Wall clock time and date at job start Wed Apr 1 2020 05:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46726 * 2 1 4 4 C 1.36007 * 116.99577 * 179.97438 * 3 2 1 5 5 C 1.38722 * 119.98217 * 0.02562 * 4 3 2 6 6 C 1.38089 * 120.01896 * 179.97438 * 5 4 3 7 7 C 1.38883 * 119.97644 * 359.97438 * 6 5 4 8 8 N 1.39950 * 120.01312 * 180.02562 * 7 6 5 9 9 C 1.46495 * 120.00201 * 0.02562 * 8 7 6 10 10 C 1.50701 * 109.47234 * 179.97438 * 9 8 7 11 11 O 1.21282 * 119.99725 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99814 * 179.97438 * 10 9 8 13 13 C 1.46508 * 119.99590 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47150 * 90.00477 * 13 12 10 15 15 H 1.08002 * 120.00065 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00095 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00195 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99810 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47385 * 89.99910 * 18 16 14 20 20 H 1.48497 * 109.47248 * 209.99905 * 18 16 14 21 21 H 1.48500 * 109.47190 * 329.99823 * 18 16 14 22 22 C 1.46497 * 120.00372 * 0.02562 * 12 10 9 23 23 C 1.53001 * 109.47644 * 89.99364 * 22 12 10 24 24 C 1.47200 * 109.47059 * 179.97438 * 23 22 12 25 25 N 9.36107 * 152.92744 * 199.83804 * 2 1 3 26 26 C 1.38832 * 119.96873 * 0.02562 * 7 6 5 27 27 C 1.50700 * 120.01385 * 180.02562 * 26 7 6 28 28 C 1.38136 * 119.97713 * 359.74134 * 26 7 6 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47194 * 299.99575 * 1 2 3 31 31 H 1.08992 * 109.47399 * 59.99748 * 1 2 3 32 32 H 1.09002 * 109.47398 * 120.00244 * 2 1 3 33 33 H 1.09001 * 109.47194 * 240.00425 * 2 1 3 34 34 H 1.07994 * 119.99207 * 0.02562 * 5 4 3 35 35 H 1.08000 * 120.01269 * 180.02562 * 6 5 4 36 36 H 0.97001 * 119.99395 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46960 * 300.00300 * 9 8 7 38 38 H 1.09009 * 109.46777 * 59.99734 * 9 8 7 39 39 H 1.09001 * 109.46813 * 210.00430 * 13 12 10 40 40 H 1.09004 * 109.47022 * 330.00041 * 13 12 10 41 41 H 0.96997 * 119.99840 * 180.02562 * 17 16 14 42 42 H 1.09004 * 109.46770 * 209.99707 * 22 12 10 43 43 H 1.08997 * 109.46887 * 329.99113 * 22 12 10 44 44 H 1.08997 * 109.46553 * 300.00333 * 23 22 12 45 45 H 1.09005 * 109.46898 * 59.99780 * 23 22 12 46 46 H 1.09000 * 109.46673 * 89.99956 * 27 26 7 47 47 H 1.08994 * 109.47356 * 209.99662 * 27 26 7 48 48 H 1.09003 * 109.47072 * 330.00389 * 27 26 7 49 49 H 1.07999 * 119.99381 * 180.25296 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3546 1.5255 0.0005 5 6 4.1993 0.4251 0.0005 6 6 5.5684 0.6052 0.0005 7 6 6.0995 1.8884 0.0000 8 7 7.4870 2.0718 -0.0005 9 6 8.3794 0.9100 -0.0011 10 6 9.8122 1.3772 -0.0022 11 8 10.0631 2.5638 -0.0020 12 7 10.8146 0.4764 -0.0024 13 6 12.2075 0.9306 -0.0029 14 6 12.6856 1.0864 1.4177 15 1 12.0185 0.8693 2.2388 16 6 13.9746 1.5062 1.6692 17 7 14.3917 1.6427 2.9089 18 14 15.1281 1.8824 0.2489 19 1 15.0002 3.3133 -0.1271 20 1 16.5272 1.6017 0.6598 21 1 14.7740 1.0311 -0.9153 22 6 10.5115 -0.9569 -0.0020 23 6 10.4054 -1.4562 -1.4444 24 6 10.1014 -2.8965 -1.4439 25 7 9.8654 -4.0076 -1.4458 26 6 5.2535 2.9892 0.0001 27 6 5.8287 4.3821 -0.0011 28 6 3.8842 2.8072 -0.0048 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.7861 -0.5726 -0.0003 35 1 6.2259 -0.2516 0.0001 36 1 7.8576 2.9682 -0.0012 37 1 8.1935 0.3087 0.8888 38 1 8.1928 0.3090 -0.8912 39 1 12.8286 0.1970 -0.5169 40 1 12.2769 1.8893 -0.5169 41 1 15.2984 1.9384 3.0858 42 1 11.3073 -1.4964 0.5116 43 1 9.5659 -1.1281 0.5123 44 1 9.6096 -0.9167 -1.9579 45 1 11.3511 -1.2849 -1.9587 46 1 5.9667 4.7173 -1.0290 47 1 5.1452 5.0579 0.5128 48 1 6.7904 4.3784 0.5120 49 1 3.2258 3.6633 -0.0089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125345795.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:09 Heat of formation + Delta-G solvation = -39.207636 kcal Electronic energy + Delta-G solvation = -29384.217583 eV Core-core repulsion = 25310.982110 eV Total energy + Delta-G solvation = -4073.235472 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.28177 -40.77574 -39.08043 -38.01621 -36.81168 -35.71515 -34.77476 -33.49522 -32.56359 -32.32915 -30.73070 -29.45771 -28.10480 -26.97007 -25.25385 -24.42403 -24.19230 -22.56141 -21.72805 -20.05587 -19.19452 -18.78349 -18.60353 -18.33789 -17.73091 -16.97119 -16.90102 -16.74003 -16.50605 -16.04402 -15.73445 -15.58042 -15.14623 -15.01859 -14.67423 -14.56737 -14.33583 -14.12198 -14.01326 -13.90159 -13.78635 -13.74409 -13.54348 -13.46364 -13.32323 -13.24626 -13.00455 -12.68724 -12.60328 -12.56860 -12.43636 -12.38932 -11.98656 -11.89979 -11.68907 -11.66375 -11.54059 -10.77936 -10.75484 -10.42279 -9.67686 -9.51750 -8.27624 -7.97769 -6.32523 0.43351 0.75002 1.39262 1.43287 1.50332 1.63681 1.76062 1.87996 2.08868 2.36587 2.43981 2.66608 2.92034 3.06767 3.14132 3.63797 3.91270 3.97992 4.02931 4.09967 4.13123 4.22026 4.28758 4.32536 4.39865 4.41419 4.46581 4.58323 4.62564 4.71109 4.81964 4.82338 4.83994 4.88013 4.99070 5.00056 5.04818 5.10956 5.15232 5.26983 5.32489 5.48795 5.51651 5.53666 5.58158 5.79857 6.25715 6.33902 6.57425 6.64790 6.68676 6.71329 6.83825 7.23236 7.36296 8.89065 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012360 B = 0.002437 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.793718 B =11485.209725 C =13153.466223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.338 6.338 4 C 0.059 3.941 5 C -0.164 4.164 6 C -0.162 4.162 7 C 0.177 3.823 8 N -0.743 5.743 9 C 0.113 3.887 10 C 0.501 3.499 11 O -0.579 6.579 12 N -0.588 5.588 13 C 0.222 3.778 14 C -0.532 4.532 15 H 0.030 0.970 16 C 0.007 3.993 17 N -0.949 5.949 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.225 1.225 22 C 0.108 3.892 23 C -0.038 4.038 24 C 0.245 3.755 25 N -0.490 5.490 26 C -0.131 4.131 27 C -0.107 4.107 28 C -0.115 4.115 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.075 0.925 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 -4.410 -11.231 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.027 4.027 3 O -0.254 6.254 4 C 0.013 3.987 5 C -0.183 4.183 6 C -0.185 4.185 7 C 0.075 3.925 8 N -0.378 5.378 9 C -0.015 4.015 10 C 0.289 3.711 11 O -0.459 6.459 12 N -0.318 5.318 13 C 0.100 3.900 14 C -0.571 4.571 15 H 0.048 0.952 16 C -0.191 4.191 17 N -0.589 5.589 18 Si 0.767 3.233 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.147 1.147 22 C -0.017 4.017 23 C -0.079 4.079 24 C -0.073 4.073 25 N -0.168 5.168 26 C -0.136 4.136 27 C -0.163 4.163 28 C -0.134 4.134 29 H 0.115 0.885 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.242 0.758 37 H 0.118 0.882 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.093 0.907 47 H 0.098 0.902 48 H 0.074 0.926 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -22.854 -5.465 -11.136 26.004 hybrid contribution 1.372 0.975 0.348 1.719 sum -21.482 -4.490 -10.788 24.455 Atomic orbital electron populations 1.21792 0.91842 1.03939 1.03031 1.22948 0.96615 0.81330 1.01848 1.86025 1.18959 1.30548 1.89821 1.18866 0.82594 0.94263 1.03011 1.21174 0.93393 0.98482 1.05241 1.20671 0.95182 0.95375 1.07254 1.17706 0.83070 0.93885 0.97853 1.44528 1.01729 1.08507 1.83083 1.21241 0.85148 0.89932 1.05167 1.21026 0.88336 0.85907 0.75803 1.90662 1.85077 1.18582 1.51557 1.47759 1.06390 1.06385 1.71296 1.19453 0.79074 0.96404 0.95104 1.21602 0.97516 1.45174 0.92822 0.95211 1.25872 1.00147 0.94666 0.98383 1.70065 1.18667 1.48688 1.21510 0.85771 0.77650 0.79498 0.80361 1.20505 1.21159 1.14743 1.21619 1.04525 0.79854 0.95673 1.19866 1.07415 0.81265 0.99371 1.29155 0.91472 0.94863 0.91778 1.81273 1.11302 1.14332 1.09932 1.19341 0.92235 0.95196 1.06828 1.20637 1.00693 0.92327 1.02690 1.20158 0.93734 0.95359 1.04156 0.88460 0.92058 0.91910 0.91686 0.91461 0.83812 0.83841 0.75817 0.88162 0.85998 0.91884 0.95486 0.92576 0.89428 0.87642 0.84272 0.85238 0.90654 0.90243 0.92647 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.65 5.46 71.98 0.39 1.04 16 3 O -0.34 -7.05 10.14 -93.63 -0.95 -8.00 16 4 C 0.06 1.29 6.69 22.49 0.15 1.44 16 5 C -0.16 -3.15 9.03 22.35 0.20 -2.95 16 6 C -0.16 -3.22 9.31 22.39 0.21 -3.01 16 7 C 0.18 4.12 6.64 38.14 0.25 4.37 16 8 N -0.74 -18.47 5.61 -342.98 -1.92 -20.39 16 9 C 0.11 2.43 3.95 85.63 0.34 2.77 16 10 C 0.50 15.98 7.74 87.66 0.68 16.66 16 11 O -0.58 -24.39 15.25 -3.04 -0.05 -24.44 16 12 N -0.59 -18.16 2.46 -826.14 -2.03 -20.19 16 13 C 0.22 8.98 4.23 85.63 0.36 9.34 16 14 C -0.53 -28.40 9.94 25.60 0.25 -28.14 16 15 H 0.03 1.80 8.06 -2.91 -0.02 1.78 16 16 C 0.01 0.38 5.47 84.65 0.46 0.85 16 17 N -0.95 -57.85 13.96 21.45 0.30 -57.55 16 18 Si 0.94 41.13 27.47 68.60 1.88 43.01 16 19 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.22 -8.26 6.54 99.48 0.65 -7.61 16 22 C 0.11 2.18 5.17 86.38 0.45 2.63 16 23 C -0.04 -0.50 6.03 28.79 0.17 -0.32 16 24 C 0.24 4.42 15.43 89.44 1.38 5.80 16 25 N -0.49 -12.22 18.54 20.00 0.37 -11.85 16 26 C -0.13 -3.03 5.90 -19.75 -0.12 -3.14 16 27 C -0.11 -2.19 9.57 71.24 0.68 -1.50 16 28 C -0.11 -2.57 9.64 22.35 0.22 -2.36 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 33 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 34 H 0.14 2.07 6.29 -2.91 -0.02 2.05 16 35 H 0.14 2.16 6.73 -2.91 -0.02 2.14 16 36 H 0.40 11.50 5.43 -92.71 -0.50 11.00 16 37 H 0.10 1.91 7.21 -2.39 -0.02 1.89 16 38 H 0.12 1.68 7.00 -2.38 -0.02 1.66 16 39 H 0.06 2.22 7.13 -2.39 -0.02 2.20 16 40 H 0.03 1.19 6.85 -2.38 -0.02 1.17 16 41 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 42 H 0.09 2.04 8.07 -2.38 -0.02 2.03 16 43 H 0.11 1.62 6.44 -2.39 -0.02 1.60 16 44 H 0.14 1.05 7.22 -2.39 -0.02 1.04 16 45 H 0.13 1.50 8.14 -2.38 -0.02 1.48 16 46 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.08 1.39 8.09 -2.39 -0.02 1.37 16 48 H 0.05 1.26 6.54 -2.39 -0.02 1.25 16 49 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -78.04 408.07 4.85 -73.20 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.42 Total: 23.50 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.82 Total: 2.72 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.28 Total: -109.99 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -1.00 Total: -32.44 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.01 kcal Total: -78.04 4.85 -73.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125345795.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.990 kcal (2) G-P(sol) polarization free energy of solvation -78.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds