Wall clock time and date at job start Wed Apr 1 2020 05:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46717 * 2 1 4 4 C 1.37101 * 119.99964 * 87.52501 * 3 2 1 5 5 H 1.07998 * 119.99433 * 314.26967 * 4 3 2 6 6 C 1.38947 * 120.00369 * 134.27620 * 4 3 2 7 7 N 1.31411 * 119.99931 * 169.03915 * 6 4 3 8 8 Si 1.86797 * 119.99960 * 349.03969 * 6 4 3 9 9 H 1.48501 * 109.47378 * 95.74587 * 8 6 4 10 10 H 1.48500 * 109.47167 * 215.74456 * 8 6 4 11 11 H 1.48504 * 109.47190 * 335.74804 * 8 6 4 12 12 C 1.34771 * 120.00146 * 267.51227 * 3 2 1 13 13 O 1.21292 * 120.00094 * 184.92212 * 12 3 2 14 14 C 1.50708 * 119.99938 * 4.92641 * 12 3 2 15 15 H 1.08994 * 109.46822 * 35.93630 * 14 12 3 16 16 C 1.53004 * 109.46844 * 275.94321 * 14 12 3 17 17 C 1.53002 * 109.47131 * 175.90071 * 16 14 12 18 18 C 1.52993 * 109.47190 * 295.90168 * 16 14 12 19 19 S 1.81394 * 109.47350 * 155.94383 * 14 12 3 20 20 O 1.42099 * 108.57782 * 187.12972 * 19 14 12 21 21 O 1.42102 * 108.57920 * 56.10454 * 19 14 12 22 22 C 1.81403 * 101.92198 * 301.61829 * 19 14 12 23 23 C 1.53000 * 109.47094 * 176.63781 * 22 19 14 24 24 C 1.53002 * 109.46785 * 179.97438 * 23 22 19 25 25 C 1.53001 * 109.47227 * 300.00322 * 24 23 22 26 26 C 1.52999 * 109.46973 * 60.00066 * 25 24 23 27 27 C 1.52994 * 109.47205 * 299.99559 * 26 25 24 28 28 H 1.08997 * 109.46888 * 185.63302 * 1 2 3 29 29 H 1.09003 * 109.47018 * 305.62806 * 1 2 3 30 30 H 1.08991 * 109.47257 * 65.63073 * 1 2 3 31 31 H 1.09003 * 109.46981 * 239.99912 * 2 1 3 32 32 H 1.09000 * 109.46895 * 120.00025 * 2 1 3 33 33 H 0.97005 * 119.99987 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46977 * 55.89987 * 16 14 12 35 35 H 1.08991 * 109.47066 * 67.96811 * 17 16 14 36 36 H 1.08995 * 109.46878 * 187.97054 * 17 16 14 37 37 H 1.09006 * 109.46561 * 307.96849 * 17 16 14 38 38 H 1.08999 * 109.47592 * 53.35167 * 18 16 14 39 39 H 1.09001 * 109.47457 * 173.35177 * 18 16 14 40 40 H 1.09007 * 109.47283 * 293.35458 * 18 16 14 41 41 H 1.09001 * 109.47045 * 56.63911 * 22 19 14 42 42 H 1.09001 * 109.47068 * 60.00144 * 23 22 19 43 43 H 1.08993 * 109.47261 * 300.00113 * 23 22 19 44 44 H 1.09001 * 109.47060 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47114 * 60.00277 * 24 23 22 46 46 H 1.09001 * 109.46878 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47036 * 300.00002 * 25 24 23 48 48 H 1.08990 * 109.46914 * 60.00328 * 26 25 24 49 49 H 1.09007 * 109.46506 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47432 * 300.00447 * 27 26 25 51 51 H 1.09002 * 109.47087 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1984 2.0446 1.1862 5 1 1.4367 2.0005 1.9506 6 6 3.3607 2.7738 1.4050 7 7 3.4457 3.5800 2.4392 8 14 4.8025 2.6081 0.2289 9 1 4.7485 3.6990 -0.7773 10 1 6.0747 2.6989 0.9895 11 1 4.7305 1.2948 -0.4606 12 6 2.2906 1.9997 -1.1660 13 8 2.7787 3.1101 -1.1640 14 6 1.9886 1.3117 -2.4724 15 1 1.0733 0.7284 -2.3727 16 6 3.1478 0.3829 -2.8395 17 6 2.7975 -0.3917 -4.1116 18 6 4.4103 1.2132 -3.0794 19 16 1.7743 2.5553 -3.7755 20 8 1.3291 1.9018 -4.9561 21 8 2.9428 3.3623 -3.8277 22 6 0.4105 3.5550 -3.1188 23 6 0.1375 4.7279 -4.0625 24 6 -1.0133 5.5706 -3.5089 25 6 -2.2698 4.7053 -3.3939 26 6 -1.9967 3.5324 -2.4501 27 6 -0.8460 2.6896 -3.0038 28 1 -0.3633 -1.0227 0.1009 29 1 -0.3633 0.5987 0.8353 30 1 -0.3633 0.4240 -0.9360 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2571 4.0894 2.5918 34 1 3.3237 -0.3185 -2.0238 35 1 2.7605 0.2954 -4.9568 36 1 3.5565 -1.1522 -4.2945 37 1 1.8257 -0.8702 -3.9895 38 1 4.5933 1.8538 -2.2167 39 1 5.2610 0.5473 -3.2244 40 1 4.2761 1.8301 -3.9680 41 1 0.6809 3.9362 -2.1341 42 1 -0.1329 4.3466 -5.0472 43 1 1.0327 5.3440 -4.1447 44 1 -1.2075 6.4065 -4.1810 45 1 -0.7433 5.9519 -2.5241 46 1 -3.0897 5.3058 -2.9999 47 1 -2.5398 4.3240 -4.3787 48 1 -1.7268 3.9137 -1.4654 49 1 -2.8921 2.9162 -2.3679 50 1 -1.1160 2.3083 -3.9886 51 1 -0.6512 1.8543 -2.3312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103002610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:55 Heat of formation + Delta-G solvation = -110.952774 kcal Electronic energy + Delta-G solvation = -32792.808757 eV Core-core repulsion = 28819.613383 eV Total energy + Delta-G solvation = -3973.195375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -39.73113 -38.35619 -36.71411 -36.19835 -35.34347 -35.20139 -32.37759 -31.17172 -30.87622 -29.84288 -28.52209 -27.02961 -24.59990 -23.06722 -22.78316 -22.73119 -20.73362 -19.95313 -19.84967 -18.42524 -17.56147 -17.10256 -16.11201 -15.90986 -15.70386 -15.27833 -14.86055 -14.58416 -14.25531 -14.18092 -14.10896 -13.63482 -13.47841 -13.42470 -13.25592 -12.79974 -12.70565 -12.61828 -12.49026 -12.36671 -12.27337 -11.98038 -11.69480 -11.63007 -11.44506 -11.29671 -11.27160 -11.18686 -11.17635 -11.08760 -10.92144 -10.69140 -10.62192 -10.52150 -10.27586 -10.20662 -10.03657 -9.74209 -9.47638 -8.83235 -8.50005 -7.76910 -6.25439 -4.16170 0.29540 2.92909 3.09987 3.43914 3.65493 3.75146 3.89612 4.03522 4.36018 4.50157 4.51781 4.65578 4.74528 4.81965 4.91751 4.96647 5.10859 5.13806 5.18420 5.22745 5.29493 5.39473 5.41767 5.44428 5.44975 5.51822 5.62381 5.73069 5.73531 5.78379 5.83464 5.88332 5.95142 5.99398 6.05445 6.09042 6.10455 6.11640 6.12826 6.14125 6.18326 6.30400 6.38392 6.39854 6.57429 6.68618 7.71841 7.77930 8.57072 8.64693 9.27836 9.55253 10.76077 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.006392 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.660703 B = 4379.583258 C = 5015.849420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.440 5.440 4 C -0.350 4.350 5 H 0.098 0.902 6 C 0.084 3.916 7 N -0.868 5.868 8 Si 0.923 3.077 9 H -0.245 1.245 10 H -0.320 1.320 11 H -0.276 1.276 12 C 0.466 3.534 13 O -0.530 6.530 14 C -0.598 4.598 15 H 0.143 0.857 16 C -0.069 4.069 17 C -0.171 4.171 18 C -0.191 4.191 19 S 2.439 3.561 20 O -0.948 6.948 21 O -0.912 6.912 22 C -0.569 4.569 23 C -0.102 4.102 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.112 4.112 27 C -0.107 4.107 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.274 0.726 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.153 0.847 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.193 -5.296 -11.494 15.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.034 4.034 3 N -0.160 5.160 4 C -0.476 4.476 5 H 0.116 0.884 6 C -0.125 4.125 7 N -0.502 5.502 8 Si 0.757 3.243 9 H -0.171 1.171 10 H -0.251 1.251 11 H -0.202 1.202 12 C 0.254 3.746 13 O -0.414 6.414 14 C -0.709 4.709 15 H 0.161 0.839 16 C -0.089 4.089 17 C -0.228 4.228 18 C -0.248 4.248 19 S 2.621 3.379 20 O -0.945 6.945 21 O -0.909 6.909 22 C -0.679 4.679 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.158 4.158 26 C -0.150 4.150 27 C -0.145 4.145 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.171 0.829 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.098 0.902 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.393 -4.560 -12.128 15.438 hybrid contribution 0.273 -0.423 0.536 0.735 sum -8.121 -4.983 -11.592 15.005 Atomic orbital electron populations 1.22206 0.96776 1.01391 1.02196 1.21762 0.94152 0.85287 1.02226 1.43523 1.57564 1.10091 1.04822 1.18856 1.04846 1.31188 0.92683 0.88424 1.25486 0.98478 0.93127 0.95393 1.69692 1.28459 1.23270 1.28762 0.86164 0.77796 0.80302 0.79999 1.17084 1.25110 1.20219 1.19153 0.85271 0.86503 0.83654 1.90591 1.45486 1.20014 1.85358 1.30686 1.08257 1.17178 1.14780 0.83943 1.20844 0.92148 0.96227 0.99661 1.22250 1.02263 1.01271 0.97058 1.22593 0.96619 1.00492 1.05072 1.07680 0.77041 0.76936 0.76210 1.93513 1.83054 1.75512 1.42375 1.93577 1.44475 1.67155 1.85657 1.30170 1.14314 1.10381 1.12985 1.21311 1.00664 0.95033 0.97096 1.21456 0.94212 0.97448 1.01866 1.21558 0.97463 0.96939 0.99837 1.21443 0.97245 0.96688 0.99642 1.21438 0.93341 0.97177 1.02560 0.92375 0.91530 0.93318 0.91727 0.90208 0.91626 0.88754 0.90893 0.91361 0.91606 0.89948 0.91779 0.90810 0.82913 0.90890 0.90156 0.91474 0.91114 0.91781 0.91926 0.91071 0.91511 0.90200 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.12 37.16 0.38 -1.94 16 2 C 0.09 1.50 5.69 -4.04 -0.02 1.47 16 3 N -0.44 -9.66 2.16 -114.81 -0.25 -9.91 16 4 C -0.35 -9.26 9.75 -14.93 -0.15 -9.40 16 5 H 0.10 2.70 8.06 -52.49 -0.42 2.28 16 6 C 0.08 2.41 5.08 -17.47 -0.09 2.32 16 7 N -0.87 -25.81 13.96 55.50 0.77 -25.04 16 8 Si 0.92 24.50 22.11 -169.99 -3.76 20.74 16 9 H -0.24 -6.91 6.32 56.52 0.36 -6.55 16 10 H -0.32 -8.49 7.11 56.52 0.40 -8.09 16 11 H -0.28 -6.78 5.80 56.52 0.33 -6.45 16 12 C 0.47 10.17 3.67 -10.98 -0.04 10.13 16 13 O -0.53 -13.56 8.76 -12.22 -0.11 -13.66 16 14 C -0.60 -10.45 1.12 -27.88 -0.03 -10.48 16 15 H 0.14 1.98 4.89 -51.93 -0.25 1.73 16 16 C -0.07 -1.14 2.39 -90.62 -0.22 -1.36 16 17 C -0.17 -2.31 8.52 37.16 0.32 -1.99 16 18 C -0.19 -3.59 7.81 37.15 0.29 -3.30 16 19 S 2.44 43.57 2.85 -107.50 -0.31 43.27 16 20 O -0.95 -16.52 15.40 -57.83 -0.89 -17.41 16 21 O -0.91 -19.61 14.11 -65.11 -0.92 -20.53 16 22 C -0.57 -8.88 2.22 -26.73 -0.06 -8.94 16 23 C -0.10 -1.42 5.21 -26.73 -0.14 -1.55 16 24 C -0.11 -1.31 5.92 -26.73 -0.16 -1.46 16 25 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 26 C -0.11 -1.28 5.92 -26.73 -0.16 -1.44 16 27 C -0.11 -1.37 4.97 -26.73 -0.13 -1.50 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.61 5.60 -51.93 -0.29 0.32 16 31 H 0.06 0.94 4.90 -51.93 -0.25 0.68 16 32 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 33 H 0.27 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.09 1.48 6.52 -51.93 -0.34 1.14 16 35 H 0.07 1.07 5.98 -51.93 -0.31 0.76 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 38 H 0.08 1.83 3.06 -51.93 -0.16 1.67 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.39 5.67 -51.92 -0.29 1.10 16 41 H 0.15 2.70 6.88 -51.92 -0.36 2.34 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.08 0.92 7.98 -51.93 -0.41 0.51 16 51 H 0.07 0.88 5.33 -51.93 -0.28 0.61 16 LS Contribution 369.97 15.07 5.58 5.58 Total: -1.00 -33.65 369.97 -8.79 -42.44 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -8.54 Total: 5.39 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: -0.37 Total: -30.86 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.53 Total: -34.94 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.92 Total: -51.60 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -3.76 Total: 20.74 kcal Atomic # 16 Polarization: 43.57 SS G_CDS: -0.31 Total: 43.27 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.65 -8.79 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103002610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.516 kcal (2) G-P(sol) polarization free energy of solvation -33.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds