Wall clock time and date at job start Wed Apr 1 2020 04:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47043 * 2 1 4 4 C 1.46505 * 119.99947 * 90.00238 * 3 2 1 5 5 C 1.50694 * 109.47252 * 89.99932 * 4 3 2 6 6 H 1.08002 * 119.99965 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99850 * 179.72567 * 5 4 3 8 8 N 1.31511 * 119.99946 * 0.27182 * 7 5 4 9 9 Si 1.86807 * 119.99716 * 180.27424 * 7 5 4 10 10 H 1.48501 * 109.46890 * 59.99916 * 9 7 5 11 11 H 1.48497 * 109.46760 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47085 * 300.00024 * 9 7 5 13 13 C 1.34777 * 120.00012 * 270.00114 * 3 2 1 14 14 O 1.21284 * 119.99858 * 180.02562 * 13 3 2 15 15 C 1.50698 * 119.99872 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47090 * 187.32971 * 15 13 3 17 17 C 1.46636 * 110.99912 * 56.32107 * 16 15 13 18 18 C 1.50630 * 110.47838 * 70.81591 * 17 16 15 19 19 C 1.38732 * 118.41649 * 197.41183 * 18 17 16 20 20 C 1.38020 * 120.37013 * 180.40535 * 19 18 17 21 21 C 1.38260 * 119.86995 * 0.02562 * 20 19 18 22 22 C 1.38034 * 119.83012 * 359.91085 * 21 20 19 23 23 C 1.37830 * 121.84609 * 17.66268 * 18 17 16 24 24 C 1.50714 * 121.66485 * 359.45668 * 23 18 17 25 25 C 1.47164 * 110.99760 * 179.29595 * 16 15 13 26 26 H 1.09008 * 109.62433 * 188.13471 * 25 16 15 27 27 C 1.50700 * 109.62712 * 67.75358 * 25 16 15 28 28 N 1.34778 * 119.99903 * 180.02562 * 27 25 16 29 29 O 1.21284 * 120.00158 * 359.97438 * 27 25 16 30 30 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47157 * 299.99945 * 1 2 3 32 32 H 1.08990 * 109.47540 * 59.99724 * 1 2 3 33 33 H 1.08999 * 109.47157 * 240.00055 * 2 1 3 34 34 H 1.09003 * 109.47148 * 119.99817 * 2 1 3 35 35 H 1.09005 * 109.46970 * 329.99358 * 4 3 2 36 36 H 1.09000 * 109.46968 * 210.00264 * 4 3 2 37 37 H 0.97005 * 119.99803 * 180.02562 * 8 7 5 38 38 H 1.08995 * 109.47615 * 307.33688 * 15 13 3 39 39 H 1.09005 * 109.46555 * 67.33458 * 15 13 3 40 40 H 1.08996 * 109.30380 * 191.13322 * 17 16 15 41 41 H 1.09002 * 109.29951 * 310.51484 * 17 16 15 42 42 H 1.07998 * 119.81564 * 0.39114 * 19 18 17 43 43 H 1.07998 * 120.06566 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.08507 * 179.88796 * 21 20 19 45 45 H 1.07993 * 119.82627 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.39088 * 256.75158 * 24 23 18 47 47 H 1.09005 * 109.30519 * 136.99959 * 24 23 18 48 48 H 0.97002 * 120.00057 * 359.97438 * 28 27 25 49 49 H 0.97003 * 119.99771 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8351 1.7038 6 1 4.3426 1.2303 1.0962 7 6 4.1508 2.3948 2.8749 8 7 3.3508 3.1308 3.6150 9 14 5.9174 2.1075 3.4102 10 1 6.8406 2.6304 2.3712 11 1 6.1666 2.8125 4.6932 12 1 6.1492 0.6520 3.5913 13 6 2.2429 2.0166 -1.1672 14 8 2.6476 3.1599 -1.1672 15 6 1.9923 1.3060 -2.4723 16 7 2.4737 2.1379 -3.5831 17 6 3.8912 2.4724 -3.4133 18 6 4.7499 1.2540 -3.6309 19 6 6.0561 1.2750 -3.1641 20 6 6.8808 0.1838 -3.3491 21 6 6.4038 -0.9367 -4.0036 22 6 5.1040 -0.9596 -4.4675 23 6 4.2737 0.1352 -4.2799 24 6 2.8605 0.0631 -4.7989 25 6 2.2601 1.4671 -4.8754 26 1 2.7514 2.0328 -5.6672 27 6 0.7831 1.3757 -5.1604 28 7 0.3508 0.7947 -6.2971 29 8 -0.0166 1.8241 -4.3664 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5816 1.6878 2.0284 36 1 2.0955 3.1411 1.1385 37 1 3.6782 3.5249 4.4387 38 1 2.5225 0.3537 -2.4752 39 1 0.9234 1.1271 -2.5890 40 1 4.1687 3.2421 -4.1334 41 1 4.0535 2.8518 -2.4044 42 1 6.4298 2.1500 -2.6532 43 1 7.8970 0.2056 -2.9840 44 1 7.0467 -1.7918 -4.1518 45 1 4.7314 -1.8351 -4.9784 46 1 2.2597 -0.5513 -4.1284 47 1 2.8641 -0.3836 -5.7932 48 1 0.9904 0.4357 -6.9319 49 1 -0.5999 0.7355 -6.4803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120383653.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:14 Heat of formation + Delta-G solvation = -26.718165 kcal Electronic energy + Delta-G solvation = -32085.096321 eV Core-core repulsion = 28012.402433 eV Total energy + Delta-G solvation = -4072.693888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.13510 -39.16410 -38.82190 -36.63239 -35.16670 -34.00866 -32.76694 -32.58343 -31.28640 -30.02824 -29.57862 -28.38405 -26.46832 -24.74635 -23.86725 -22.91507 -22.27730 -22.17445 -21.00632 -19.55172 -18.19731 -17.63456 -16.98255 -16.63382 -16.41531 -16.22240 -15.75025 -15.34113 -15.16514 -14.87930 -14.60656 -14.47470 -14.18564 -14.09118 -13.73318 -13.43685 -13.22750 -13.12933 -12.84760 -12.76837 -12.54060 -12.30239 -11.92286 -11.73613 -11.66708 -11.43518 -11.39018 -11.17592 -11.11578 -10.95973 -10.84583 -10.59959 -10.45295 -10.06410 -9.90473 -9.83116 -9.58183 -8.80692 -8.73380 -8.52130 -8.38370 -8.16162 -7.54573 -5.98927 -4.03415 1.30806 1.37303 2.50866 3.17185 3.33744 3.38177 3.40107 3.54812 3.71652 3.73768 4.23729 4.44902 4.48982 4.62239 4.76430 4.80896 4.90771 5.00915 5.05285 5.18817 5.21293 5.34341 5.35547 5.45700 5.48418 5.56353 5.63965 5.68695 5.78064 5.81682 5.94029 5.99356 6.01034 6.13190 6.23814 6.31812 6.40801 6.51679 6.57235 6.58589 6.61376 6.89862 6.99365 7.05070 7.18176 7.23169 7.53961 7.64812 7.98156 8.14619 8.30244 8.53265 8.96642 9.21669 9.61376 11.09029 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.004452 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.883676 B = 6287.496294 C = 8018.138028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.108 3.892 3 N -0.597 5.597 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.512 3.488 14 O -0.527 6.527 15 C 0.026 3.974 16 N -0.482 5.482 17 C 0.070 3.930 18 C -0.101 4.101 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.089 4.089 24 C -0.106 4.106 25 C 0.063 3.937 26 H 0.114 0.886 27 C 0.522 3.478 28 N -0.859 5.859 29 O -0.513 6.513 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.031 0.969 36 H 0.044 0.956 37 H 0.263 0.737 38 H 0.058 0.942 39 H 0.113 0.887 40 H 0.089 0.911 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.399 0.601 49 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.461 -11.294 -21.824 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.299 3.701 14 O -0.405 6.405 15 C -0.104 4.104 16 N -0.203 5.203 17 C -0.058 4.058 18 C -0.103 4.103 19 C -0.125 4.125 20 C -0.135 4.135 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.089 4.089 24 C -0.145 4.145 25 C -0.049 4.049 26 H 0.131 0.869 27 C 0.306 3.694 28 N -0.424 5.424 29 O -0.387 6.387 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.131 0.869 40 H 0.107 0.893 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.102 0.898 48 H 0.227 0.773 49 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -0.934 -9.740 -20.947 23.120 hybrid contribution 1.455 -1.354 -0.046 1.988 sum 0.521 -11.094 -20.993 23.750 Atomic orbital electron populations 1.22225 0.96715 1.01292 1.02607 1.21394 0.93600 0.84372 1.02314 1.48220 1.63906 1.13093 1.07664 1.19246 0.96100 0.93702 0.78097 1.21384 0.96888 1.31618 1.06319 0.92666 1.24915 0.97659 0.94997 0.96420 1.69927 1.35603 1.33355 1.14465 0.86604 0.85081 0.78166 0.77823 1.20231 1.21207 1.20346 1.20012 0.78452 0.86944 0.84720 1.90577 1.45377 1.17774 1.86736 1.22322 1.02997 0.94874 0.90243 1.62074 1.17322 1.41791 0.99117 1.21721 0.83701 0.93408 1.06926 1.20588 0.95690 0.96783 0.97219 1.21172 0.93315 0.99019 0.98946 1.21126 0.99873 0.93643 0.98846 1.21028 0.95788 0.98258 0.99257 1.20959 0.94000 0.97575 1.00944 1.19335 0.95081 0.94434 1.00079 1.21032 0.93690 0.97528 1.02250 1.21731 0.92734 0.94888 0.95595 0.86866 1.20425 0.90844 0.76933 0.81213 1.43869 1.11839 1.63511 1.23192 1.90777 1.56348 1.45292 1.46237 0.92345 0.91981 0.92777 0.92215 0.90052 0.95136 0.93827 0.92728 0.92458 0.86936 0.89322 0.85060 0.85628 0.86105 0.86277 0.86385 0.89813 0.89802 0.77320 0.76772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 2 C 0.11 1.87 5.96 -4.04 -0.02 1.85 16 3 N -0.60 -13.23 2.46 -175.05 -0.43 -13.66 16 4 C 0.25 6.65 5.16 -5.19 -0.03 6.63 16 5 C -0.52 -14.99 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 11.29 7.14 -10.99 -0.08 11.21 16 14 O -0.53 -13.56 13.55 5.55 0.08 -13.48 16 15 C 0.03 0.45 3.21 -4.98 -0.02 0.43 16 16 N -0.48 -7.64 4.35 -231.04 -1.00 -8.64 16 17 C 0.07 1.10 5.12 -5.15 -0.03 1.08 16 18 C -0.10 -1.43 5.32 -104.62 -0.56 -1.98 16 19 C -0.11 -1.49 9.65 -39.48 -0.38 -1.87 16 20 C -0.12 -1.43 10.05 -39.65 -0.40 -1.83 16 21 C -0.13 -1.37 10.05 -39.65 -0.40 -1.77 16 22 C -0.12 -1.24 9.66 -39.49 -0.38 -1.62 16 23 C -0.09 -1.05 5.06 -104.60 -0.53 -1.58 16 24 C -0.11 -1.00 4.33 -27.93 -0.12 -1.12 16 25 C 0.06 0.71 2.60 -68.78 -0.18 0.53 16 26 H 0.11 1.08 8.05 -51.92 -0.42 0.66 16 27 C 0.52 5.99 7.15 -10.98 -0.08 5.91 16 28 N -0.86 -5.49 8.79 31.22 0.27 -5.21 16 29 O -0.51 -8.45 15.31 5.55 0.09 -8.36 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.05 0.83 7.45 -51.93 -0.39 0.44 16 33 H 0.06 0.90 6.24 -51.93 -0.32 0.58 16 34 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 0.91 4.38 -51.93 -0.23 0.69 16 39 H 0.11 1.95 5.38 -51.93 -0.28 1.67 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.13 2.62 5.09 -51.93 -0.26 2.36 16 42 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.08 0.84 6.81 -51.93 -0.35 0.48 16 47 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 48 H 0.40 1.27 8.55 -40.82 -0.35 0.92 16 49 H 0.40 2.22 8.93 -40.82 -0.36 1.85 16 LS Contribution 389.26 15.07 5.87 5.87 Total: -1.00 -36.58 389.26 -9.76 -46.34 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.11 Total: 6.27 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -3.24 Total: 0.05 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.42 Total: -53.72 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: 0.16 Total: -21.84 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.58 -9.76 -46.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120383653.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.622 kcal (2) G-P(sol) polarization free energy of solvation -36.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds