Wall clock time and date at job start Wed Apr 1 2020 04:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47075 * 2 1 4 4 C 1.46897 * 111.00170 * 293.79152 * 3 2 1 5 5 C 1.50700 * 109.47353 * 287.67033 * 4 3 2 6 6 O 1.21301 * 119.99765 * 354.44073 * 5 4 3 7 7 N 1.34771 * 120.00341 * 174.44495 * 5 4 3 8 8 C 1.40122 * 120.00136 * 185.10277 * 7 5 4 9 9 C 1.38724 * 120.08946 * 332.43789 * 8 7 5 10 10 C 1.38204 * 119.98694 * 179.97438 * 9 8 7 11 11 C 1.38281 * 120.16187 * 359.97438 * 10 9 8 12 12 C 1.38242 * 120.17694 * 0.02562 * 11 10 9 13 13 C 1.38558 * 120.01762 * 359.70489 * 12 11 10 14 14 O 1.35969 * 120.08118 * 180.29789 * 13 12 11 15 15 C 1.42900 * 117.00326 * 0.25067 * 14 13 12 16 16 C 1.46896 * 110.99679 * 57.74266 * 3 2 1 17 17 C 1.52998 * 109.47272 * 66.04870 * 16 3 2 18 18 H 1.09009 * 109.46909 * 304.99807 * 17 16 3 19 19 C 1.47199 * 109.47330 * 64.99656 * 17 16 3 20 20 N 4.43037 * 135.14267 * 52.42385 * 2 1 3 21 21 C 1.52999 * 109.47642 * 184.99822 * 17 16 3 22 22 C 1.50699 * 109.47313 * 174.99645 * 21 17 16 23 23 H 1.07998 * 120.00204 * 0.02562 * 22 21 17 24 24 C 1.37879 * 120.00014 * 179.72213 * 22 21 17 25 25 N 1.31515 * 119.99893 * 0.27996 * 24 22 21 26 26 Si 1.86794 * 120.00111 * 180.27667 * 24 22 21 27 27 H 1.48501 * 109.47107 * 60.00192 * 26 24 22 28 28 H 1.48501 * 109.47249 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47461 * 300.00271 * 26 24 22 30 30 H 1.08995 * 109.47060 * 302.09082 * 1 2 3 31 31 H 1.09001 * 109.47193 * 62.09185 * 1 2 3 32 32 H 1.09002 * 109.47170 * 182.08831 * 1 2 3 33 33 H 1.09005 * 109.46820 * 240.00179 * 2 1 3 34 34 H 1.08991 * 109.47104 * 120.00546 * 2 1 3 35 35 H 1.09003 * 109.47209 * 47.67107 * 4 3 2 36 36 H 1.09002 * 109.47275 * 167.66521 * 4 3 2 37 37 H 0.96997 * 119.99976 * 5.10300 * 7 5 4 38 38 H 1.07999 * 120.01182 * 359.95514 * 9 8 7 39 39 H 1.07991 * 119.91960 * 179.97438 * 10 9 8 40 40 H 1.07995 * 119.90930 * 180.02562 * 11 10 9 41 41 H 1.08010 * 119.99320 * 179.97438 * 12 11 10 42 42 H 1.09001 * 109.46899 * 299.99807 * 15 14 13 43 43 H 1.08994 * 109.47142 * 60.00017 * 15 14 13 44 44 H 1.09007 * 109.47419 * 180.02562 * 15 14 13 45 45 H 1.08999 * 109.47374 * 306.04663 * 16 3 2 46 46 H 1.08996 * 109.47129 * 186.04403 * 16 3 2 47 47 H 1.08999 * 109.46786 * 54.99734 * 21 17 16 48 48 H 1.09003 * 109.46949 * 294.99824 * 21 17 16 49 49 H 0.97002 * 120.00493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6736 2.0658 -1.2548 5 6 2.5301 1.5269 -2.3716 6 8 3.4163 0.7351 -2.1282 7 7 2.3116 1.9247 -3.6406 8 6 3.0352 1.3447 -4.6910 9 6 4.3027 0.8297 -4.4614 10 6 5.0143 0.2577 -5.4989 11 6 4.4658 0.1966 -6.7668 12 6 3.2033 0.7077 -7.0033 13 6 2.4811 1.2778 -5.9673 14 8 1.2369 1.7755 -6.1971 15 6 0.7329 1.6726 -7.5303 16 6 1.5050 2.1252 1.1598 17 6 2.0896 1.5325 2.4435 18 1 1.8764 0.4641 2.4803 19 6 3.5463 1.7431 2.4622 20 7 4.6706 1.9056 2.4766 21 6 1.4592 2.2204 3.6561 22 6 1.9421 1.5544 4.9187 23 1 2.6302 0.7239 4.8621 24 6 1.5104 2.0094 6.1466 25 7 0.6730 3.0211 6.2157 26 14 2.1150 1.1889 7.7120 27 1 3.5940 1.2981 7.7887 28 1 1.5069 1.8596 8.8891 29 1 1.7243 -0.2438 7.7027 30 1 -0.3633 0.5459 0.8706 31 1 -0.3633 0.4810 -0.9081 32 1 -0.3633 -1.0270 0.0374 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.6229 1.8901 -1.4857 36 1 1.8478 3.1364 -1.1475 37 1 1.6535 2.6124 -3.8267 38 1 4.7334 0.8760 -3.4721 39 1 6.0010 -0.1425 -5.3190 40 1 5.0253 -0.2517 -7.5745 41 1 2.7780 0.6588 -7.9949 42 1 1.3935 2.2098 -8.2108 43 1 0.6869 0.6232 -7.8213 44 1 -0.2659 2.1067 -7.5758 45 1 0.4180 2.0488 1.1864 46 1 1.7937 3.1732 1.0792 47 1 0.3739 2.1406 3.5955 48 1 1.7463 3.2719 3.6672 49 1 0.3695 3.3415 7.0795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123084715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:37 Heat of formation + Delta-G solvation = -7.480146 kcal Electronic energy + Delta-G solvation = -29678.859870 eV Core-core repulsion = 25607.000205 eV Total energy + Delta-G solvation = -4071.859665 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.04875 -39.76890 -38.28228 -37.37244 -35.68509 -34.86500 -33.57194 -31.79682 -30.94740 -30.38549 -29.81077 -27.95561 -27.42959 -25.73544 -24.07667 -23.15517 -22.45631 -21.79032 -20.86418 -19.94634 -18.68374 -17.52966 -17.24857 -16.80999 -16.48448 -16.32189 -16.01381 -15.84544 -15.29171 -15.01828 -14.80222 -14.46473 -14.39696 -14.12142 -13.80848 -13.72619 -13.20283 -13.02340 -12.78506 -12.55981 -12.53987 -12.27533 -12.11393 -11.92967 -11.90508 -11.65026 -11.58363 -11.47111 -11.39712 -11.18699 -11.03695 -10.77064 -10.63676 -10.56011 -10.53743 -10.08931 -9.72491 -9.49236 -9.21307 -8.85277 -8.43614 -8.15964 -8.05289 -6.08056 -4.10768 1.02694 1.14616 2.50517 2.70798 2.90601 3.33053 3.36934 3.41399 3.56097 3.80980 3.91571 4.03539 4.43276 4.46983 4.56894 4.59494 4.73245 4.78043 4.92030 4.96759 5.01166 5.07723 5.11782 5.18061 5.22142 5.30200 5.32073 5.35666 5.46319 5.58159 5.60943 5.72098 5.84171 5.87783 5.96335 6.00708 6.17157 6.23101 6.30443 6.35777 6.44118 6.53238 6.57453 6.96531 7.05558 7.15242 7.28548 7.43190 7.54525 7.87465 8.05449 8.25296 8.67416 8.93800 9.54536 11.02782 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002033 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.616363 B =13767.093441 C =14407.618507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 N -0.520 5.520 4 C 0.034 3.966 5 C 0.513 3.487 6 O -0.496 6.496 7 N -0.669 5.669 8 C 0.126 3.874 9 C -0.098 4.098 10 C -0.135 4.135 11 C -0.103 4.103 12 C -0.191 4.191 13 C 0.093 3.907 14 O -0.320 6.320 15 C 0.030 3.970 16 C 0.058 3.942 17 C 0.012 3.988 18 H 0.101 0.899 19 C 0.254 3.746 20 N -0.477 5.477 21 C 0.033 3.967 22 C -0.525 4.525 23 H 0.056 0.944 24 C 0.062 3.938 25 N -0.892 5.892 26 Si 0.891 3.109 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.275 1.275 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.413 0.587 38 H 0.160 0.840 39 H 0.127 0.873 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.037 0.963 48 H 0.026 0.974 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -2.584 -30.059 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.082 4.082 3 N -0.243 5.243 4 C -0.097 4.097 5 C 0.301 3.699 6 O -0.368 6.368 7 N -0.315 5.315 8 C 0.031 3.969 9 C -0.118 4.118 10 C -0.154 4.154 11 C -0.122 4.122 12 C -0.211 4.211 13 C 0.046 3.954 14 O -0.234 6.234 15 C -0.065 4.065 16 C -0.070 4.070 17 C -0.010 4.010 18 H 0.119 0.881 19 C -0.063 4.063 20 N -0.154 5.154 21 C -0.006 4.006 22 C -0.563 4.563 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.531 5.531 26 Si 0.719 3.281 27 H -0.202 1.202 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.125 0.875 37 H 0.248 0.752 38 H 0.177 0.823 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.118 0.882 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.044 0.956 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.043 -2.717 -29.471 29.615 hybrid contribution -1.382 -0.174 0.369 1.441 sum -2.425 -2.890 -29.102 29.346 Atomic orbital electron populations 1.22480 0.98295 1.02743 1.02043 1.22264 0.92479 0.89642 1.03837 1.61903 1.59756 1.02447 1.00236 1.21963 0.97532 1.00380 0.89831 1.20933 0.84918 0.81349 0.82742 1.90653 1.30742 1.32902 1.82528 1.43408 1.41676 1.41156 1.05265 1.17161 0.92173 1.02352 0.85187 1.21607 0.91387 0.97235 1.01553 1.21067 1.00536 1.01311 0.92448 1.20931 0.94810 0.99249 0.97211 1.21016 0.96887 1.04930 0.98229 1.18724 0.85209 0.98127 0.93321 1.85996 1.28865 1.77191 1.31365 1.23035 0.99787 1.01833 0.81821 1.22364 0.98385 0.97990 0.88304 1.19209 0.82473 1.02863 0.96412 0.88141 1.28806 0.94710 0.92175 0.90578 1.80981 1.13361 1.09918 1.11110 1.19161 0.96300 0.96069 0.89074 1.21103 1.27768 1.16675 0.90768 0.92541 1.24946 0.94908 0.94929 0.99184 1.69925 1.32436 1.25475 1.25271 0.86655 0.79234 0.79659 0.82542 1.20213 1.21234 1.20065 0.91117 0.93152 0.91920 0.90421 0.89669 0.90999 0.87502 0.75164 0.82264 0.85524 0.85848 0.85311 0.92680 0.92660 0.88187 0.91984 0.90167 0.94499 0.95576 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 9.27 37.16 0.34 -1.77 16 2 C 0.05 0.59 5.50 -3.82 -0.02 0.57 16 3 N -0.52 -7.14 4.00 -236.08 -0.94 -8.09 16 4 C 0.03 0.37 5.35 -4.98 -0.03 0.34 16 5 C 0.51 6.31 7.28 -10.99 -0.08 6.23 16 6 O -0.50 -7.90 12.18 5.54 0.07 -7.84 16 7 N -0.67 -6.85 5.26 -9.75 -0.05 -6.90 16 8 C 0.13 1.43 6.44 -83.49 -0.54 0.90 16 9 C -0.10 -1.18 8.78 -39.41 -0.35 -1.52 16 10 C -0.13 -1.34 10.04 -39.58 -0.40 -1.74 16 11 C -0.10 -0.87 10.04 -39.56 -0.40 -1.27 16 12 C -0.19 -1.60 9.04 -39.46 -0.36 -1.95 16 13 C 0.09 0.91 6.70 -39.07 -0.26 0.65 16 14 O -0.32 -2.70 9.95 -19.64 -0.20 -2.90 16 15 C 0.03 0.14 9.81 101.05 0.99 1.13 16 16 C 0.06 0.83 4.03 -3.83 -0.02 0.82 16 17 C 0.01 0.23 2.13 -93.41 -0.20 0.03 16 18 H 0.10 1.78 6.38 -51.92 -0.33 1.45 16 19 C 0.25 5.50 13.67 -20.76 -0.28 5.22 16 20 N -0.48 -11.30 18.54 42.16 0.78 -10.52 16 21 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 22 C -0.53 -13.99 8.60 -34.44 -0.30 -14.28 16 23 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 26 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 30 H 0.07 0.80 6.12 -51.93 -0.32 0.48 16 31 H 0.05 0.48 6.43 -51.93 -0.33 0.15 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.08 1.07 6.58 -51.93 -0.34 0.73 16 34 H 0.08 1.19 6.47 -51.93 -0.34 0.86 16 35 H 0.07 0.61 6.06 -51.93 -0.31 0.30 16 36 H 0.11 0.97 7.80 -51.93 -0.41 0.57 16 37 H 0.41 3.16 8.41 -40.82 -0.34 2.81 16 38 H 0.16 2.23 5.64 -52.49 -0.30 1.94 16 39 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.75 6.30 -52.48 -0.33 0.42 16 42 H 0.05 0.21 7.65 -51.93 -0.40 -0.19 16 43 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 44 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.06 0.79 5.89 -51.93 -0.31 0.49 16 46 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 47 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 400.50 15.07 6.04 6.04 Total: -1.00 -33.95 400.50 -7.62 -41.57 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.93 Total: 1.32 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -2.10 Total: -4.40 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.52 Total: -50.20 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.13 Total: -10.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.95 -7.62 -41.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123084715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.091 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds