Wall clock time and date at job start Wed Apr 1 2020 05:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47053 * 2 1 4 4 C 1.37095 * 120.00289 * 263.79498 * 3 2 1 5 5 H 1.08000 * 120.00194 * 142.34856 * 4 3 2 6 6 C 1.38953 * 119.99766 * 322.34734 * 4 3 2 7 7 N 1.31408 * 120.00088 * 339.02240 * 6 4 3 8 8 Si 1.86803 * 119.99972 * 159.02139 * 6 4 3 9 9 H 1.48496 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47199 * 120.00045 * 8 6 4 11 11 H 1.48506 * 109.46998 * 239.99894 * 8 6 4 12 12 C 1.34778 * 119.99749 * 83.79053 * 3 2 1 13 13 O 1.21289 * 119.99734 * 180.02562 * 12 3 2 14 14 C 1.50700 * 120.00080 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47082 * 179.97438 * 14 12 3 16 16 N 1.46497 * 109.46915 * 180.02562 * 15 14 12 17 17 C 1.34778 * 119.99913 * 180.02562 * 16 15 14 18 18 O 1.21590 * 119.99775 * 5.79651 * 17 16 15 19 19 N 1.34777 * 120.00049 * 185.80234 * 17 16 15 20 20 C 1.47225 * 121.33865 * 175.22762 * 19 17 16 21 21 C 1.52788 * 107.90181 * 115.70862 * 20 19 17 22 22 C 1.50607 * 110.85090 * 47.47980 * 21 20 19 23 23 C 1.38979 * 117.61567 * 160.55802 * 22 21 20 24 24 C 1.37912 * 120.58202 * 179.55706 * 23 22 21 25 25 C 1.38260 * 119.82436 * 359.55859 * 24 23 22 26 26 C 1.37957 * 119.71885 * 0.45418 * 25 24 23 27 27 C 1.37663 * 122.86172 * 339.97109 * 22 21 20 28 28 C 1.46687 * 121.33682 * 355.19678 * 19 17 16 29 29 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47603 * 299.99559 * 1 2 3 31 31 H 1.09002 * 109.47429 * 60.00213 * 1 2 3 32 32 H 1.09003 * 109.46914 * 240.00253 * 2 1 3 33 33 H 1.08991 * 109.47259 * 120.00526 * 2 1 3 34 34 H 0.97007 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46886 * 59.99381 * 14 12 3 36 36 H 1.08999 * 109.46879 * 299.99857 * 14 12 3 37 37 H 1.08996 * 109.47389 * 59.99516 * 15 14 12 38 38 H 1.08998 * 109.46465 * 299.99643 * 15 14 12 39 39 H 0.97001 * 120.00208 * 359.97438 * 16 15 14 40 40 H 1.08995 * 109.77732 * 235.30960 * 20 19 17 41 41 H 1.09006 * 109.77781 * 356.11304 * 20 19 17 42 42 H 1.09001 * 109.20836 * 167.82942 * 21 20 19 43 43 H 1.09008 * 109.20208 * 287.17376 * 21 20 19 44 44 H 1.08001 * 119.70755 * 359.29010 * 23 22 21 45 45 H 1.07995 * 120.08625 * 179.82886 * 24 23 22 46 46 H 1.08006 * 120.14488 * 180.48170 * 25 24 23 47 47 H 1.08002 * 119.74928 * 179.81956 * 26 25 24 48 48 H 1.09004 * 109.43151 * 104.31493 * 28 19 17 49 49 H 1.08994 * 109.40291 * 344.42335 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3678 1.9848 -1.1803 5 1 2.1460 3.0298 -1.3389 6 6 3.0075 1.2519 -2.1726 7 7 3.6410 0.1426 -1.8649 8 14 2.9667 1.8438 -3.9439 9 1 2.1936 3.1090 -4.0254 10 1 4.3537 2.0792 -4.4191 11 1 2.3199 0.8133 -4.7954 12 6 2.1239 2.0586 1.1604 13 8 2.5277 3.2023 1.1603 14 6 1.7402 1.3950 2.4579 15 6 1.9535 2.3741 3.6141 16 7 1.5810 1.7288 4.8754 17 6 1.6867 2.4062 6.0358 18 8 1.9896 3.5837 6.0270 19 7 1.4567 1.7783 7.2060 20 6 1.6641 2.4598 8.4944 21 6 0.3084 2.5721 9.1900 22 6 -0.4211 1.2548 9.1582 23 6 -1.4476 1.0646 10.0756 24 6 -2.1621 -0.1149 10.0945 25 6 -1.8626 -1.1148 9.1879 26 6 -0.8440 -0.9289 8.2763 27 6 -0.1198 0.2556 8.2605 28 6 0.9891 0.3886 7.2470 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.0879 -0.3689 -2.5576 35 1 2.3599 0.5116 2.6113 36 1 0.6914 1.1008 2.4192 37 1 1.3341 3.2578 3.4608 38 1 3.0024 2.6678 3.6525 39 1 1.2577 0.8143 4.8754 40 1 2.3488 1.8794 9.1127 41 1 2.0743 3.4552 8.3233 42 1 0.4610 2.8723 10.2266 43 1 -0.2932 3.3266 8.6831 44 1 -1.6849 1.8456 10.7828 45 1 -2.9563 -0.2552 10.8127 46 1 -2.4240 -2.0375 9.1930 47 1 -0.6077 -1.7109 7.5698 48 1 1.8161 -0.2643 7.5265 49 1 0.6176 0.1023 6.2631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118319800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:28 Heat of formation + Delta-G solvation = -29.486803 kcal Electronic energy + Delta-G solvation = -29787.872626 eV Core-core repulsion = 25715.058681 eV Total energy + Delta-G solvation = -4072.813945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.80947 -39.42065 -38.60091 -36.33154 -35.27011 -34.72814 -33.28793 -32.12960 -31.67956 -30.38582 -29.48481 -29.28623 -26.14054 -25.27586 -24.11956 -22.98898 -22.52920 -22.07846 -21.20984 -19.72797 -18.73900 -17.89839 -17.16042 -16.80548 -16.29498 -16.15395 -15.63730 -15.38259 -15.25676 -14.93787 -14.90416 -14.42138 -14.14880 -14.03533 -13.88110 -13.61419 -13.37448 -13.15249 -12.94300 -12.79144 -12.52198 -12.49387 -12.37339 -11.89054 -11.83019 -11.65511 -11.43994 -11.32747 -11.05934 -11.02998 -10.99718 -10.92750 -10.34203 -10.31515 -10.12879 -10.10757 -9.21213 -9.01584 -8.94671 -8.91143 -8.62277 -8.42680 -7.47411 -6.34451 -3.97629 0.98952 1.02968 2.51891 3.15394 3.21803 3.26520 3.33182 3.37759 3.82328 3.90039 4.17391 4.27212 4.36754 4.54476 4.66523 4.80856 4.81902 4.90766 4.96997 5.01871 5.06070 5.20361 5.22407 5.31064 5.32684 5.54799 5.56887 5.59185 5.65122 5.68117 5.77641 5.81273 6.01901 6.06214 6.15992 6.16310 6.20807 6.26535 6.27764 6.38632 6.40089 6.48771 6.63173 6.65872 6.83932 6.91194 7.19352 7.58812 7.92554 8.26727 8.50116 8.61491 9.18779 9.39664 10.00333 10.70637 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002078 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.153149 B =13472.135177 C =14435.392959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.101 3.899 3 N -0.441 5.441 4 C -0.307 4.307 5 H 0.091 0.909 6 C 0.036 3.964 7 N -0.870 5.870 8 Si 0.917 3.083 9 H -0.267 1.267 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.463 3.537 13 O -0.578 6.578 14 C -0.147 4.147 15 C 0.155 3.845 16 N -0.744 5.744 17 C 0.711 3.289 18 O -0.583 6.583 19 N -0.634 5.634 20 C 0.131 3.869 21 C -0.100 4.100 22 C -0.065 4.065 23 C -0.121 4.121 24 C -0.119 4.119 25 C -0.122 4.122 26 C -0.112 4.112 27 C -0.096 4.096 28 C 0.153 3.847 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.267 0.733 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.392 0.608 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.125 0.875 48 H 0.081 0.919 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.240 -7.612 22.982 26.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.160 5.160 4 C -0.435 4.435 5 H 0.109 0.891 6 C -0.168 4.168 7 N -0.508 5.508 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.251 3.749 13 O -0.461 6.461 14 C -0.188 4.188 15 C 0.032 3.968 16 N -0.401 5.401 17 C 0.413 3.587 18 O -0.460 6.460 19 N -0.372 5.372 20 C 0.008 3.992 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.139 4.139 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.131 4.131 27 C -0.097 4.097 28 C 0.030 3.970 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.227 0.773 40 H 0.089 0.911 41 H 0.119 0.881 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.143 0.857 48 H 0.099 0.901 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.655 -6.287 22.790 25.537 hybrid contribution -0.341 -0.699 -0.826 1.134 sum -9.996 -6.985 21.965 25.123 Atomic orbital electron populations 1.22235 0.98234 1.00340 1.01584 1.21484 0.91578 0.85592 1.03663 1.43486 1.55754 1.11733 1.05040 1.19461 1.36585 0.97090 0.90357 0.89148 1.25380 0.94191 0.96596 1.00621 1.69956 1.30387 1.16860 1.33628 0.86027 0.78151 0.79025 0.82476 1.19155 1.20769 1.20639 1.20021 0.82535 0.87926 0.84462 1.90559 1.50268 1.18649 1.86633 1.21813 1.02744 0.99628 0.94597 1.20958 1.01760 0.95073 0.79055 1.45392 1.71331 1.17273 1.06069 1.15720 0.78282 0.84728 0.80000 1.90938 1.55342 1.13888 1.85811 1.47187 1.71524 1.13268 1.05250 1.21430 0.95825 0.99539 0.82456 1.20893 0.96621 0.94557 1.01688 1.19524 0.96518 0.95373 0.95073 1.21196 0.95950 0.97774 0.99003 1.21093 0.99695 0.93830 0.99046 1.21067 0.97843 0.99304 0.95838 1.21054 0.95994 0.96730 0.99312 1.19786 0.97898 0.94526 0.97495 1.20386 0.94787 0.83608 0.98235 0.93097 0.93863 0.92387 0.87595 0.93400 0.92330 0.89667 0.89925 0.90838 0.90818 0.77317 0.91067 0.88108 0.89606 0.89921 0.86079 0.86077 0.85898 0.85713 0.90062 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.81 10.13 37.16 0.38 -2.44 16 2 C 0.10 2.09 5.41 -4.04 -0.02 2.07 16 3 N -0.44 -10.92 2.53 -114.81 -0.29 -11.21 16 4 C -0.31 -8.45 8.90 -14.93 -0.13 -8.59 16 5 H 0.09 2.63 7.77 -52.49 -0.41 2.22 16 6 C 0.04 0.95 4.90 -17.47 -0.09 0.87 16 7 N -0.87 -23.22 11.54 55.50 0.64 -22.58 16 8 Si 0.92 20.52 29.60 -169.99 -5.03 15.49 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.46 11.11 7.58 -10.98 -0.08 11.02 16 13 O -0.58 -16.18 15.85 5.55 0.09 -16.09 16 14 C -0.15 -2.55 4.42 -27.88 -0.12 -2.68 16 15 C 0.16 2.72 4.97 -4.04 -0.02 2.70 16 16 N -0.74 -10.36 5.46 -65.23 -0.36 -10.72 16 17 C 0.71 10.85 8.32 -86.92 -0.72 10.13 16 18 O -0.58 -11.37 15.86 5.29 0.08 -11.29 16 19 N -0.63 -7.24 2.93 -180.12 -0.53 -7.76 16 20 C 0.13 1.27 6.43 -3.75 -0.02 1.25 16 21 C -0.10 -0.83 5.86 -28.04 -0.16 -0.99 16 22 C -0.06 -0.57 5.76 -104.60 -0.60 -1.17 16 23 C -0.12 -0.94 9.59 -39.43 -0.38 -1.32 16 24 C -0.12 -0.85 10.04 -39.69 -0.40 -1.25 16 25 C -0.12 -0.87 10.05 -39.68 -0.40 -1.27 16 26 C -0.11 -0.85 9.62 -39.46 -0.38 -1.23 16 27 C -0.10 -0.84 5.82 -104.55 -0.61 -1.44 16 28 C 0.15 1.30 6.08 -5.04 -0.03 1.27 16 29 H 0.05 0.72 8.14 -51.92 -0.42 0.29 16 30 H 0.04 0.68 6.48 -51.93 -0.34 0.34 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.11 2.46 5.61 -51.93 -0.29 2.16 16 33 H 0.05 0.88 6.70 -51.93 -0.35 0.54 16 34 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.08 1.34 7.42 -51.93 -0.39 0.95 16 36 H 0.08 1.24 6.43 -51.93 -0.33 0.91 16 37 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 38 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 39 H 0.39 4.15 6.12 -40.82 -0.25 3.90 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 1.12 7.09 -51.93 -0.37 0.76 16 42 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 43 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.12 0.73 8.05 -52.49 -0.42 0.31 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 47 H 0.12 0.69 8.05 -52.49 -0.42 0.27 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 0.65 5.95 -51.93 -0.31 0.34 16 LS Contribution 394.12 15.07 5.94 5.94 Total: -1.00 -34.80 394.12 -10.49 -45.29 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -7.23 Total: 6.00 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: -3.80 Total: 6.93 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.53 Total: -52.27 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: 0.17 Total: -27.38 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.80 -10.49 -45.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118319800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.804 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds