782 * 184.49885 * 16 14 13 18 18 C 1.38948 * 120.03769 * 324.24980 * 17 16 14 19 19 C 1.38131 * 120.07148 * 180.02562 * 18 17 16 20 20 C 1.38190 * 120.14298 * 359.74498 * 19 18 17 21 21 C 1.38897 * 120.06304 * 0.51072 * 20 19 18 22 22 N 1.39928 * 120.03449 * 179.76645 * 21 20 19 23 23 C 1.46768 * 124.34505 * 354.19073 * 22 21 20 24 24 C 1.54483 * 105.47030 * 162.98584 * 23 22 21 25 25 C 1.54629 * 101.76456 * 25.41363 * 24 23 22 26 26 C 1.34419 * 124.35254 * 174.19064 * 22 21 20 27 27 O 1.21283 * 124.93954 * 0.67118 * 26 22 21 28 28 C 1.38724 * 120.03541 * 144.27134 * 17 16 14 29 29 H 1.08994 * 109.47512 * 304.75513 * 1 2 3 30 30 H 1.09002 * 109.47078 * 64.75894 * 1 2 3 31 31 H 1.09009 * 109.46787 * 184.75734 * 1 2 3 32 32 H 1.08998 * 109.47807 * 239.99730 * 2 1 3 33 33 H 1.09002 * 109.47325 * 119.99845 * 2 1 3 34 34 H 1.09005 * 109.47297 * 186.04126 * 4 3 2 35 35 H 1.08999 * 109.47449 * 306.04862 * 4 3 2 36 36 H 0.96998 * 119.99812 * 179.97438 * 8 7 5 37 37 H 1.09001 * 109.46592 * 80.33975 * 13 3 2 38 38 H 1.09003 * 109.47481 * 320.34189 * 13 3 2 39 39 H 0.96998 * 120.00037 * 4.50111 * 16 14 13 40 40 H 1.07998 * 119.96054 * 0.02562 * 18 17 16 41 41 H 1.08001 * 119.93295 * 180.02562 * 19 18 17 42 42 H 1.07997 * 119.96857 * 180.27642 * 20 19 18 43 43 H 1.08994 * 110.24827 * 43.98257 * 23 22 21 44 44 H 1.09003 * 110.24341 * 281.98019 * 23 22 21 45 45 H 1.09004 * 110.96705 * 267.29369 * 24 23 22 46 46 H 1.08997 * 111.00024 * 143.54807 * 24 23 22 47 47 H 1.09005 * 110.48354 * 216.52465 * 25 24 23 48 48 H 1.08997 * 110.48269 * 93.88202 * 25 24 23 49 49 H 1.07999 * 120.06713 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4102 1.4518 -0.4688 5 6 3.4709 1.0500 -1.9200 6 1 2.5669 0.7724 -2.4417 7 6 4.6804 1.0368 -2.5818 8 7 5.7813 1.3744 -1.9463 9 14 4.7555 0.5395 -4.3807 10 1 3.9165 1.4638 -5.1852 11 1 6.1611 0.6081 -4.8550 12 1 4.2484 -0.8480 -4.5323 13 6 1.8831 1.9917 1.3309 14 6 1.9078 3.4930 1.2035 15 8 2.1003 4.0068 0.1219 16 7 1.7160 4.2649 2.2917 17 6 1.6450 5.6560 2.1589 18 6 2.4369 6.3065 1.2206 19 6 2.3677 7.6798 1.0893 20 6 1.5074 8.4106 1.8865 21 6 0.7170 7.7669 2.8299 22 7 -0.1503 8.5080 3.6402 23 6 -0.2141 9.9742 3.6607 24 6 -1.5598 10.3186 4.3367 25 6 -1.8098 9.0606 5.2005 26 6 -1.0319 7.9687 4.4996 27 8 -1.1788 6.7799 4.6894 28 6 0.7841 6.3873 2.9642 29 1 -0.3634 0.5858 0.8443 30 1 -0.3633 0.4382 -0.9296 31 1 -0.3633 -1.0242 0.0852 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.7825 2.4702 -0.3579 35 1 4.0258 0.7734 0.1219 36 1 6.6322 1.3647 -2.4117 37 1 2.7085 1.6671 1.9645 38 1 0.9385 1.6803 1.7770 39 1 1.6273 3.8560 3.1668 40 1 3.1072 5.7377 0.5933 41 1 2.9839 8.1831 0.3590 42 1 1.4523 9.4838 1.7784 43 1 -0.1912 10.3670 2.6443 44 1 0.6144 10.3797 4.2414 45 1 -2.3481 10.4451 3.5945 46 1 -1.4674 11.2078 4.9602 47 1 -2.8723 8.8181 5.2226 48 1 -1.4306 9.2105 6.2113 49 1 0.1681 5.8841 3.6948 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081056337.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:03 Heat of formation + Delta-G solvation = -46.089597 kcal Electronic energy + Delta-G solvation = -29858.432922 eV Core-core repulsion = 25784.899026 eV Total energy + Delta-G solvation = -4073.533896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.15816 -41.33273 -39.46918 -38.13297 -37.62598 -35.80248 -34.76826 -33.90128 -31.90075 -31.26615 -30.17234 -29.48669 -28.55716 -26.97102 -24.46800 -24.29113 -24.02038 -22.69337 -21.85502 -21.36635 -20.50210 -19.01397 -18.60452 -18.39994 -17.70715 -17.39635 -17.07869 -16.91053 -16.46443 -16.26825 -15.87925 -15.62613 -15.53470 -15.05740 -14.93447 -14.72694 -14.46291 -14.36598 -14.29024 -14.20692 -13.87707 -13.69968 -13.54512 -13.17104 -12.94650 -12.83651 -12.67871 -12.62306 -12.61893 -12.37548 -12.28413 -12.07992 -11.92714 -11.67523 -11.50971 -11.31264 -10.96830 -10.75335 -10.65979 -10.58345 -9.42664 -9.01833 -8.86569 -8.19852 -6.28172 0.16960 0.27760 1.37057 1.42272 1.46187 1.49504 1.64068 1.73031 2.04157 2.39975 2.81190 3.12479 3.28260 3.32415 3.56866 3.74261 3.97416 4.02316 4.11964 4.13387 4.14920 4.25252 4.28852 4.35189 4.40784 4.48308 4.53558 4.61547 4.64733 4.73353 4.76025 4.86426 4.96703 5.07418 5.09071 5.10338 5.17963 5.20568 5.26411 5.33824 5.37916 5.45066 5.47769 5.60208 5.64137 6.05105 6.05705 6.07176 6.35426 6.36816 6.62634 6.85779 6.95252 7.21081 7.39478 8.91650 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002300 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.750276 B =12170.364477 C =13296.936706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.054 3.946 3 N -0.537 5.537 4 C 0.215 3.785 5 C -0.518 4.518 6 H 0.059 0.941 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.969 3.031 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.262 1.262 13 C 0.039 3.961 14 C 0.509 3.491 15 O -0.531 6.531 16 N -0.669 5.669 17 C 0.166 3.834 18 C -0.171 4.171 19 C -0.074 4.074 20 C -0.161 4.161 21 C 0.173 3.827 22 N -0.560 5.560 23 C 0.083 3.917 24 C -0.118 4.118 25 C -0.145 4.145 26 C 0.495 3.505 27 O -0.560 6.560 28 C -0.197 4.197 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.002 0.998 35 H -0.036 1.036 36 H 0.263 0.737 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.423 0.577 40 H 0.105 0.895 41 H 0.149 0.851 42 H 0.164 0.836 43 H 0.101 0.899 44 H 0.100 0.900 45 H 0.091 0.909 46 H 0.129 0.871 47 H 0.114 0.886 48 H 0.128 0.872 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.456 20.348 18.070 31.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.073 4.073 3 N -0.262 5.262 4 C 0.089 3.911 5 C -0.556 4.556 6 H 0.077 0.923 7 C -0.200 4.200 8 N -0.576 5.576 9 Si 0.794 3.206 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.187 1.187 13 C -0.093 4.093 14 C 0.297 3.703 15 O -0.405 6.405 16 N -0.317 5.317 17 C 0.070 3.930 18 C -0.193 4.193 19 C -0.093 4.093 20 C -0.182 4.182 21 C 0.078 3.922 22 N -0.283 5.283 23 C -0.037 4.037 24 C -0.155 4.155 25 C -0.184 4.184 26 C 0.287 3.713 27 O -0.439 6.439 28 C -0.220 4.220 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.020 0.980 35 H -0.019 1.019 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.150 0.850 39 H 0.261 0.739 40 H 0.124 0.876 41 H 0.167 0.833 42 H 0.182 0.818 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.110 0.890 46 H 0.147 0.853 47 H 0.133 0.867 48 H 0.146 0.854 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.527 20.307 17.031 30.716 hybrid contribution 1.256 -1.299 -0.175 1.816 sum -14.271 19.008 16.855 29.138 Atomic orbital electron populations 1.21723 0.93437 1.02157 1.01730 1.22073 0.96669 0.87821 1.00765 1.61682 1.23460 1.18912 1.22101 1.19337 0.83038 0.94171 0.94579 1.21386 0.93307 1.44334 0.96564 0.92328 1.25925 0.95167 0.95560 1.03303 1.70090 0.98983 1.49907 1.38658 0.85443 0.77072 0.79163 0.78963 1.19998 1.20578 1.18671 1.22005 1.04583 0.89702 0.92964 1.21343 0.75043 0.90603 0.83358 1.90733 1.45893 1.75272 1.28618 1.43466 1.72675 1.04256 1.11263 1.17679 0.94988 0.83081 0.97207 1.21287 1.01132 0.95937 1.00925 1.21097 0.97689 0.92218 0.98274 1.20995 0.98830 1.01498 0.96899 1.17589 0.92319 0.89910 0.92431 1.46088 1.34687 1.09692 1.37827 1.22702 1.00913 0.75646 1.04459 1.22690 0.95498 0.97919 0.99411 1.22418 1.01994 0.92786 1.01225 1.22188 0.79965 0.90042 0.79094 1.90606 1.68596 1.18810 1.65880 1.21213 1.01870 0.93752 1.05168 0.92087 0.93760 0.90277 0.91906 0.94432 0.97958 1.01882 0.92810 0.91084 0.85034 0.73875 0.87646 0.83342 0.81833 0.88046 0.88159 0.88994 0.85319 0.86741 0.85436 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 10.07 71.98 0.72 -3.32 16 2 C 0.05 2.11 5.51 86.30 0.48 2.58 16 3 N -0.54 -24.74 4.00 -905.36 -3.62 -28.37 16 4 C 0.21 12.32 4.33 85.56 0.37 12.69 16 5 C -0.52 -31.57 8.23 25.60 0.21 -31.36 16 6 H 0.06 3.53 7.31 -2.91 -0.02 3.50 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -59.61 13.29 21.45 0.28 -59.32 16 9 Si 0.97 47.17 29.54 68.60 2.03 49.19 16 10 H -0.27 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.04 1.42 5.30 85.56 0.45 1.87 16 14 C 0.51 20.50 7.40 87.66 0.65 21.15 16 15 O -0.53 -27.09 12.57 -3.03 -0.04 -27.13 16 16 N -0.67 -21.64 5.33 -303.56 -1.62 -23.26 16 17 C 0.17 5.57 6.28 38.14 0.24 5.81 16 18 C -0.17 -6.08 8.69 22.41 0.19 -5.88 16 19 C -0.07 -1.97 10.03 22.23 0.22 -1.75 16 20 C -0.16 -3.42 9.42 22.42 0.21 -3.21 16 21 C 0.17 4.21 6.59 38.13 0.25 4.46 16 22 N -0.56 -9.89 3.14 -627.75 -1.97 -11.86 16 23 C 0.08 0.53 6.51 86.83 0.56 1.09 16 24 C -0.12 -0.20 7.18 31.65 0.23 0.03 16 25 C -0.14 -1.07 6.86 30.59 0.21 -0.86 16 26 C 0.50 9.74 7.92 87.90 0.70 10.43 16 27 O -0.56 -16.25 14.81 -3.04 -0.04 -16.30 16 28 C -0.20 -5.92 9.21 22.51 0.21 -5.71 16 29 H 0.06 1.64 6.68 -2.39 -0.02 1.63 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.06 2.78 6.58 -2.39 -0.02 2.76 16 33 H 0.04 1.31 7.99 -2.39 -0.02 1.30 16 34 H 0.00 0.15 6.64 -2.38 -0.02 0.13 16 35 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 36 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.07 2.44 7.99 -2.39 -0.02 2.42 16 38 H 0.13 3.69 6.46 -2.39 -0.02 3.67 16 39 H 0.42 10.38 8.82 -92.71 -0.82 9.56 16 40 H 0.11 4.55 6.27 -2.91 -0.02 4.53 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 42 H 0.16 2.06 6.74 -2.91 -0.02 2.04 16 43 H 0.10 0.42 7.23 -2.39 -0.02 0.40 16 44 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.13 -0.53 8.14 -2.39 -0.02 -0.54 16 47 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.15 4.66 5.24 -2.91 -0.02 4.65 16 Total: -1.00 -89.51 394.43 1.55 -87.96 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.16 Total: 20.72 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: 6.37 Total: 8.36 kcal Atomic # 7 Polarization: -115.88 SS G_CDS: -6.93 Total: -122.81 kcal Atomic # 8 Polarization: -43.34 SS G_CDS: -0.08 Total: -43.42 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.19 kcal Total: -89.51 1.55 -87.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081056337.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.871 kcal (2) G-P(sol) polarization free energy of solvation -89.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds