Wall clock time and date at job start Wed Apr 1 2020 05:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46717 * 2 1 4 4 C 1.37101 * 119.99964 * 87.52501 * 3 2 1 5 5 H 1.07998 * 119.99433 * 314.26967 * 4 3 2 6 6 C 1.38947 * 120.00369 * 134.27620 * 4 3 2 7 7 N 1.31411 * 119.99931 * 169.03915 * 6 4 3 8 8 Si 1.86797 * 119.99960 * 349.03969 * 6 4 3 9 9 H 1.48501 * 109.47378 * 95.74587 * 8 6 4 10 10 H 1.48500 * 109.47167 * 215.74456 * 8 6 4 11 11 H 1.48504 * 109.47190 * 335.74804 * 8 6 4 12 12 C 1.34771 * 120.00146 * 267.51227 * 3 2 1 13 13 O 1.21292 * 120.00094 * 184.92212 * 12 3 2 14 14 C 1.50708 * 119.99938 * 4.92641 * 12 3 2 15 15 H 1.08994 * 109.46822 * 35.93630 * 14 12 3 16 16 C 1.53004 * 109.46844 * 275.94321 * 14 12 3 17 17 C 1.53002 * 109.47131 * 175.90071 * 16 14 12 18 18 C 1.52993 * 109.47190 * 295.90168 * 16 14 12 19 19 S 1.81394 * 109.47350 * 155.94383 * 14 12 3 20 20 O 1.42099 * 108.57782 * 187.12972 * 19 14 12 21 21 O 1.42102 * 108.57920 * 56.10454 * 19 14 12 22 22 C 1.81403 * 101.92198 * 301.61829 * 19 14 12 23 23 C 1.53000 * 109.47094 * 176.63781 * 22 19 14 24 24 C 1.53002 * 109.46785 * 179.97438 * 23 22 19 25 25 C 1.53001 * 109.47227 * 300.00322 * 24 23 22 26 26 C 1.52999 * 109.46973 * 60.00066 * 25 24 23 27 27 C 1.52994 * 109.47205 * 299.99559 * 26 25 24 28 28 H 1.08997 * 109.46888 * 185.63302 * 1 2 3 29 29 H 1.09003 * 109.47018 * 305.62806 * 1 2 3 30 30 H 1.08991 * 109.47257 * 65.63073 * 1 2 3 31 31 H 1.09003 * 109.46981 * 239.99912 * 2 1 3 32 32 H 1.09000 * 109.46895 * 120.00025 * 2 1 3 33 33 H 0.97005 * 119.99987 * 180.02562 * 7 6 4 34 34 H 1.09005 * 109.46977 * 55.89987 * 16 14 12 35 35 H 1.08991 * 109.47066 * 67.96811 * 17 16 14 36 36 H 1.08995 * 109.46878 * 187.97054 * 17 16 14 37 37 H 1.09006 * 109.46561 * 307.96849 * 17 16 14 38 38 H 1.08999 * 109.47592 * 53.35167 * 18 16 14 39 39 H 1.09001 * 109.47457 * 173.35177 * 18 16 14 40 40 H 1.09007 * 109.47283 * 293.35458 * 18 16 14 41 41 H 1.09001 * 109.47045 * 56.63911 * 22 19 14 42 42 H 1.09001 * 109.47068 * 60.00144 * 23 22 19 43 43 H 1.08993 * 109.47261 * 300.00113 * 23 22 19 44 44 H 1.09001 * 109.47060 * 179.97438 * 24 23 22 45 45 H 1.09001 * 109.47114 * 60.00277 * 24 23 22 46 46 H 1.09001 * 109.46878 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47036 * 300.00002 * 25 24 23 48 48 H 1.08990 * 109.46914 * 60.00328 * 26 25 24 49 49 H 1.09007 * 109.46506 * 179.97438 * 26 25 24 50 50 H 1.09001 * 109.47432 * 300.00447 * 27 26 25 51 51 H 1.09002 * 109.47087 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1984 2.0446 1.1862 5 1 1.4367 2.0005 1.9506 6 6 3.3607 2.7738 1.4050 7 7 3.4457 3.5800 2.4392 8 14 4.8025 2.6081 0.2289 9 1 4.7485 3.6990 -0.7773 10 1 6.0747 2.6989 0.9895 11 1 4.7305 1.2948 -0.4606 12 6 2.2906 1.9997 -1.1660 13 8 2.7787 3.1101 -1.1640 14 6 1.9886 1.3117 -2.4724 15 1 1.0733 0.7284 -2.3727 16 6 3.1478 0.3829 -2.8395 17 6 2.7975 -0.3917 -4.1116 18 6 4.4103 1.2132 -3.0794 19 16 1.7743 2.5553 -3.7755 20 8 1.3291 1.9018 -4.9561 21 8 2.9428 3.3623 -3.8277 22 6 0.4105 3.5550 -3.1188 23 6 0.1375 4.7279 -4.0625 24 6 -1.0133 5.5706 -3.5089 25 6 -2.2698 4.7053 -3.3939 26 6 -1.9967 3.5324 -2.4501 27 6 -0.8460 2.6896 -3.0038 28 1 -0.3633 -1.0227 0.1009 29 1 -0.3633 0.5987 0.8353 30 1 -0.3633 0.4240 -0.9360 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 4.2571 4.0894 2.5918 34 1 3.3237 -0.3185 -2.0238 35 1 2.7605 0.2954 -4.9568 36 1 3.5565 -1.1522 -4.2945 37 1 1.8257 -0.8702 -3.9895 38 1 4.5933 1.8538 -2.2167 39 1 5.2610 0.5473 -3.2244 40 1 4.2761 1.8301 -3.9680 41 1 0.6809 3.9362 -2.1341 42 1 -0.1329 4.3466 -5.0472 43 1 1.0327 5.3440 -4.1447 44 1 -1.2075 6.4065 -4.1810 45 1 -0.7433 5.9519 -2.5241 46 1 -3.0897 5.3058 -2.9999 47 1 -2.5398 4.3240 -4.3787 48 1 -1.7268 3.9137 -1.4654 49 1 -2.8921 2.9162 -2.3679 50 1 -1.1160 2.3083 -3.9886 51 1 -0.6512 1.8543 -2.3312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103002610.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:53 Heat of formation + Delta-G solvation = -133.769898 kcal Electronic energy + Delta-G solvation = -32793.798182 eV Core-core repulsion = 28819.613383 eV Total energy + Delta-G solvation = -3974.184799 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.43208 -39.36849 -38.12866 -37.64412 -36.92629 -36.76469 -34.39130 -32.23173 -31.86797 -31.30851 -29.98313 -28.27432 -26.47687 -24.19300 -24.05115 -23.77148 -22.03702 -21.68905 -20.86533 -19.92155 -19.27079 -18.44433 -17.70846 -17.57140 -17.27440 -16.63495 -16.11813 -16.03672 -15.78705 -15.25413 -15.24501 -15.17176 -15.07734 -14.80828 -14.43657 -14.27592 -14.07929 -14.04226 -13.91885 -13.66144 -13.47131 -13.24116 -13.08686 -12.98615 -12.86188 -12.60632 -12.55864 -12.51523 -12.48477 -12.26153 -12.18771 -12.13790 -12.04255 -11.88010 -11.70543 -11.48104 -11.35950 -11.18630 -10.86657 -10.70032 -10.47092 -9.64091 -8.43846 -6.30379 -1.07969 1.12202 1.27830 1.55234 1.58949 1.85288 2.32985 2.43800 2.54932 3.00395 3.06459 3.33631 3.40602 3.41688 3.65784 3.68197 3.87089 3.97792 4.08763 4.13840 4.16447 4.21967 4.27687 4.36789 4.39956 4.47210 4.49595 4.51992 4.61091 4.67965 4.78016 4.81455 4.86802 4.89249 4.95191 4.96118 5.03627 5.09055 5.15128 5.18828 5.22080 5.24387 5.26276 5.31487 5.45812 5.48985 5.65410 5.80902 6.61324 6.76408 7.22175 7.67826 8.60625 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010768 B = 0.006392 C = 0.005581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2599.660703 B = 4379.583258 C = 5015.849420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.079 3.921 3 N -0.454 5.454 4 C -0.332 4.332 5 H 0.079 0.921 6 C 0.040 3.960 7 N -0.912 5.912 8 Si 0.964 3.036 9 H -0.283 1.283 10 H -0.328 1.328 11 H -0.247 1.247 12 C 0.472 3.528 13 O -0.570 6.570 14 C -0.594 4.594 15 H 0.185 0.815 16 C -0.073 4.073 17 C -0.169 4.169 18 C -0.202 4.202 19 S 2.432 3.568 20 O -0.942 6.942 21 O -0.959 6.959 22 C -0.559 4.559 23 C -0.111 4.111 24 C -0.112 4.112 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.112 4.112 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.271 0.729 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.043 0.957 39 H 0.090 0.910 40 H 0.065 0.935 41 H 0.124 0.876 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.049 0.951 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.944 -8.607 -13.878 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.043 4.043 3 N -0.174 5.174 4 C -0.460 4.460 5 H 0.097 0.903 6 C -0.164 4.164 7 N -0.549 5.549 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.261 1.261 11 H -0.171 1.171 12 C 0.261 3.739 13 O -0.457 6.457 14 C -0.705 4.705 15 H 0.202 0.798 16 C -0.092 4.092 17 C -0.226 4.226 18 C -0.259 4.259 19 S 2.618 3.382 20 O -0.939 6.939 21 O -0.956 6.956 22 C -0.671 4.671 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.156 4.156 26 C -0.152 4.152 27 C -0.150 4.150 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.142 0.858 42 H 0.110 0.890 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.068 0.932 49 H 0.112 0.888 50 H 0.120 0.880 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.138 -7.939 -14.531 19.956 hybrid contribution 1.023 0.630 1.190 1.691 sum -10.115 -7.309 -13.341 18.269 Atomic orbital electron populations 1.22188 0.94230 1.03588 1.02157 1.22111 0.96280 0.82069 1.03852 1.43717 1.58036 1.12225 1.03392 1.18748 1.03243 1.30353 0.93613 0.90293 1.26012 1.00392 0.93831 0.96141 1.69764 1.28979 1.25524 1.30677 0.85519 0.76225 0.80435 0.77958 1.21159 1.26057 1.17148 1.19746 0.83085 0.85998 0.85090 1.90569 1.46703 1.22183 1.86234 1.30658 1.10851 1.17551 1.11413 0.79787 1.21004 0.90270 0.95913 1.02018 1.22274 1.04789 1.01178 0.94339 1.22664 0.99379 1.00863 1.02967 1.07734 0.76998 0.76932 0.76536 1.93511 1.82846 1.75374 1.42137 1.93531 1.47297 1.68351 1.86454 1.30070 1.14584 1.11018 1.11464 1.21470 1.01015 0.94690 0.97825 1.21505 0.94211 0.98153 1.01224 1.21594 0.96873 0.96507 1.00671 1.21492 0.97664 0.97315 0.98705 1.21634 0.92115 0.97086 1.04185 0.88544 0.93798 0.91708 0.88535 0.90271 0.91964 0.87307 0.92361 0.88773 0.88758 0.93797 0.89067 0.91665 0.85796 0.88955 0.91827 0.89386 0.92981 0.90201 0.90112 0.93176 0.88797 0.88013 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 10.12 71.98 0.73 -3.13 16 2 C 0.08 2.37 5.69 86.38 0.49 2.86 16 3 N -0.45 -19.43 2.16 -635.53 -1.37 -20.80 16 4 C -0.33 -17.89 9.75 84.04 0.82 -17.07 16 5 H 0.08 4.49 8.06 -2.91 -0.02 4.47 16 6 C 0.04 2.37 5.08 84.93 0.43 2.81 16 7 N -0.91 -56.86 13.96 21.66 0.30 -56.56 16 8 Si 0.96 52.62 22.11 68.60 1.52 54.14 16 9 H -0.28 -17.05 6.32 99.48 0.63 -16.42 16 10 H -0.33 -17.94 7.11 99.48 0.71 -17.23 16 11 H -0.25 -11.98 5.80 99.48 0.58 -11.40 16 12 C 0.47 20.28 3.67 87.66 0.32 20.60 16 13 O -0.57 -30.13 8.76 13.92 0.12 -30.01 16 14 C -0.59 -19.23 1.12 29.85 0.03 -19.20 16 15 H 0.18 4.23 4.89 -2.39 -0.01 4.22 16 16 C -0.07 -2.15 2.39 -10.79 -0.03 -2.18 16 17 C -0.17 -3.74 8.52 71.98 0.61 -3.13 16 18 C -0.20 -7.35 7.81 71.98 0.56 -6.79 16 19 S 2.43 84.30 2.85 -56.49 -0.16 84.14 16 20 O -0.94 -30.36 15.40 -127.37 -1.96 -32.32 16 21 O -0.96 -42.56 14.11 -120.41 -1.70 -44.26 16 22 C -0.56 -17.04 2.22 30.59 0.07 -16.97 16 23 C -0.11 -3.00 5.21 30.59 0.16 -2.84 16 24 C -0.11 -2.50 5.92 30.60 0.18 -2.32 16 25 C -0.12 -2.12 5.92 30.59 0.18 -1.94 16 26 C -0.11 -2.26 5.92 30.59 0.18 -2.08 16 27 C -0.11 -2.52 4.97 30.59 0.15 -2.37 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.30 5.60 -2.39 -0.01 1.28 16 31 H 0.10 2.29 4.90 -2.39 -0.01 2.28 16 32 H 0.08 2.41 8.06 -2.39 -0.02 2.39 16 33 H 0.27 16.25 8.31 -92.70 -0.77 15.48 16 34 H 0.11 2.91 6.52 -2.38 -0.02 2.89 16 35 H 0.06 1.49 5.98 -2.39 -0.01 1.48 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.09 1.57 8.13 -2.38 -0.02 1.55 16 38 H 0.04 1.94 3.06 -2.39 -0.01 1.93 16 39 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 2.47 5.67 -2.38 -0.01 2.45 16 41 H 0.12 4.55 6.88 -2.39 -0.02 4.54 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 50 H 0.10 1.88 7.98 -2.39 -0.02 1.86 16 51 H 0.08 1.65 5.33 -2.39 -0.01 1.64 16 Total: -1.00 -79.55 369.97 2.36 -77.19 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.71 Total: 22.22 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 4.90 Total: -53.73 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -1.07 Total: -77.36 kcal Atomic # 8 Polarization: -103.05 SS G_CDS: -3.54 Total: -106.59 kcal Atomic # 14 Polarization: 52.62 SS G_CDS: 1.52 Total: 54.14 kcal Atomic # 16 Polarization: 84.30 SS G_CDS: -0.16 Total: 84.14 kcal Total: -79.55 2.36 -77.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103002610.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.579 kcal (2) G-P(sol) polarization free energy of solvation -79.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds