Wall clock time and date at job start Wed Apr 1 2020 04:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47453 * 2 1 4 4 C 1.46496 * 120.00039 * 270.00436 * 3 2 1 5 5 C 1.50707 * 109.46882 * 269.99807 * 4 3 2 6 6 H 1.07996 * 119.99902 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99761 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00386 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99816 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47081 * 60.00084 * 9 7 5 11 11 H 1.48501 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47477 * 300.00089 * 9 7 5 13 13 C 1.34773 * 119.99909 * 89.99806 * 3 2 1 14 14 O 1.21281 * 120.00315 * 179.97438 * 13 3 2 15 15 C 1.50705 * 120.00253 * 0.02562 * 13 3 2 16 16 N 1.46500 * 109.47137 * 179.97438 * 15 13 3 17 17 C 1.39044 * 119.99715 * 180.02562 * 16 15 13 18 18 C 1.39219 * 119.92980 * 179.97438 * 17 16 15 19 19 C 1.37614 * 120.06903 * 179.74022 * 18 17 16 20 20 C 1.39796 * 119.93085 * 0.26361 * 19 18 17 21 21 C 1.47518 * 120.06960 * 179.97438 * 20 19 18 22 22 O 1.21595 * 119.99744 * 359.97438 * 21 20 19 23 23 N 1.34778 * 120.00114 * 179.97438 * 21 20 19 24 24 C 1.46500 * 119.99792 * 179.97438 * 23 21 20 25 25 C 1.53008 * 117.49511 * 223.74585 * 24 23 21 26 26 C 1.53005 * 117.49615 * 155.09087 * 24 23 21 27 27 C 1.39790 * 119.86074 * 359.97438 * 20 19 18 28 28 C 1.37609 * 119.93561 * 0.02562 * 27 20 19 29 29 H 1.09006 * 109.47066 * 299.99675 * 1 2 3 30 30 H 1.08997 * 109.47154 * 59.99807 * 1 2 3 31 31 H 1.09005 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47051 * 239.99641 * 2 1 3 33 33 H 1.09002 * 109.46879 * 120.00583 * 2 1 3 34 34 H 1.09003 * 109.47070 * 29.99421 * 4 3 2 35 35 H 1.09001 * 109.47514 * 149.99720 * 4 3 2 36 36 H 0.96994 * 120.00336 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.46760 * 60.00078 * 15 13 3 38 38 H 1.08996 * 109.46867 * 300.00186 * 15 13 3 39 39 H 0.96993 * 120.00090 * 0.02562 * 16 15 13 40 40 H 1.08002 * 119.96802 * 0.02625 * 18 17 16 41 41 H 1.07999 * 120.03520 * 180.27636 * 19 18 17 42 42 H 0.97004 * 119.99908 * 359.97438 * 23 21 20 43 43 H 1.08993 * 115.55558 * 9.41294 * 24 23 21 44 44 H 1.09002 * 117.49934 * 0.02562 * 25 24 23 45 45 H 1.08998 * 117.49474 * 145.02482 * 25 24 23 46 46 H 1.09003 * 117.49328 * 214.97985 * 26 24 23 47 47 H 1.08999 * 117.49471 * 359.97053 * 26 24 23 48 48 H 1.08007 * 120.03577 * 180.02562 * 27 20 19 49 49 H 1.07999 * 119.96903 * 180.02562 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2308 -1.0958 7 6 4.1491 2.3895 -2.8780 8 7 3.3488 3.1248 -3.6186 9 14 5.9135 2.0965 -3.4169 10 1 6.1416 0.6398 -3.5937 11 1 6.1606 2.7954 -4.7036 12 1 6.8407 2.6208 -2.3823 13 6 2.2430 2.0165 1.1672 14 8 2.6478 3.1597 1.1673 15 6 1.9923 1.3059 2.4723 16 7 2.3102 2.2033 3.5858 17 6 2.1566 1.7660 4.8967 18 6 2.4596 2.6198 5.9538 19 6 2.3036 2.1917 7.2524 20 6 1.8457 0.8961 7.5095 21 6 1.6779 0.4339 8.9003 22 8 1.9385 1.1799 9.8245 23 7 1.2358 -0.8153 9.1466 24 6 1.0698 -1.2745 10.5278 25 6 1.5674 -2.6804 10.8695 26 6 0.0651 -2.4000 10.7821 27 6 1.5471 0.0396 6.4458 28 6 1.7051 0.4735 5.1495 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5817 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6748 3.5153 -4.4444 37 1 2.6229 0.4187 2.5299 38 1 0.9445 1.0114 2.5302 39 1 2.6276 3.1025 3.4086 40 1 2.8130 3.6207 5.7546 41 1 2.5346 2.8560 8.0720 42 1 1.0276 -1.4103 8.4093 43 1 1.1688 -0.5056 11.2940 44 1 2.0187 -3.2635 10.0666 45 1 1.9933 -2.8365 11.8606 46 1 -0.4967 -2.3717 11.7158 47 1 -0.4726 -2.7985 9.9217 48 1 1.1927 -0.9618 6.6412 49 1 1.4742 -0.1877 4.3274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088523819.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:00 Heat of formation + Delta-G solvation = -16.394513 kcal Electronic energy + Delta-G solvation = -28795.828185 eV Core-core repulsion = 24723.581964 eV Total energy + Delta-G solvation = -4072.246221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43825 -39.62857 -38.75258 -37.30267 -35.74642 -35.11127 -33.24541 -32.88831 -31.08629 -30.35024 -30.10316 -27.98914 -26.25059 -23.72693 -23.20678 -23.13676 -22.83317 -22.45487 -21.49615 -20.62691 -18.80085 -18.24076 -17.61008 -16.87389 -16.55100 -16.28986 -15.87977 -15.41596 -15.22696 -15.17548 -14.96101 -14.77780 -14.33109 -14.09069 -13.80144 -13.65545 -13.60488 -13.42152 -13.02302 -12.95241 -12.68282 -12.49782 -12.15845 -12.12115 -12.04054 -11.76452 -11.70382 -11.31408 -11.12726 -11.02780 -10.93672 -10.88315 -10.63337 -10.27415 -10.22904 -10.10794 -9.77192 -9.22158 -9.17537 -9.09960 -8.51967 -7.87765 -7.58288 -6.13316 -4.18815 0.91834 1.29893 2.71713 2.79445 3.10430 3.14124 3.26002 3.31053 3.34381 3.48237 3.81905 3.85130 4.33552 4.36752 4.51274 4.53609 4.59517 4.63168 4.74749 4.79150 5.08593 5.16999 5.17704 5.21352 5.22516 5.29759 5.32106 5.38727 5.48443 5.49008 5.53377 5.62070 5.63589 5.81166 5.88901 6.04618 6.09665 6.12150 6.16772 6.31000 6.34943 6.58354 6.86824 7.12345 7.23383 7.29442 7.36916 7.61118 7.81676 8.02898 8.11626 8.19764 8.70822 8.87969 9.46580 10.94726 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.001789 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.869017 B =15645.411618 C =16082.334638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.590 5.590 4 C 0.247 3.753 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.538 6.538 15 C 0.098 3.902 16 N -0.718 5.718 17 C 0.257 3.743 18 C -0.208 4.208 19 C -0.003 4.003 20 C -0.215 4.215 21 C 0.573 3.427 22 O -0.547 6.547 23 N -0.705 5.705 24 C 0.082 3.918 25 C -0.195 4.195 26 C -0.191 4.191 27 C -0.031 4.031 28 C -0.214 4.214 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.044 0.956 36 H 0.265 0.735 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.415 0.585 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.400 0.600 43 H 0.138 0.862 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.097 0.903 48 H 0.120 0.880 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.165 -12.887 22.239 26.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.415 6.415 15 C -0.030 4.030 16 N -0.346 5.346 17 C 0.149 3.851 18 C -0.231 4.231 19 C -0.023 4.023 20 C -0.221 4.221 21 C 0.363 3.637 22 O -0.425 6.425 23 N -0.356 5.356 24 C -0.024 4.024 25 C -0.234 4.234 26 C -0.229 4.229 27 C -0.050 4.050 28 C -0.237 4.237 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.254 0.746 40 H 0.147 0.853 41 H 0.151 0.849 42 H 0.236 0.764 43 H 0.155 0.845 44 H 0.115 0.885 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.116 0.884 48 H 0.138 0.862 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.814 -11.736 22.464 26.522 hybrid contribution 0.931 -0.376 -0.996 1.415 sum -6.883 -12.112 21.467 25.591 Atomic orbital electron populations 1.22233 0.96491 1.01677 1.02465 1.21494 0.93714 0.83917 1.03015 1.48231 1.62995 1.13354 1.07539 1.19326 0.96478 0.93652 0.77776 1.21360 0.96804 1.32342 1.06433 0.92490 1.24931 0.97932 0.94815 0.96329 1.69912 1.35766 1.33165 1.14325 0.86546 0.84631 0.78292 0.77882 1.20214 1.21114 1.20169 1.20116 0.79112 0.87099 0.85182 1.90677 1.46115 1.18019 1.86716 1.21304 1.01844 0.93757 0.86093 1.44584 1.70876 1.17683 1.01456 1.18068 0.89962 0.92634 0.84475 1.20596 1.10377 1.00792 0.91316 1.20911 0.91426 0.93794 0.96169 1.19422 1.14042 0.96933 0.91673 1.18233 0.75613 0.80776 0.89038 1.90748 1.50993 1.54705 1.46059 1.45294 1.68267 1.14952 1.07039 1.21579 1.03305 0.91722 0.85775 1.23447 0.96748 0.99547 1.03641 1.23394 0.92730 1.02904 1.03898 1.20901 0.94531 0.97839 0.91771 1.20559 1.10420 0.95534 0.97208 0.93057 0.91855 0.91905 0.89524 0.91652 0.94733 0.93798 0.92560 0.89360 0.89392 0.74553 0.85267 0.84864 0.76419 0.84453 0.88459 0.87995 0.87870 0.88446 0.86192 0.85439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 10.24 37.16 0.38 -1.59 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.29 2.46 -175.06 -0.43 -11.72 16 4 C 0.25 6.08 5.16 -5.19 -0.03 6.06 16 5 C -0.53 -14.43 9.39 -34.44 -0.32 -14.76 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 9 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.50 9.33 7.74 -10.98 -0.09 9.24 16 14 O -0.54 -12.37 15.25 5.56 0.08 -12.29 16 15 C 0.10 1.28 3.93 -5.19 -0.02 1.26 16 16 N -0.72 -9.43 5.68 -59.81 -0.34 -9.77 16 17 C 0.26 3.02 6.65 -83.86 -0.56 2.46 16 18 C -0.21 -2.37 9.87 -39.45 -0.39 -2.76 16 19 C 0.00 -0.04 9.58 -39.23 -0.38 -0.41 16 20 C -0.22 -2.35 5.88 -104.95 -0.62 -2.96 16 21 C 0.57 6.62 7.76 -12.48 -0.10 6.52 16 22 O -0.55 -8.16 15.90 5.28 0.08 -8.08 16 23 N -0.71 -5.83 5.52 -54.85 -0.30 -6.13 16 24 C 0.08 0.62 6.43 -67.92 -0.44 0.19 16 25 C -0.20 -1.09 10.46 -26.69 -0.28 -1.37 16 26 C -0.19 -0.99 10.46 -26.69 -0.28 -1.27 16 27 C -0.03 -0.28 9.53 -39.23 -0.37 -0.65 16 28 C -0.21 -2.13 9.28 -39.44 -0.37 -2.50 16 29 H 0.05 0.55 7.22 -51.93 -0.38 0.18 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.28 8.07 -51.93 -0.42 0.86 16 33 H 0.07 0.71 6.44 -51.93 -0.33 0.38 16 34 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 1.01 7.18 -51.93 -0.37 0.63 16 38 H 0.09 0.95 6.99 -51.93 -0.36 0.59 16 39 H 0.42 6.01 7.44 -40.82 -0.30 5.71 16 40 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.13 1.49 7.64 -52.49 -0.40 1.09 16 42 H 0.40 2.29 6.84 -40.82 -0.28 2.01 16 43 H 0.14 1.23 7.40 -51.93 -0.38 0.84 16 44 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.12 0.68 6.39 -52.48 -0.34 0.35 16 49 H 0.13 1.05 6.70 -52.49 -0.35 0.70 16 LS Contribution 409.52 15.07 6.17 6.17 Total: -1.00 -33.96 409.52 -10.21 -44.17 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.23 Total: 5.90 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.97 Total: 0.50 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.34 Total: -52.67 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.17 Total: -20.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.96 -10.21 -44.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088523819.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.777 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds