Wall clock time and date at job start Wed Apr 1 2020 03:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46901 * 109.47087 * 2 1 4 4 C 1.46902 * 111.00189 * 300.02938 * 3 2 1 5 5 C 1.52997 * 109.47261 * 288.36491 * 4 3 2 6 6 C 1.46897 * 110.99732 * 63.99042 * 3 2 1 7 7 C 1.52992 * 109.47401 * 66.04011 * 6 3 2 8 8 O 1.42898 * 109.47074 * 65.00237 * 7 6 3 9 9 C 1.35716 * 117.00086 * 179.97438 * 8 7 6 10 10 C 1.39005 * 119.90866 * 0.25247 * 9 8 7 11 11 C 1.37685 * 120.10015 * 180.20899 * 10 9 8 12 12 C 1.39803 * 119.90051 * 359.51797 * 11 10 9 13 13 C 1.47489 * 120.09274 * 180.27775 * 12 11 10 14 14 O 1.21626 * 120.00017 * 317.65724 * 13 12 11 15 15 N 1.34777 * 120.00273 * 137.65704 * 13 12 11 16 16 C 1.36901 * 119.99740 * 2.04642 * 15 13 12 17 17 H 1.08000 * 120.00391 * 310.59449 * 16 15 13 18 18 C 1.39028 * 119.99684 * 130.59348 * 16 15 13 19 19 N 1.31385 * 119.99561 * 169.97428 * 18 16 15 20 20 Si 1.86795 * 120.00388 * 349.97590 * 18 16 15 21 21 H 1.48504 * 109.47197 * 94.83137 * 20 18 16 22 22 H 1.48499 * 109.47440 * 214.83513 * 20 18 16 23 23 H 1.48500 * 109.46866 * 334.83728 * 20 18 16 24 24 C 1.46500 * 120.00249 * 182.04539 * 15 13 12 25 25 C 1.47206 * 109.46672 * 84.64007 * 24 15 13 26 26 N 9.52797 * 121.46159 * 294.29839 * 7 1 2 27 27 C 1.39793 * 119.81118 * 0.24869 * 12 11 10 28 28 C 1.37685 * 119.90589 * 0.02562 * 27 12 11 29 29 H 1.09003 * 109.47213 * 65.95989 * 1 2 3 30 30 H 1.08999 * 109.47295 * 185.96469 * 1 2 3 31 31 H 1.08998 * 109.46970 * 305.96410 * 1 2 3 32 32 H 1.08999 * 109.46751 * 240.00228 * 2 1 3 33 33 H 1.09002 * 109.46776 * 120.00472 * 2 1 3 34 34 H 1.08998 * 109.46462 * 48.36322 * 4 3 2 35 35 H 1.09002 * 109.46620 * 168.36173 * 4 3 2 36 36 H 1.09002 * 109.47346 * 63.21164 * 5 4 3 37 37 H 1.09003 * 109.47124 * 183.21305 * 5 4 3 38 38 H 1.09000 * 109.46886 * 303.21604 * 5 4 3 39 39 H 1.09007 * 109.46984 * 306.03820 * 6 3 2 40 40 H 1.09001 * 109.47001 * 186.04778 * 6 3 2 41 41 H 1.08995 * 109.47743 * 305.00156 * 7 6 3 42 42 H 1.09005 * 109.47216 * 184.99474 * 7 6 3 43 43 H 1.08005 * 119.95437 * 359.97438 * 10 9 8 44 44 H 1.07993 * 120.05371 * 179.79268 * 11 10 9 45 45 H 0.97000 * 119.99689 * 180.02562 * 19 18 16 46 46 H 1.08998 * 109.47357 * 204.63635 * 24 15 13 47 47 H 1.08997 * 109.47267 * 324.63789 * 24 15 13 48 48 H 1.08004 * 120.04693 * 180.02562 * 27 12 11 49 49 H 1.08007 * 119.95147 * 179.97438 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5481 2.1102 -1.1873 5 6 2.2836 1.5940 -2.4257 6 6 1.6282 2.0817 1.2325 7 6 2.3400 1.4439 2.4271 8 8 3.7490 1.6501 2.3077 9 6 4.5317 1.1431 3.2937 10 6 3.9526 0.4550 4.3536 11 6 4.7426 -0.0573 5.3582 12 6 6.1300 0.1066 5.3060 13 6 6.9807 -0.4457 6.3767 14 8 6.6404 -0.3396 7.5395 15 7 8.1352 -1.0682 6.0666 16 6 8.5390 -1.1510 4.7611 17 1 7.8502 -1.4945 4.0035 18 6 9.8358 -0.7927 4.4106 19 7 10.2864 -1.0548 3.2045 20 14 10.9374 0.0611 5.6541 21 1 11.7783 -0.9486 6.3461 22 1 11.8110 1.0368 4.9540 23 1 10.0988 0.7739 6.6511 24 6 8.9581 -1.6562 7.1265 25 6 8.4669 -3.0091 7.4354 26 7 8.0880 -4.0553 7.6714 27 6 6.7086 0.7950 4.2357 28 6 5.9107 1.3090 3.2383 29 1 -0.3634 0.4187 -0.9385 30 1 -0.3634 -1.0221 0.1068 31 1 -0.3633 0.6035 0.8318 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.4767 1.9509 -1.3084 35 1 1.7458 3.1751 -1.0649 36 1 2.0406 0.5428 -2.5808 37 1 1.9756 2.1707 -3.2979 38 1 3.3586 1.7008 -2.2806 39 1 0.5494 2.0025 1.3677 40 1 1.9090 3.1325 1.1608 41 1 2.1298 0.3746 2.4469 42 1 1.9829 1.9016 3.3497 43 1 2.8810 0.3253 4.3912 44 1 4.2916 -0.5888 6.1830 45 1 11.1912 -0.8052 2.9601 46 1 9.9941 -1.7132 6.7928 47 1 8.8979 -1.0349 8.0201 48 1 7.7801 0.9236 4.1913 49 1 6.3570 1.8414 2.4112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126560678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:45 Heat of formation + Delta-G solvation = 4.552996 kcal Electronic energy + Delta-G solvation = -29937.160801 eV Core-core repulsion = 25865.822932 eV Total energy + Delta-G solvation = -4071.337869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.06053 -39.28162 -38.42946 -36.63961 -35.87485 -34.86436 -32.15476 -32.09206 -31.24775 -30.56821 -29.84426 -27.85656 -27.41751 -25.10790 -24.63958 -23.18615 -22.44873 -21.47622 -19.90362 -19.47483 -18.56974 -17.96761 -17.18616 -16.82076 -16.26947 -16.00548 -15.63974 -15.19069 -15.06360 -14.71411 -14.50193 -14.15352 -13.98034 -13.74401 -13.56967 -13.36390 -13.14247 -13.00529 -12.73324 -12.65587 -12.55581 -12.47703 -12.35179 -12.18936 -12.03091 -11.87308 -11.67585 -11.62305 -11.45597 -11.38816 -11.15698 -11.05664 -10.79294 -10.60842 -10.43706 -10.31401 -10.17498 -9.46201 -8.91325 -8.49878 -8.47288 -8.05872 -7.69963 -6.59099 -4.39175 1.65540 1.90558 2.91552 3.08909 3.09804 3.14627 3.34416 3.38074 3.54546 3.63503 3.96068 4.26065 4.46446 4.60535 4.61466 4.66880 4.78676 4.91910 4.91980 4.99389 5.05024 5.09083 5.12022 5.26382 5.26707 5.30555 5.31477 5.41021 5.60007 5.61997 5.65625 5.73463 5.74342 5.78020 5.87432 5.89174 5.92682 5.96316 6.10001 6.23515 6.53125 6.69584 6.78600 6.83667 6.86463 7.08973 7.12776 7.28107 7.75541 7.84388 8.11854 8.14210 8.73466 9.04195 9.37287 10.48848 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014480 B = 0.002546 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.241385 B =10993.797729 C =11784.197986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.042 3.958 3 N -0.527 5.527 4 C 0.046 3.954 5 C -0.148 4.148 6 C 0.052 3.948 7 C 0.063 3.937 8 O -0.298 6.298 9 C 0.140 3.860 10 C -0.231 4.231 11 C -0.039 4.039 12 C -0.138 4.138 13 C 0.544 3.456 14 O -0.581 6.581 15 N -0.462 5.462 16 C -0.350 4.350 17 H 0.108 0.892 18 C 0.071 3.929 19 N -0.852 5.852 20 Si 0.861 3.139 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.252 1.252 24 C 0.188 3.812 25 C 0.216 3.784 26 N -0.452 5.452 27 C -0.006 4.006 28 C -0.166 4.166 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.037 0.963 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.279 0.721 46 H 0.109 0.891 47 H 0.114 0.886 48 H 0.154 0.846 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 8.414 -7.723 18.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.081 4.081 5 C -0.205 4.205 6 C -0.076 4.076 7 C -0.013 4.013 8 O -0.211 6.211 9 C 0.095 3.905 10 C -0.250 4.250 11 C -0.059 4.059 12 C -0.141 4.141 13 C 0.335 3.665 14 O -0.464 6.464 15 N -0.184 5.184 16 C -0.477 4.477 17 H 0.126 0.874 18 C -0.138 4.138 19 N -0.486 5.486 20 Si 0.686 3.314 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.175 1.175 24 C 0.062 3.938 25 C -0.103 4.103 26 N -0.131 5.131 27 C -0.025 4.025 28 C -0.185 4.185 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.090 0.910 46 H 0.127 0.873 47 H 0.131 0.869 48 H 0.172 0.828 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.640 7.022 -7.150 17.742 hybrid contribution -0.173 0.462 0.401 0.636 sum -14.813 7.485 -6.749 17.916 Atomic orbital electron populations 1.22450 0.98520 1.02514 1.01871 1.22265 0.92468 0.90425 1.03439 1.62206 1.59408 1.02050 1.01430 1.22136 0.97205 0.98232 0.90558 1.21761 1.01824 1.00862 0.96083 1.22214 0.96962 0.99245 0.89176 1.22795 0.80154 1.00614 0.97730 1.86111 1.17382 1.73379 1.44226 1.19229 0.90992 0.93036 0.87289 1.20924 0.99655 1.07115 0.97293 1.20849 0.92161 0.96072 0.96774 1.19587 0.93047 1.04155 0.97350 1.18432 0.82280 0.78066 0.87764 1.90679 1.74003 1.61312 1.20387 1.43485 1.20154 1.48084 1.06650 1.19097 0.99577 1.47172 0.81845 0.87431 1.25503 0.97221 0.95043 0.96033 1.69647 1.17729 1.42091 1.19112 0.87082 0.81310 0.80821 0.82177 1.19355 1.20464 1.17503 1.19347 0.96009 0.83529 0.94901 1.30012 0.93095 0.95098 0.92084 1.81076 1.09142 1.12830 1.10027 1.21560 1.01110 0.90385 0.89423 1.20391 0.89861 1.06425 1.01829 0.92371 0.91913 0.92486 0.90239 0.90382 0.94458 0.91001 0.92866 0.92560 0.91483 0.92520 0.89633 0.91975 0.91843 0.86121 0.85967 0.91033 0.87327 0.86875 0.82828 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.37 9.23 37.16 0.34 -1.03 16 2 C 0.04 0.37 5.72 -3.82 -0.02 0.35 16 3 N -0.53 -5.14 4.62 -234.63 -1.08 -6.23 16 4 C 0.05 0.37 5.52 -3.82 -0.02 0.35 16 5 C -0.15 -1.17 9.89 37.16 0.37 -0.81 16 6 C 0.05 0.46 5.16 -3.83 -0.02 0.44 16 7 C 0.06 0.67 4.79 37.15 0.18 0.84 16 8 O -0.30 -4.31 10.07 -18.85 -0.19 -4.50 16 9 C 0.14 2.26 6.70 -39.01 -0.26 2.00 16 10 C -0.23 -3.59 9.01 -39.50 -0.36 -3.95 16 11 C -0.04 -0.71 9.65 -39.20 -0.38 -1.08 16 12 C -0.14 -2.80 5.28 -104.96 -0.55 -3.35 16 13 C 0.54 12.12 7.21 -12.49 -0.09 12.03 16 14 O -0.58 -13.80 16.61 5.25 0.09 -13.71 16 15 N -0.46 -10.23 1.98 -119.13 -0.24 -10.47 16 16 C -0.35 -8.24 6.61 -15.00 -0.10 -8.34 16 17 H 0.11 2.80 7.49 -52.49 -0.39 2.41 16 18 C 0.07 1.67 5.16 -17.45 -0.09 1.58 16 19 N -0.85 -21.43 13.96 55.50 0.77 -20.65 16 20 Si 0.86 17.47 24.88 -169.99 -4.23 13.24 16 21 H -0.27 -5.17 6.89 56.52 0.39 -4.78 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.25 -5.00 7.03 56.52 0.40 -4.61 16 24 C 0.19 3.74 4.30 -6.83 -0.03 3.71 16 25 C 0.22 4.53 15.72 -20.71 -0.33 4.21 16 26 N -0.45 -10.02 18.55 42.21 0.78 -9.24 16 27 C -0.01 -0.12 8.09 -39.20 -0.32 -0.44 16 28 C -0.17 -2.89 9.97 -39.50 -0.39 -3.29 16 29 H 0.06 0.39 6.49 -51.93 -0.34 0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 6.11 -51.93 -0.32 0.07 16 32 H 0.08 0.71 6.76 -51.93 -0.35 0.36 16 33 H 0.08 0.77 6.20 -51.93 -0.32 0.44 16 34 H 0.04 0.27 5.89 -51.93 -0.31 -0.04 16 35 H 0.07 0.56 7.82 -51.93 -0.41 0.15 16 36 H 0.05 0.42 6.89 -51.93 -0.36 0.06 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.40 6.03 -51.93 -0.31 0.09 16 40 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 41 H 0.06 0.64 5.76 -51.93 -0.30 0.34 16 42 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 43 H 0.12 1.52 6.28 -52.48 -0.33 1.19 16 44 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.28 6.56 8.31 -40.82 -0.34 6.22 16 46 H 0.11 2.06 4.30 -51.93 -0.22 1.84 16 47 H 0.11 2.04 7.56 -51.93 -0.39 1.64 16 48 H 0.15 3.12 6.27 -52.48 -0.33 2.79 16 49 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 393.92 15.07 5.94 5.94 Total: -1.00 -28.47 393.92 -6.97 -35.44 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.75 Total: 6.94 kcal Atomic # 6 Polarization: 5.31 SS G_CDS: -2.07 Total: 3.24 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.24 Total: -46.59 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.10 Total: -18.21 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -4.23 Total: 13.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.47 -6.97 -35.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126560678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.994 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds