Wall clock time and date at job start Wed Apr 1 2020 04:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46508 * 109.46512 * 2 1 4 4 C 1.46503 * 119.99964 * 269.99734 * 3 2 1 5 5 C 1.50695 * 109.47123 * 270.00482 * 4 3 2 6 6 H 1.07999 * 120.00292 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99662 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99787 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 120.00194 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47251 * 89.99912 * 9 7 5 11 11 H 1.48501 * 109.47102 * 209.99894 * 9 7 5 12 12 H 1.48503 * 109.46941 * 330.00253 * 9 7 5 13 13 C 1.34774 * 119.99692 * 90.00663 * 3 2 1 14 14 O 1.21280 * 119.99670 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00421 * 359.97438 * 13 3 2 16 16 N 1.46497 * 109.47587 * 180.02562 * 15 13 3 17 17 C 1.39881 * 120.00498 * 179.97438 * 16 15 13 18 18 C 1.38884 * 120.00822 * 179.97438 * 17 16 15 19 19 C 1.38064 * 119.99750 * 179.69750 * 18 17 16 20 20 C 1.38850 * 120.00569 * 0.26077 * 19 18 17 21 21 N 1.40148 * 119.99870 * 180.02562 * 20 19 18 22 22 C 1.34772 * 119.99906 * 33.30134 * 21 20 19 23 23 O 1.21294 * 120.00161 * 5.28006 * 22 21 20 24 24 C 1.50707 * 119.99955 * 185.27817 * 22 21 20 25 25 C 1.53001 * 117.49416 * 248.62215 * 24 22 21 26 26 C 1.52998 * 117.49794 * 180.02562 * 24 22 21 27 27 C 1.38854 * 120.00885 * 0.04175 * 20 19 18 28 28 C 1.38061 * 120.00208 * 359.97438 * 27 20 19 29 29 H 1.09001 * 109.47334 * 299.99726 * 1 2 3 30 30 H 1.08999 * 109.47629 * 60.00012 * 1 2 3 31 31 H 1.09005 * 109.46593 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46861 * 240.00384 * 2 1 3 33 33 H 1.08994 * 109.47169 * 119.99901 * 2 1 3 34 34 H 1.09001 * 109.46786 * 30.00449 * 4 3 2 35 35 H 1.08996 * 109.46758 * 150.00348 * 4 3 2 36 36 H 0.97003 * 120.00231 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46964 * 59.99765 * 15 13 3 38 38 H 1.09004 * 109.46801 * 300.00656 * 15 13 3 39 39 H 0.97006 * 119.99467 * 0.02562 * 16 15 13 40 40 H 1.07996 * 120.00233 * 359.97438 * 18 17 16 41 41 H 1.08002 * 119.99813 * 180.27834 * 19 18 17 42 42 H 0.97006 * 120.00168 * 213.30557 * 21 20 19 43 43 H 1.08993 * 115.54901 * 34.32574 * 24 22 21 44 44 H 1.08994 * 117.50098 * 0.02562 * 25 24 22 45 45 H 1.09011 * 117.49400 * 145.02311 * 25 24 22 46 46 H 1.09000 * 117.50190 * 214.97505 * 26 24 22 47 47 H 1.08998 * 117.49852 * 359.97438 * 26 24 22 48 48 H 1.08000 * 120.00003 * 180.02562 * 27 20 19 49 49 H 1.08000 * 120.00416 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2688 5 6 3.6856 1.8352 -1.7038 6 1 4.3428 1.2311 -1.0958 7 6 4.1491 2.3907 -2.8775 8 7 5.3914 2.1845 -3.2569 9 14 3.0128 3.4362 -3.9287 10 1 3.1153 4.8563 -3.5068 11 1 3.4064 3.3140 -5.3554 12 1 1.6132 2.9694 -3.7595 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3083 2.2040 3.5859 17 6 2.1520 1.7647 4.9047 18 6 2.4529 2.6154 5.9604 19 6 2.2926 2.1838 7.2620 20 6 1.8357 0.8974 7.5157 21 7 1.6726 0.4595 8.8370 22 6 1.2951 1.3304 9.7937 23 8 1.0039 2.4697 9.4961 24 6 1.2347 0.8888 11.2333 25 6 -0.1467 0.7857 11.8832 26 6 0.7982 1.9239 12.2720 27 6 1.5408 0.0445 6.4604 28 6 1.7013 0.4756 5.1587 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5816 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 5.7174 2.5750 -4.0828 37 1 2.6213 0.4187 2.5301 38 1 0.9433 1.0124 2.5299 39 1 2.6258 3.1033 3.4086 40 1 2.8079 3.6161 5.7633 41 1 2.5223 2.8469 8.0830 42 1 1.8314 -0.4704 9.0629 43 1 1.9881 0.1608 11.5337 44 1 -1.0116 1.0368 11.2694 45 1 -0.3021 -0.0104 12.6114 46 1 1.2645 1.8770 13.2561 47 1 0.5552 2.9244 11.9142 48 1 1.1851 -0.9560 6.6578 49 1 1.4715 -0.1876 4.3379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088523124.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:21 Heat of formation + Delta-G solvation = -7.446927 kcal Electronic energy + Delta-G solvation = -28884.937814 eV Core-core repulsion = 24813.079590 eV Total energy + Delta-G solvation = -4071.858224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.78177 -39.65744 -38.87228 -36.80326 -35.82818 -35.41008 -33.86237 -32.75007 -31.01744 -30.47447 -29.52207 -27.98616 -26.31007 -24.60540 -23.19743 -23.06337 -22.89671 -22.17587 -21.40086 -20.23784 -18.68902 -18.04629 -17.67893 -17.34700 -16.98123 -16.25552 -15.90468 -15.65228 -15.38692 -15.22150 -14.88029 -14.63532 -14.18425 -14.07364 -13.79760 -13.59654 -13.31832 -13.28526 -13.05816 -12.91502 -12.62597 -12.57583 -12.40018 -12.20070 -12.01467 -11.86856 -11.50381 -11.28494 -11.10164 -11.05851 -11.02735 -10.83690 -10.67280 -10.55730 -10.21688 -10.10538 -9.61014 -9.33787 -9.22873 -8.94306 -8.63646 -7.86730 -7.14325 -6.13362 -4.12863 1.36237 1.43933 2.24558 2.76188 3.13041 3.23972 3.27973 3.32292 3.34741 3.39257 3.86331 3.87960 4.22706 4.33188 4.35170 4.40889 4.64212 4.78076 4.83190 4.95964 5.12491 5.13206 5.20028 5.26324 5.29697 5.34895 5.40660 5.45547 5.47340 5.49034 5.51862 5.64605 5.67221 5.87316 5.93578 6.00591 6.07141 6.23077 6.32250 6.35873 6.46460 6.60519 6.83557 6.87304 7.18409 7.20143 7.34861 7.54886 7.82393 7.90325 8.11021 8.39982 8.75563 8.89905 9.46252 10.99866 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027114 B = 0.001734 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.427032 B =16144.029936 C =16573.394960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 N -0.587 5.587 4 C 0.217 3.783 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.503 3.497 14 O -0.537 6.537 15 C 0.106 3.894 16 N -0.731 5.731 17 C 0.217 3.783 18 C -0.178 4.178 19 C -0.066 4.066 20 C 0.071 3.929 21 N -0.664 5.664 22 C 0.539 3.461 23 O -0.524 6.524 24 C -0.196 4.196 25 C -0.153 4.153 26 C -0.147 4.147 27 C -0.091 4.091 28 C -0.186 4.186 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.037 0.963 36 H 0.265 0.735 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.412 0.588 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.407 0.593 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.104 0.896 47 H 0.109 0.891 48 H 0.122 0.878 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.490 -9.512 27.003 30.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.096 3.904 5 C -0.570 4.570 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.289 3.711 14 O -0.414 6.414 15 C -0.023 4.023 16 N -0.363 5.363 17 C 0.112 3.888 18 C -0.201 4.201 19 C -0.087 4.087 20 C -0.023 4.023 21 N -0.308 5.308 22 C 0.326 3.674 23 O -0.399 6.399 24 C -0.217 4.217 25 C -0.190 4.190 26 C -0.184 4.184 27 C -0.112 4.112 28 C -0.209 4.209 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.251 0.749 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.243 0.757 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.140 0.860 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.384 -8.165 26.473 29.952 hybrid contribution -0.142 0.152 -0.751 0.780 sum -11.526 -8.013 25.722 29.303 Atomic orbital electron populations 1.22245 0.96522 1.01805 1.02359 1.21513 0.93568 0.83580 1.03421 1.47898 1.63612 1.13489 1.06845 1.19684 0.97467 0.93392 0.79835 1.21309 0.95263 1.33152 1.07270 0.90725 1.24855 0.95004 0.95754 0.97337 1.69894 1.15100 1.44842 1.23556 0.86850 0.81408 0.81600 0.79815 1.19910 1.21003 1.19077 1.20200 0.78632 0.87059 0.85230 1.90666 1.45849 1.18138 1.86776 1.21154 1.01510 0.93764 0.85838 1.44535 1.73290 1.17420 1.01069 1.17857 0.93691 0.92858 0.84346 1.20500 1.08215 1.00301 0.91095 1.20794 0.96509 0.94845 0.96536 1.17425 1.06364 0.95598 0.82951 1.43304 1.68019 1.12922 1.06569 1.19770 0.76064 0.85314 0.86254 1.90726 1.47316 1.19302 1.82596 1.22188 1.01789 1.06269 0.91492 1.22958 0.91912 1.01663 1.02499 1.22965 1.01797 0.95762 0.97871 1.20552 1.00026 0.99307 0.91273 1.20429 1.08629 0.95278 0.96573 0.92912 0.92110 0.91747 0.89375 0.91258 0.95037 0.94539 0.92500 0.89621 0.89808 0.74932 0.85722 0.85150 0.75742 0.85638 0.88140 0.87667 0.87785 0.87272 0.85994 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.10 1.48 5.93 -4.04 -0.02 1.45 16 3 N -0.59 -11.41 2.46 -175.06 -0.43 -11.84 16 4 C 0.22 5.14 4.23 -5.19 -0.02 5.12 16 5 C -0.53 -15.00 9.94 -34.44 -0.34 -15.35 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.50 9.72 7.74 -10.99 -0.09 9.64 16 14 O -0.54 -12.62 15.25 5.56 0.08 -12.54 16 15 C 0.11 1.49 3.95 -5.20 -0.02 1.47 16 16 N -0.73 -10.66 5.71 -59.76 -0.34 -11.01 16 17 C 0.22 2.89 6.66 -83.70 -0.56 2.33 16 18 C -0.18 -2.34 9.89 -39.41 -0.39 -2.73 16 19 C -0.07 -0.85 8.65 -39.42 -0.34 -1.19 16 20 C 0.07 0.79 6.28 -83.60 -0.53 0.26 16 21 N -0.66 -5.60 5.35 -9.81 -0.05 -5.65 16 22 C 0.54 5.23 7.35 -10.98 -0.08 5.15 16 23 O -0.52 -7.18 13.94 5.55 0.08 -7.11 16 24 C -0.20 -1.20 6.19 -91.77 -0.57 -1.77 16 25 C -0.15 -0.78 10.23 -26.75 -0.27 -1.06 16 26 C -0.15 -0.87 10.04 -26.76 -0.27 -1.14 16 27 C -0.09 -0.92 9.95 -39.42 -0.39 -1.31 16 28 C -0.19 -2.12 9.31 -39.40 -0.37 -2.49 16 29 H 0.05 0.58 7.22 -51.93 -0.37 0.21 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 1.33 8.07 -51.93 -0.42 0.92 16 33 H 0.07 0.81 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.71 7.13 -51.93 -0.37 0.34 16 35 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 38 H 0.08 1.00 7.00 -51.93 -0.36 0.63 16 39 H 0.41 6.57 7.45 -40.82 -0.30 6.27 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.13 1.74 6.41 -52.49 -0.34 1.40 16 42 H 0.41 2.01 8.82 -40.82 -0.36 1.65 16 43 H 0.13 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.32 8.14 -51.92 -0.42 -0.10 16 46 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.11 0.85 7.67 -51.93 -0.40 0.45 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 49 H 0.13 1.22 6.73 -52.49 -0.35 0.87 16 LS Contribution 405.26 15.07 6.11 6.11 Total: -1.00 -35.99 405.26 -9.74 -45.73 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.32 Total: 7.41 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.97 Total: -1.18 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.05 Total: -55.10 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.16 Total: -19.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.99 -9.74 -45.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523124.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.286 kcal (2) G-P(sol) polarization free energy of solvation -35.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds