Wall clock time and date at job start Wed Apr 1 2020 05:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47053 * 2 1 4 4 C 1.37095 * 120.00289 * 263.79498 * 3 2 1 5 5 H 1.08000 * 120.00194 * 142.34856 * 4 3 2 6 6 C 1.38953 * 119.99766 * 322.34734 * 4 3 2 7 7 N 1.31408 * 120.00088 * 339.02240 * 6 4 3 8 8 Si 1.86803 * 119.99972 * 159.02139 * 6 4 3 9 9 H 1.48496 * 109.47213 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47199 * 120.00045 * 8 6 4 11 11 H 1.48506 * 109.46998 * 239.99894 * 8 6 4 12 12 C 1.34778 * 119.99749 * 83.79053 * 3 2 1 13 13 O 1.21289 * 119.99734 * 180.02562 * 12 3 2 14 14 C 1.50700 * 120.00080 * 0.02562 * 12 3 2 15 15 C 1.53003 * 109.47082 * 179.97438 * 14 12 3 16 16 N 1.46497 * 109.46915 * 180.02562 * 15 14 12 17 17 C 1.34778 * 119.99913 * 180.02562 * 16 15 14 18 18 O 1.21590 * 119.99775 * 5.79651 * 17 16 15 19 19 N 1.34777 * 120.00049 * 185.80234 * 17 16 15 20 20 C 1.47225 * 121.33865 * 175.22762 * 19 17 16 21 21 C 1.52788 * 107.90181 * 115.70862 * 20 19 17 22 22 C 1.50607 * 110.85090 * 47.47980 * 21 20 19 23 23 C 1.38979 * 117.61567 * 160.55802 * 22 21 20 24 24 C 1.37912 * 120.58202 * 179.55706 * 23 22 21 25 25 C 1.38260 * 119.82436 * 359.55859 * 24 23 22 26 26 C 1.37957 * 119.71885 * 0.45418 * 25 24 23 27 27 C 1.37663 * 122.86172 * 339.97109 * 22 21 20 28 28 C 1.46687 * 121.33682 * 355.19678 * 19 17 16 29 29 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47603 * 299.99559 * 1 2 3 31 31 H 1.09002 * 109.47429 * 60.00213 * 1 2 3 32 32 H 1.09003 * 109.46914 * 240.00253 * 2 1 3 33 33 H 1.08991 * 109.47259 * 120.00526 * 2 1 3 34 34 H 0.97007 * 120.00080 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.46886 * 59.99381 * 14 12 3 36 36 H 1.08999 * 109.46879 * 299.99857 * 14 12 3 37 37 H 1.08996 * 109.47389 * 59.99516 * 15 14 12 38 38 H 1.08998 * 109.46465 * 299.99643 * 15 14 12 39 39 H 0.97001 * 120.00208 * 359.97438 * 16 15 14 40 40 H 1.08995 * 109.77732 * 235.30960 * 20 19 17 41 41 H 1.09006 * 109.77781 * 356.11304 * 20 19 17 42 42 H 1.09001 * 109.20836 * 167.82942 * 21 20 19 43 43 H 1.09008 * 109.20208 * 287.17376 * 21 20 19 44 44 H 1.08001 * 119.70755 * 359.29010 * 23 22 21 45 45 H 1.07995 * 120.08625 * 179.82886 * 24 23 22 46 46 H 1.08006 * 120.14488 * 180.48170 * 25 24 23 47 47 H 1.08002 * 119.74928 * 179.81956 * 26 25 24 48 48 H 1.09004 * 109.43151 * 104.31493 * 28 19 17 49 49 H 1.08994 * 109.40291 * 344.42335 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3678 1.9848 -1.1803 5 1 2.1460 3.0298 -1.3389 6 6 3.0075 1.2519 -2.1726 7 7 3.6410 0.1426 -1.8649 8 14 2.9667 1.8438 -3.9439 9 1 2.1936 3.1090 -4.0254 10 1 4.3537 2.0792 -4.4191 11 1 2.3199 0.8133 -4.7954 12 6 2.1239 2.0586 1.1604 13 8 2.5277 3.2023 1.1603 14 6 1.7402 1.3950 2.4579 15 6 1.9535 2.3741 3.6141 16 7 1.5810 1.7288 4.8754 17 6 1.6867 2.4062 6.0358 18 8 1.9896 3.5837 6.0270 19 7 1.4567 1.7783 7.2060 20 6 1.6641 2.4598 8.4944 21 6 0.3084 2.5721 9.1900 22 6 -0.4211 1.2548 9.1582 23 6 -1.4476 1.0646 10.0756 24 6 -2.1621 -0.1149 10.0945 25 6 -1.8626 -1.1148 9.1879 26 6 -0.8440 -0.9289 8.2763 27 6 -0.1198 0.2556 8.2605 28 6 0.9891 0.3886 7.2470 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.0879 -0.3689 -2.5576 35 1 2.3599 0.5116 2.6113 36 1 0.6914 1.1008 2.4192 37 1 1.3341 3.2578 3.4608 38 1 3.0024 2.6678 3.6525 39 1 1.2577 0.8143 4.8754 40 1 2.3488 1.8794 9.1127 41 1 2.0743 3.4552 8.3233 42 1 0.4610 2.8723 10.2266 43 1 -0.2932 3.3266 8.6831 44 1 -1.6849 1.8456 10.7828 45 1 -2.9563 -0.2552 10.8127 46 1 -2.4240 -2.0375 9.1930 47 1 -0.6077 -1.7109 7.5698 48 1 1.8161 -0.2643 7.5265 49 1 0.6176 0.1023 6.2631 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000118319800.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:26 Heat of formation + Delta-G solvation = -51.084405 kcal Electronic energy + Delta-G solvation = -29788.809168 eV Core-core repulsion = 25715.058681 eV Total energy + Delta-G solvation = -4073.750488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.71160 -40.57541 -40.11581 -37.26889 -36.94097 -36.23189 -34.16757 -33.89492 -32.43867 -31.60342 -31.09681 -30.10248 -27.37424 -26.63431 -25.14007 -24.24140 -23.64666 -23.07832 -22.16603 -20.98283 -20.12288 -18.93918 -18.73033 -18.08596 -17.60244 -17.24542 -16.90832 -16.66482 -16.37219 -16.08376 -15.85378 -15.73267 -15.46687 -15.16824 -14.95538 -14.67420 -14.47760 -14.33261 -14.20466 -13.97813 -13.61250 -13.56669 -13.38096 -13.20022 -13.08435 -12.94419 -12.75710 -12.59104 -12.53134 -12.43162 -12.17812 -12.03666 -11.95629 -11.73938 -11.66439 -11.41287 -10.87648 -10.37552 -10.33835 -9.76379 -9.53321 -9.46903 -9.42105 -8.34783 -6.05717 0.43432 0.48985 1.36003 1.41318 1.46970 1.55679 2.03449 2.05758 2.30387 2.75142 2.86108 3.01466 3.21626 3.64476 3.75017 3.83164 3.95471 4.06832 4.10856 4.14734 4.22464 4.30694 4.31055 4.33769 4.50646 4.58205 4.59911 4.67330 4.67412 4.76292 4.80371 4.82737 4.92300 4.96960 4.99240 5.10128 5.12863 5.20808 5.35481 5.37996 5.38854 5.48408 5.59237 5.60233 5.62861 5.67043 5.90039 6.13744 6.23604 6.55435 6.87930 7.20113 7.46676 7.48919 8.08722 8.68715 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.002078 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.153149 B =13472.135177 C =14435.392959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.098 3.902 3 N -0.452 5.452 4 C -0.341 4.341 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.887 5.887 8 Si 0.978 3.022 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.261 1.261 12 C 0.446 3.554 13 O -0.633 6.633 14 C -0.125 4.125 15 C 0.171 3.829 16 N -0.728 5.728 17 C 0.705 3.295 18 O -0.634 6.634 19 N -0.627 5.627 20 C 0.126 3.874 21 C -0.092 4.092 22 C -0.084 4.084 23 C -0.131 4.131 24 C -0.125 4.125 25 C -0.128 4.128 26 C -0.117 4.117 27 C -0.110 4.110 28 C 0.150 3.850 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.273 0.727 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.412 0.588 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.064 0.936 44 H 0.133 0.867 45 H 0.140 0.860 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.101 0.899 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 -10.845 24.091 28.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.025 4.025 3 N -0.171 5.171 4 C -0.470 4.470 5 H 0.077 0.923 6 C -0.198 4.198 7 N -0.524 5.524 8 Si 0.802 3.198 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.186 1.186 12 C 0.235 3.765 13 O -0.520 6.520 14 C -0.165 4.165 15 C 0.046 3.954 16 N -0.386 5.386 17 C 0.407 3.593 18 O -0.515 6.515 19 N -0.364 5.364 20 C 0.003 3.997 21 C -0.130 4.130 22 C -0.085 4.085 23 C -0.149 4.149 24 C -0.143 4.143 25 C -0.146 4.146 26 C -0.135 4.135 27 C -0.111 4.111 28 C 0.027 3.973 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.251 0.749 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.083 0.917 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.163 0.837 48 H 0.119 0.881 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -11.226 -9.626 23.935 28.135 hybrid contribution 0.136 0.265 -1.091 1.131 sum -11.090 -9.361 22.844 27.064 Atomic orbital electron populations 1.22133 0.95156 1.02658 1.01393 1.21650 0.94074 0.83138 1.03661 1.43789 1.55589 1.13180 1.04559 1.19354 1.38590 0.96440 0.92589 0.92346 1.26062 0.93290 0.96660 1.03797 1.70003 1.30154 1.17338 1.34918 0.85126 0.78021 0.78680 0.78002 1.19838 1.20603 1.18597 1.21065 0.81579 0.87479 0.86338 1.90521 1.52597 1.21219 1.87704 1.21635 1.05137 0.99328 0.90371 1.20497 0.99440 0.94671 0.80812 1.44993 1.71136 1.17932 1.04542 1.15926 0.78100 0.84245 0.81065 1.90904 1.57613 1.16346 1.86677 1.47225 1.70300 1.14493 1.04369 1.21580 0.97199 0.98812 0.82085 1.20814 0.95315 0.94356 1.02504 1.19655 0.97343 0.95499 0.95963 1.21404 0.95796 0.98563 0.99097 1.21405 0.99932 0.93563 0.99398 1.21401 0.97748 1.00049 0.95417 1.21308 0.95731 0.96727 0.99757 1.19882 0.98356 0.95210 0.97647 1.20648 0.95631 0.81754 0.99218 0.89415 0.92283 0.94397 0.90133 0.90763 0.91687 0.86919 0.86492 0.93630 0.93788 0.74923 0.88892 0.90228 0.87417 0.91729 0.84885 0.84246 0.83905 0.83692 0.88094 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 10.13 71.98 0.73 -4.12 16 2 C 0.10 3.89 5.41 86.38 0.47 4.36 16 3 N -0.45 -22.63 2.53 -635.55 -1.61 -24.24 16 4 C -0.34 -19.39 8.90 84.04 0.75 -18.64 16 5 H 0.06 3.61 7.77 -2.91 -0.02 3.59 16 6 C 0.00 0.25 4.90 84.93 0.42 0.67 16 7 N -0.89 -47.13 11.54 21.66 0.25 -46.88 16 8 Si 0.98 42.39 29.60 68.60 2.03 44.42 16 9 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 12 C 0.45 21.74 7.58 87.66 0.66 22.40 16 13 O -0.63 -37.28 15.85 -3.06 -0.05 -37.33 16 14 C -0.12 -4.13 4.42 29.85 0.13 -4.00 16 15 C 0.17 6.07 4.97 86.38 0.43 6.49 16 16 N -0.73 -19.48 5.46 -478.54 -2.61 -22.10 16 17 C 0.71 21.56 8.32 179.05 1.49 23.05 16 18 O -0.63 -25.90 15.86 -4.00 -0.06 -25.96 16 19 N -0.63 -13.72 2.93 -842.05 -2.47 -16.19 16 20 C 0.13 2.40 6.43 86.17 0.55 2.95 16 21 C -0.09 -1.47 5.86 29.75 0.17 -1.29 16 22 C -0.08 -1.36 5.76 -19.85 -0.11 -1.47 16 23 C -0.13 -1.79 9.59 22.37 0.21 -1.57 16 24 C -0.13 -1.48 10.04 22.20 0.22 -1.25 16 25 C -0.13 -1.44 10.05 22.21 0.22 -1.21 16 26 C -0.12 -1.40 9.62 22.35 0.22 -1.18 16 27 C -0.11 -1.65 5.82 -19.82 -0.12 -1.77 16 28 C 0.15 2.16 6.08 85.63 0.52 2.68 16 29 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.06 1.64 6.48 -2.39 -0.02 1.63 16 31 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 3.66 5.61 -2.39 -0.01 3.64 16 33 H 0.07 2.51 6.70 -2.39 -0.02 2.50 16 34 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 35 H 0.11 3.18 7.42 -2.39 -0.02 3.16 16 36 H 0.12 3.11 6.43 -2.39 -0.02 3.10 16 37 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 39 H 0.41 7.52 6.12 -92.71 -0.57 6.95 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.86 7.09 -2.38 -0.02 1.85 16 42 H 0.11 1.18 8.11 -2.39 -0.02 1.17 16 43 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.13 1.37 8.05 -2.91 -0.02 1.35 16 45 H 0.14 1.05 8.06 -2.91 -0.02 1.02 16 46 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 47 H 0.15 1.05 8.05 -2.91 -0.02 1.03 16 48 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.10 1.15 5.95 -2.39 -0.01 1.14 16 Total: -1.00 -81.02 394.12 2.85 -78.17 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.40 Total: 24.04 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.97 Total: 26.07 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -6.44 Total: -109.41 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: -0.11 Total: -63.29 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -81.02 2.85 -78.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118319800.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.086 kcal (2) G-P(sol) polarization free energy of solvation -81.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds