Wall clock time and date at job start Wed Apr 1 2020 04:02:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.47075 * 2 1 4 4 C 1.46897 * 111.00170 * 293.79152 * 3 2 1 5 5 C 1.50700 * 109.47353 * 287.67033 * 4 3 2 6 6 O 1.21301 * 119.99765 * 354.44073 * 5 4 3 7 7 N 1.34771 * 120.00341 * 174.44495 * 5 4 3 8 8 C 1.40122 * 120.00136 * 185.10277 * 7 5 4 9 9 C 1.38724 * 120.08946 * 332.43789 * 8 7 5 10 10 C 1.38204 * 119.98694 * 179.97438 * 9 8 7 11 11 C 1.38281 * 120.16187 * 359.97438 * 10 9 8 12 12 C 1.38242 * 120.17694 * 0.02562 * 11 10 9 13 13 C 1.38558 * 120.01762 * 359.70489 * 12 11 10 14 14 O 1.35969 * 120.08118 * 180.29789 * 13 12 11 15 15 C 1.42900 * 117.00326 * 0.25067 * 14 13 12 16 16 C 1.46896 * 110.99679 * 57.74266 * 3 2 1 17 17 C 1.52998 * 109.47272 * 66.04870 * 16 3 2 18 18 H 1.09009 * 109.46909 * 304.99807 * 17 16 3 19 19 C 1.47199 * 109.47330 * 64.99656 * 17 16 3 20 20 N 4.43037 * 135.14267 * 52.42385 * 2 1 3 21 21 C 1.52999 * 109.47642 * 184.99822 * 17 16 3 22 22 C 1.50699 * 109.47313 * 174.99645 * 21 17 16 23 23 H 1.07998 * 120.00204 * 0.02562 * 22 21 17 24 24 C 1.37879 * 120.00014 * 179.72213 * 22 21 17 25 25 N 1.31515 * 119.99893 * 0.27996 * 24 22 21 26 26 Si 1.86794 * 120.00111 * 180.27667 * 24 22 21 27 27 H 1.48501 * 109.47107 * 60.00192 * 26 24 22 28 28 H 1.48501 * 109.47249 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47461 * 300.00271 * 26 24 22 30 30 H 1.08995 * 109.47060 * 302.09082 * 1 2 3 31 31 H 1.09001 * 109.47193 * 62.09185 * 1 2 3 32 32 H 1.09002 * 109.47170 * 182.08831 * 1 2 3 33 33 H 1.09005 * 109.46820 * 240.00179 * 2 1 3 34 34 H 1.08991 * 109.47104 * 120.00546 * 2 1 3 35 35 H 1.09003 * 109.47209 * 47.67107 * 4 3 2 36 36 H 1.09002 * 109.47275 * 167.66521 * 4 3 2 37 37 H 0.96997 * 119.99976 * 5.10300 * 7 5 4 38 38 H 1.07999 * 120.01182 * 359.95514 * 9 8 7 39 39 H 1.07991 * 119.91960 * 179.97438 * 10 9 8 40 40 H 1.07995 * 119.90930 * 180.02562 * 11 10 9 41 41 H 1.08010 * 119.99320 * 179.97438 * 12 11 10 42 42 H 1.09001 * 109.46899 * 299.99807 * 15 14 13 43 43 H 1.08994 * 109.47142 * 60.00017 * 15 14 13 44 44 H 1.09007 * 109.47419 * 180.02562 * 15 14 13 45 45 H 1.08999 * 109.47374 * 306.04663 * 16 3 2 46 46 H 1.08996 * 109.47129 * 186.04403 * 16 3 2 47 47 H 1.08999 * 109.46786 * 54.99734 * 21 17 16 48 48 H 1.09003 * 109.46949 * 294.99824 * 21 17 16 49 49 H 0.97002 * 120.00493 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6736 2.0658 -1.2548 5 6 2.5301 1.5269 -2.3716 6 8 3.4163 0.7351 -2.1282 7 7 2.3116 1.9247 -3.6406 8 6 3.0352 1.3447 -4.6910 9 6 4.3027 0.8297 -4.4614 10 6 5.0143 0.2577 -5.4989 11 6 4.4658 0.1966 -6.7668 12 6 3.2033 0.7077 -7.0033 13 6 2.4811 1.2778 -5.9673 14 8 1.2369 1.7755 -6.1971 15 6 0.7329 1.6726 -7.5303 16 6 1.5050 2.1252 1.1598 17 6 2.0896 1.5325 2.4435 18 1 1.8764 0.4641 2.4803 19 6 3.5463 1.7431 2.4622 20 7 4.6706 1.9056 2.4766 21 6 1.4592 2.2204 3.6561 22 6 1.9421 1.5544 4.9187 23 1 2.6302 0.7239 4.8621 24 6 1.5104 2.0094 6.1466 25 7 0.6730 3.0211 6.2157 26 14 2.1150 1.1889 7.7120 27 1 3.5940 1.2981 7.7887 28 1 1.5069 1.8596 8.8891 29 1 1.7243 -0.2438 7.7027 30 1 -0.3633 0.5459 0.8706 31 1 -0.3633 0.4810 -0.9081 32 1 -0.3633 -1.0270 0.0374 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 0.6229 1.8901 -1.4857 36 1 1.8478 3.1364 -1.1475 37 1 1.6535 2.6124 -3.8267 38 1 4.7334 0.8760 -3.4721 39 1 6.0010 -0.1425 -5.3190 40 1 5.0253 -0.2517 -7.5745 41 1 2.7780 0.6588 -7.9949 42 1 1.3935 2.2098 -8.2108 43 1 0.6869 0.6232 -7.8213 44 1 -0.2659 2.1067 -7.5758 45 1 0.4180 2.0488 1.1864 46 1 1.7937 3.1732 1.0792 47 1 0.3739 2.1406 3.5955 48 1 1.7463 3.2719 3.6672 49 1 0.3695 3.3415 7.0795 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000123084715.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:35 Heat of formation + Delta-G solvation = -29.499118 kcal Electronic energy + Delta-G solvation = -29679.814685 eV Core-core repulsion = 25607.000205 eV Total energy + Delta-G solvation = -4072.814479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84115 -40.59246 -39.36698 -38.14807 -37.23678 -35.75394 -35.46166 -33.55986 -31.80128 -31.11154 -30.67474 -29.19999 -28.05724 -27.03698 -25.34343 -24.09154 -23.53533 -23.11671 -21.89223 -20.90629 -19.37604 -18.52731 -18.34308 -18.14684 -18.00945 -17.20011 -16.79585 -16.63452 -16.53236 -16.12483 -15.86640 -15.70729 -15.41490 -15.04172 -14.80099 -14.69452 -14.36917 -14.36363 -13.97334 -13.72653 -13.71578 -13.61267 -13.22112 -13.11864 -12.99506 -12.89665 -12.72204 -12.58842 -12.57245 -12.37897 -12.32176 -12.17375 -12.00231 -11.88975 -11.56805 -11.43893 -11.35216 -11.14848 -10.60458 -10.52626 -9.59436 -9.14747 -8.79438 -8.17913 -6.25120 0.27408 0.41794 1.41167 1.43040 1.49921 1.62223 1.91328 2.09708 2.17524 2.31827 2.42779 2.82338 3.01608 3.17517 3.37850 3.69691 3.90926 4.01401 4.04047 4.17048 4.24653 4.29469 4.38194 4.42122 4.44802 4.46814 4.49593 4.52874 4.58791 4.65278 4.74031 4.79118 4.79875 4.84311 4.93122 5.11162 5.15328 5.21196 5.31820 5.44783 5.49833 5.50686 5.61166 5.65142 5.81114 5.83795 5.99329 6.10115 6.24690 6.41077 6.49893 6.85076 6.96124 7.20034 7.42733 8.92514 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002033 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.616363 B =13767.093441 C =14407.618507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.049 3.951 3 N -0.543 5.543 4 C 0.037 3.963 5 C 0.511 3.489 6 O -0.540 6.540 7 N -0.657 5.657 8 C 0.101 3.899 9 C -0.121 4.121 10 C -0.147 4.147 11 C -0.098 4.098 12 C -0.190 4.190 13 C 0.093 3.907 14 O -0.331 6.331 15 C 0.020 3.980 16 C 0.069 3.931 17 C 0.021 3.979 18 H 0.112 0.888 19 C 0.265 3.735 20 N -0.518 5.518 21 C 0.041 3.959 22 C -0.539 4.539 23 H 0.049 0.951 24 C 0.014 3.986 25 N -0.920 5.920 26 Si 0.945 3.055 27 H -0.284 1.284 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.425 0.575 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.153 0.847 41 H 0.159 0.841 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.119 0.881 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.040 0.960 48 H 0.004 0.996 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -2.817 -32.385 32.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.079 4.079 3 N -0.266 5.266 4 C -0.093 4.093 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.303 5.303 8 C 0.006 3.994 9 C -0.142 4.142 10 C -0.166 4.166 11 C -0.117 4.117 12 C -0.209 4.209 13 C 0.046 3.954 14 O -0.245 6.245 15 C -0.074 4.074 16 C -0.059 4.059 17 C -0.001 4.001 18 H 0.129 0.871 19 C -0.051 4.051 20 N -0.196 5.196 21 C 0.002 3.998 22 C -0.577 4.577 23 H 0.068 0.932 24 C -0.186 4.186 25 N -0.560 5.560 26 Si 0.771 3.229 27 H -0.210 1.210 28 H -0.206 1.206 29 H -0.189 1.189 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.143 0.857 37 H 0.263 0.737 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.171 0.829 41 H 0.176 0.824 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.137 0.863 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.059 0.941 48 H 0.022 0.978 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.783 -2.937 -31.834 32.090 hybrid contribution -0.849 -0.111 0.961 1.287 sum -3.632 -3.048 -30.873 31.235 Atomic orbital electron populations 1.22396 0.96161 1.03420 1.02709 1.22163 0.94145 0.89144 1.02431 1.61728 1.60841 1.02874 1.01204 1.22048 0.98656 1.00855 0.87778 1.21257 0.84466 0.80765 0.83586 1.90652 1.32651 1.35076 1.83256 1.43261 1.41455 1.41001 1.04587 1.17322 0.92356 1.03452 0.86239 1.21477 0.92513 0.99160 1.01009 1.21254 1.01023 1.01450 0.92888 1.21278 0.95010 0.98283 0.97104 1.21405 0.96633 1.03675 0.99177 1.18794 0.85913 0.97840 0.92899 1.85984 1.28053 1.76905 1.33598 1.23346 1.00880 1.02835 0.80345 1.22200 0.99366 0.97762 0.86571 1.19221 0.80378 1.03355 0.97126 0.87054 1.29448 0.95357 0.90970 0.89333 1.80974 1.14739 1.11367 1.12527 1.18975 0.96513 0.94729 0.89549 1.21506 1.27263 1.16495 0.92471 0.93249 1.25655 0.95280 0.95604 1.02020 1.70005 1.33503 1.26567 1.25920 0.85807 0.78118 0.79434 0.79560 1.20984 1.20560 1.18871 0.91317 0.91484 0.91267 0.91616 0.91340 0.88001 0.85676 0.73730 0.85126 0.84672 0.82929 0.82360 0.91462 0.91836 0.86319 0.89515 0.89698 0.94132 0.97767 0.92699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.63 9.27 71.98 0.67 -2.96 16 2 C 0.05 1.24 5.50 86.30 0.47 1.71 16 3 N -0.54 -14.42 4.00 -900.82 -3.60 -18.02 16 4 C 0.04 0.73 5.35 85.56 0.46 1.19 16 5 C 0.51 12.57 7.28 87.66 0.64 13.21 16 6 O -0.54 -18.08 12.18 -3.10 -0.04 -18.12 16 7 N -0.66 -13.20 5.26 -303.13 -1.59 -14.80 16 8 C 0.10 2.30 6.44 38.19 0.25 2.55 16 9 C -0.12 -3.07 8.78 22.38 0.20 -2.88 16 10 C -0.15 -2.93 10.04 22.27 0.22 -2.71 16 11 C -0.10 -1.47 10.04 22.28 0.22 -1.24 16 12 C -0.19 -2.72 9.04 22.35 0.20 -2.51 16 13 C 0.09 1.68 6.70 22.60 0.15 1.83 16 14 O -0.33 -4.87 9.95 -93.20 -0.93 -5.80 16 15 C 0.02 0.13 9.81 113.37 1.11 1.24 16 16 C 0.07 1.89 4.03 86.30 0.35 2.24 16 17 C 0.02 0.77 2.13 -12.60 -0.03 0.75 16 18 H 0.11 3.89 6.38 -2.38 -0.02 3.88 16 19 C 0.26 11.60 13.67 89.44 1.22 12.82 16 20 N -0.52 -25.10 18.54 20.01 0.37 -24.72 16 21 C 0.04 1.88 4.42 29.85 0.13 2.01 16 22 C -0.54 -28.79 8.60 25.60 0.22 -28.57 16 23 H 0.05 2.65 7.59 -2.91 -0.02 2.63 16 24 C 0.01 0.75 5.46 84.66 0.46 1.21 16 25 N -0.92 -52.44 13.29 21.45 0.28 -52.16 16 26 Si 0.94 43.88 29.54 68.60 2.03 45.91 16 27 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 28 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 29 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 30 H 0.07 1.37 6.12 -2.39 -0.01 1.35 16 31 H 0.07 1.06 6.43 -2.39 -0.02 1.05 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 1.83 6.58 -2.38 -0.02 1.82 16 34 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 35 H 0.10 1.42 6.06 -2.39 -0.01 1.40 16 36 H 0.13 2.01 7.80 -2.39 -0.02 1.99 16 37 H 0.42 5.99 8.41 -92.71 -0.78 5.21 16 38 H 0.13 4.05 5.64 -2.91 -0.02 4.03 16 39 H 0.14 2.28 8.06 -2.92 -0.02 2.26 16 40 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.16 1.25 6.30 -2.91 -0.02 1.23 16 42 H 0.07 0.28 7.65 -2.39 -0.02 0.26 16 43 H 0.06 0.32 7.67 -2.39 -0.02 0.30 16 44 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 45 H 0.09 1.97 5.89 -2.39 -0.01 1.96 16 46 H 0.08 2.26 7.86 -2.39 -0.02 2.24 16 47 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 49 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -75.23 400.50 3.68 -71.55 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.21 Total: 16.27 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 6.95 Total: -0.12 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.54 Total: -109.70 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.97 Total: -23.91 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -75.23 3.68 -71.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123084715.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.053 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds