Wall clock time and date at job start Wed Apr 1 2020 05:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98217 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.01896 * 179.97438 * 5 4 3 7 7 C 1.38883 * 119.97644 * 359.97438 * 6 5 4 8 8 N 1.39950 * 120.01312 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00201 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99725 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99814 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99590 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47150 * 90.00477 * 13 12 10 15 15 H 1.08002 * 120.00065 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00195 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99810 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47385 * 89.99910 * 18 16 14 20 20 H 1.48497 * 109.47248 * 209.99905 * 18 16 14 21 21 H 1.48500 * 109.47190 * 329.99823 * 18 16 14 22 22 C 1.46497 * 120.00372 * 0.02562 * 12 10 9 23 23 C 1.53001 * 109.47644 * 89.99364 * 22 12 10 24 24 C 1.47200 * 109.47059 * 179.97438 * 23 22 12 25 25 N 9.36107 * 152.92744 * 199.83804 * 2 1 3 26 26 C 1.38832 * 119.96873 * 0.02562 * 7 6 5 27 27 C 1.50700 * 120.01385 * 180.02562 * 26 7 6 28 28 C 1.38136 * 119.97713 * 359.74134 * 26 7 6 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 34 34 H 1.07994 * 119.99207 * 0.02562 * 5 4 3 35 35 H 1.08000 * 120.01269 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99395 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46960 * 300.00300 * 9 8 7 38 38 H 1.09009 * 109.46777 * 59.99734 * 9 8 7 39 39 H 1.09001 * 109.46813 * 210.00430 * 13 12 10 40 40 H 1.09004 * 109.47022 * 330.00041 * 13 12 10 41 41 H 0.96997 * 119.99840 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.46770 * 209.99707 * 22 12 10 43 43 H 1.08997 * 109.46887 * 329.99113 * 22 12 10 44 44 H 1.08997 * 109.46553 * 300.00333 * 23 22 12 45 45 H 1.09005 * 109.46898 * 59.99780 * 23 22 12 46 46 H 1.09000 * 109.46673 * 89.99956 * 27 26 7 47 47 H 1.08994 * 109.47356 * 209.99662 * 27 26 7 48 48 H 1.09003 * 109.47072 * 330.00389 * 27 26 7 49 49 H 1.07999 * 119.99381 * 180.25296 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4251 0.0005 6 6 5.5684 0.6052 0.0005 7 6 6.0995 1.8884 0.0000 8 7 7.4870 2.0718 -0.0005 9 6 8.3794 0.9100 -0.0011 10 6 9.8122 1.3772 -0.0022 11 8 10.0631 2.5638 -0.0020 12 7 10.8146 0.4764 -0.0024 13 6 12.2075 0.9306 -0.0029 14 6 12.6856 1.0864 1.4177 15 1 12.0185 0.8693 2.2388 16 6 13.9746 1.5062 1.6692 17 7 14.3917 1.6427 2.9089 18 14 15.1281 1.8824 0.2489 19 1 15.0002 3.3133 -0.1271 20 1 16.5272 1.6017 0.6598 21 1 14.7740 1.0311 -0.9153 22 6 10.5115 -0.9569 -0.0020 23 6 10.4054 -1.4562 -1.4444 24 6 10.1014 -2.8965 -1.4439 25 7 9.8654 -4.0076 -1.4458 26 6 5.2535 2.9892 0.0001 27 6 5.8287 4.3821 -0.0011 28 6 3.8842 2.8072 -0.0048 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.7861 -0.5726 -0.0003 35 1 6.2259 -0.2516 0.0001 36 1 7.8576 2.9682 -0.0012 37 1 8.1935 0.3087 0.8888 38 1 8.1928 0.3090 -0.8912 39 1 12.8286 0.1970 -0.5169 40 1 12.2769 1.8893 -0.5169 41 1 15.2984 1.9384 3.0858 42 1 11.3073 -1.4964 0.5116 43 1 9.5659 -1.1281 0.5123 44 1 9.6096 -0.9167 -1.9579 45 1 11.3511 -1.2849 -1.9587 46 1 5.9667 4.7173 -1.0290 47 1 5.1452 5.0579 0.5128 48 1 6.7904 4.3784 0.5120 49 1 3.2258 3.6633 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125345795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:10 Heat of formation + Delta-G solvation = -18.014285 kcal Electronic energy + Delta-G solvation = -29383.298570 eV Core-core repulsion = 25310.982110 eV Total energy + Delta-G solvation = -4072.316460 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.35858 -39.63242 -38.23693 -37.02654 -35.58884 -34.74045 -32.90234 -32.65613 -31.91873 -31.14239 -29.58891 -28.22178 -27.11582 -25.94812 -24.18636 -23.74322 -22.74505 -21.51689 -20.93041 -18.84757 -17.97598 -17.87576 -17.49551 -16.91101 -16.62834 -16.23700 -15.93100 -15.60655 -15.35725 -14.86247 -14.75709 -14.39507 -14.11267 -13.95986 -13.77860 -13.51031 -13.28977 -13.18694 -13.06857 -12.87754 -12.81430 -12.61926 -12.59075 -12.57177 -12.33468 -11.98926 -11.84174 -11.78227 -11.73824 -11.68365 -11.17463 -11.08544 -10.93568 -10.77422 -10.64272 -10.30296 -9.69127 -9.57484 -9.37350 -8.83873 -8.69323 -8.08456 -7.09191 -6.18566 -4.19136 1.27200 1.61882 2.59520 2.69948 2.97401 3.10927 3.17368 3.22068 3.26749 3.30833 3.64468 3.77249 4.04078 4.29604 4.64171 4.64866 4.69138 4.77759 4.84508 4.85781 4.94414 4.95439 5.07431 5.13729 5.15419 5.17652 5.27661 5.37069 5.41016 5.41964 5.48743 5.55718 5.61999 5.63413 5.70685 5.84162 5.91332 5.94519 6.16580 6.32455 6.36405 6.45773 6.62780 6.74528 7.01335 7.22329 7.44901 7.45825 7.47289 7.78613 7.93480 8.32074 8.59449 8.84510 9.40073 10.94465 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.002437 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.793718 B =11485.209725 C =13153.466223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.322 6.322 4 C 0.068 3.932 5 C -0.162 4.162 6 C -0.161 4.161 7 C 0.193 3.807 8 N -0.734 5.734 9 C 0.103 3.897 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.587 5.587 13 C 0.215 3.785 14 C -0.534 4.534 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.893 5.893 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.114 3.886 23 C -0.051 4.051 24 C 0.215 3.785 25 N -0.440 5.440 26 C -0.121 4.121 27 C -0.109 4.109 28 C -0.103 4.103 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.412 0.588 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.100 0.900 43 H 0.080 0.920 44 H 0.108 0.892 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.542 -2.861 -8.803 23.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.237 6.237 4 C 0.022 3.978 5 C -0.181 4.181 6 C -0.184 4.184 7 C 0.090 3.910 8 N -0.369 5.369 9 C -0.025 4.025 10 C 0.292 3.708 11 O -0.404 6.404 12 N -0.318 5.318 13 C 0.095 3.905 14 C -0.572 4.572 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.012 4.012 23 C -0.093 4.093 24 C -0.103 4.103 25 N -0.117 5.117 26 C -0.126 4.126 27 C -0.166 4.166 28 C -0.122 4.122 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.252 0.748 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.119 0.881 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.135 0.865 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -21.593 -3.845 -8.686 23.590 hybrid contribution 1.129 0.492 -0.516 1.335 sum -20.465 -3.353 -9.202 22.687 Atomic orbital electron populations 1.21764 0.93104 1.02629 1.03373 1.22674 0.95537 0.82580 1.01102 1.86034 1.19276 1.28500 1.89891 1.18654 0.82020 0.93910 1.03207 1.20927 0.93559 0.97706 1.05918 1.20411 0.94673 0.95280 1.08019 1.17534 0.83432 0.93131 0.96881 1.44483 1.01344 1.08717 1.82364 1.21162 0.88664 0.89932 1.02759 1.20241 0.86625 0.86646 0.77280 1.90684 1.84078 1.16277 1.49344 1.47830 1.08089 1.04313 1.71582 1.19773 0.76028 0.95975 0.98744 1.21270 0.98306 1.46573 0.91100 0.90625 1.24863 0.97900 0.94615 0.95572 1.69888 1.18081 1.46447 1.18705 0.86866 0.80489 0.79577 0.82810 1.19892 1.21061 1.18984 1.21398 1.03668 0.82872 0.93281 1.19883 1.05436 0.82613 1.01334 1.28997 0.93074 0.94953 0.93321 1.81224 1.09354 1.12729 1.08368 1.19150 0.91984 0.94646 1.06798 1.20645 1.01156 0.92462 1.02323 1.19994 0.93646 0.94735 1.03819 0.90608 0.91627 0.91653 0.92357 0.92405 0.85899 0.85856 0.74811 0.89597 0.89908 0.94755 0.94159 0.92430 0.88146 0.90155 0.87440 0.86540 0.91252 0.91362 0.91418 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.44 5.46 37.16 0.20 0.64 16 3 O -0.32 -3.56 10.14 -19.76 -0.20 -3.76 16 4 C 0.07 0.79 6.69 -39.24 -0.26 0.53 16 5 C -0.16 -1.75 9.03 -39.46 -0.36 -2.10 16 6 C -0.16 -1.81 9.31 -39.40 -0.37 -2.18 16 7 C 0.19 2.39 6.64 -83.69 -0.56 1.84 16 8 N -0.73 -9.58 5.61 -59.76 -0.34 -9.91 16 9 C 0.10 1.25 3.95 -5.20 -0.02 1.23 16 10 C 0.51 8.40 7.74 -10.99 -0.09 8.32 16 11 O -0.53 -11.03 15.25 5.56 0.08 -10.95 16 12 N -0.59 -9.61 2.46 -175.05 -0.43 -10.04 16 13 C 0.21 4.50 4.23 -5.19 -0.02 4.48 16 14 C -0.53 -13.99 9.94 -34.44 -0.34 -14.33 16 15 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.89 -26.28 13.96 55.43 0.77 -25.50 16 18 Si 0.88 20.10 27.47 -169.99 -4.67 15.43 16 19 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.27 -5.57 6.54 56.52 0.37 -5.20 16 22 C 0.11 1.32 5.17 -4.04 -0.02 1.30 16 23 C -0.05 -0.45 6.03 -29.52 -0.18 -0.62 16 24 C 0.21 2.30 15.43 -20.76 -0.32 1.98 16 25 N -0.44 -5.98 18.54 42.15 0.78 -5.19 16 26 C -0.12 -1.43 5.90 -104.44 -0.62 -2.05 16 27 C -0.11 -1.12 9.57 36.01 0.34 -0.78 16 28 C -0.10 -1.19 9.64 -39.46 -0.38 -1.57 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.12 1.07 6.29 -52.49 -0.33 0.74 16 35 H 0.12 1.18 6.73 -52.49 -0.35 0.83 16 36 H 0.41 5.86 5.43 -40.82 -0.22 5.64 16 37 H 0.09 0.96 7.21 -51.93 -0.37 0.58 16 38 H 0.08 0.77 7.00 -51.92 -0.36 0.41 16 39 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 40 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 43 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 44 H 0.11 0.72 7.22 -51.93 -0.38 0.34 16 45 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 48 H 0.07 0.75 6.54 -51.93 -0.34 0.41 16 49 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 408.07 15.07 6.15 6.15 Total: -1.00 -33.72 408.07 -7.72 -41.44 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.18 Total: 4.24 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.69 Total: -1.90 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.79 Total: -50.65 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.12 Total: -14.71 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.72 -7.72 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125345795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.425 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds