Wall clock time and date at job start Wed Apr 1 2020 04:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47235 * 59.99855 * 9 7 5 11 11 H 1.48500 * 109.47168 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47142 * 299.99797 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46499 * 109.46992 * 179.97438 * 15 13 3 17 17 C 1.39712 * 120.00096 * 179.97438 * 16 15 13 18 18 C 1.39030 * 119.99604 * 0.02562 * 17 16 15 19 19 C 1.38269 * 120.33720 * 180.29007 * 18 17 16 20 20 C 1.37897 * 120.08324 * 359.72137 * 19 18 17 21 21 C 1.39642 * 119.96088 * 359.80836 * 20 19 18 22 22 C 1.38756 * 120.00225 * 179.72836 * 17 16 15 23 23 C 1.47854 * 119.06809 * 181.11055 * 21 20 19 24 24 O 1.21551 * 120.34196 * 192.91881 * 23 21 20 25 25 N 1.34668 * 119.31247 * 12.94052 * 23 21 20 26 26 C 1.46501 * 119.48989 * 187.87951 * 25 23 21 27 27 C 1.46126 * 121.01838 * 7.90548 * 25 23 21 28 28 C 1.50628 * 120.60093 * 179.17483 * 20 19 18 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 34 34 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 35 35 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 36 36 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 38 38 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 39 39 H 0.97000 * 120.00420 * 0.02562 * 16 15 13 40 40 H 1.07997 * 119.82755 * 0.26125 * 18 17 16 41 41 H 1.08001 * 119.95400 * 179.74767 * 19 18 17 42 42 H 1.07995 * 120.21521 * 0.11791 * 22 17 16 43 43 H 1.08998 * 109.47574 * 270.02205 * 26 25 23 44 44 H 1.09007 * 109.47235 * 30.02481 * 26 25 23 45 45 H 1.08997 * 109.47044 * 150.02096 * 26 25 23 46 46 H 1.09000 * 109.17811 * 199.30619 * 27 25 23 47 47 H 1.09009 * 109.18036 * 80.07728 * 27 25 23 48 48 H 1.08991 * 109.36813 * 267.59124 * 28 20 19 49 49 H 1.09004 * 109.35914 * 27.32083 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.1403 0.6387 -3.5947 11 1 6.1604 2.7947 -4.7040 12 1 6.8411 2.6188 -2.3829 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3100 2.2033 3.5858 17 6 2.1547 1.7643 4.9030 18 6 1.6991 0.4756 5.1570 19 6 1.5371 0.0358 6.4579 20 6 1.8329 0.8734 7.5126 21 6 2.3003 2.1661 7.2667 22 6 2.4610 2.6123 5.9577 23 6 2.6349 3.0390 8.4122 24 8 2.8165 4.2292 8.2447 25 7 2.7368 2.5018 9.6428 26 6 2.8953 3.3820 10.8031 27 6 2.6921 1.0544 9.8386 28 6 1.6432 0.4128 8.9341 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5818 1.6876 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 3.6747 3.5148 -4.4447 37 1 0.9443 1.0114 2.5302 38 1 2.6227 0.4186 2.5299 39 1 2.6275 3.1026 3.4086 40 1 1.4701 -0.1852 4.3340 41 1 1.1789 -0.9652 6.6481 42 1 2.8179 3.6131 5.7644 43 1 3.9559 3.5546 10.9861 44 1 2.4007 4.3335 10.6077 45 1 2.4472 2.9128 11.6790 46 1 2.4465 0.8412 10.8790 47 1 3.6702 0.6316 9.6087 48 1 0.6483 0.6971 9.2765 49 1 1.7446 -0.6716 8.9792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150796412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:48 Heat of formation + Delta-G solvation = -37.836477 kcal Electronic energy + Delta-G solvation = -29560.551588 eV Core-core repulsion = 25487.375574 eV Total energy + Delta-G solvation = -4073.176014 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.89455 -39.52765 -38.59186 -36.75595 -35.64651 -35.06860 -32.88956 -32.13600 -31.38275 -30.21736 -29.38112 -27.63028 -27.37687 -25.98425 -23.80413 -23.37798 -23.10722 -22.23593 -21.72001 -18.94878 -18.72828 -17.93233 -16.95422 -16.72903 -16.48284 -16.32641 -15.96103 -15.39987 -15.37184 -15.17548 -14.83126 -14.42033 -14.14470 -13.90777 -13.76837 -13.62168 -13.49911 -13.40043 -13.29571 -12.98914 -12.80119 -12.66066 -12.40807 -12.08770 -12.07124 -11.92653 -11.64680 -11.45520 -11.28092 -11.25649 -10.98389 -10.82777 -10.58972 -10.19594 -10.09261 -10.00281 -9.72425 -9.16676 -9.13910 -8.94059 -8.47942 -7.81338 -7.41381 -6.09212 -4.14437 0.78280 1.39435 2.65187 2.73278 3.19035 3.26340 3.29101 3.33925 3.37865 3.78173 3.90387 4.26523 4.36604 4.40611 4.47004 4.74472 4.83555 4.86905 4.93000 5.02711 5.10331 5.16389 5.18622 5.19977 5.25436 5.31326 5.40362 5.43424 5.48035 5.52689 5.54962 5.61792 5.69621 5.78899 5.93762 6.07834 6.11429 6.14577 6.22660 6.34758 6.39952 6.60194 6.92984 7.04616 7.25078 7.35523 7.42978 7.76127 7.86139 7.93742 8.16419 8.26707 8.77784 8.93513 9.50728 10.98877 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017308 B = 0.002096 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.324702 B =13357.574877 C =14206.470794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.591 5.591 4 C 0.247 3.753 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.500 3.500 14 O -0.537 6.537 15 C 0.103 3.897 16 N -0.728 5.728 17 C 0.219 3.781 18 C -0.176 4.176 19 C -0.073 4.073 20 C -0.122 4.122 21 C -0.088 4.088 22 C -0.131 4.131 23 C 0.563 3.437 24 O -0.531 6.531 25 N -0.618 5.618 26 C 0.086 3.914 27 C 0.117 3.883 28 C -0.089 4.089 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.044 0.956 36 H 0.264 0.736 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.414 0.586 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.134 0.866 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.612 -11.432 26.326 29.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.285 3.715 14 O -0.414 6.414 15 C -0.025 4.025 16 N -0.359 5.359 17 C 0.113 3.887 18 C -0.200 4.200 19 C -0.091 4.091 20 C -0.125 4.125 21 C -0.092 4.092 22 C -0.154 4.154 23 C 0.353 3.647 24 O -0.409 6.409 25 N -0.352 5.352 26 C -0.057 4.057 27 C -0.006 4.006 28 C -0.127 4.127 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.253 0.747 40 H 0.145 0.855 41 H 0.145 0.855 42 H 0.152 0.848 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.344 -10.199 25.860 28.513 hybrid contribution 1.059 -0.007 -0.564 1.200 sum -5.286 -10.205 25.296 27.785 Atomic orbital electron populations 1.22232 0.96545 1.01626 1.02458 1.21482 0.93681 0.83960 1.02961 1.48227 1.63163 1.13345 1.07542 1.19315 0.96434 0.93665 0.77824 1.21365 0.96815 1.32217 1.06370 0.92508 1.24937 0.97924 0.94854 0.96369 1.69919 1.35750 1.33257 1.14315 0.86546 0.84679 0.78263 0.77862 1.20222 1.21137 1.20169 1.20148 0.79044 0.87103 0.85195 1.90678 1.45990 1.18030 1.86725 1.21215 1.01532 0.93671 0.86071 1.44546 1.72796 1.17637 1.00964 1.17726 0.93676 0.92815 0.84451 1.20828 1.06616 0.95046 0.97488 1.20597 0.98295 0.98973 0.91249 1.19580 1.04366 0.93457 0.95119 1.19293 1.03152 0.94008 0.92703 1.20586 1.04522 1.00326 0.90003 1.18302 0.76328 0.87294 0.82820 1.90775 1.49537 1.15999 1.84548 1.47518 1.73679 1.07242 1.06748 1.21681 1.01793 0.95163 0.87016 1.21405 0.99663 0.79306 1.00259 1.20665 0.99533 1.01070 0.91397 0.93035 0.91898 0.91946 0.89588 0.91657 0.94768 0.93815 0.92591 0.89721 0.89688 0.74704 0.85548 0.85541 0.84777 0.92638 0.90600 0.91142 0.89654 0.91487 0.90265 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.10 1.51 5.93 -4.05 -0.02 1.48 16 3 N -0.59 -11.78 2.46 -175.06 -0.43 -12.21 16 4 C 0.25 6.25 5.16 -5.19 -0.03 6.22 16 5 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.50 9.83 7.74 -10.98 -0.09 9.74 16 14 O -0.54 -12.96 15.25 5.56 0.08 -12.87 16 15 C 0.10 1.46 3.94 -5.19 -0.02 1.44 16 16 N -0.73 -10.66 5.70 -59.81 -0.34 -11.00 16 17 C 0.22 2.87 6.65 -83.78 -0.56 2.31 16 18 C -0.18 -1.89 9.31 -39.28 -0.37 -2.25 16 19 C -0.07 -0.65 9.70 -39.69 -0.39 -1.04 16 20 C -0.12 -1.18 5.69 -104.26 -0.59 -1.78 16 21 C -0.09 -1.11 5.79 -105.07 -0.61 -1.72 16 22 C -0.13 -1.80 9.48 -39.02 -0.37 -2.17 16 23 C 0.56 7.48 7.50 -12.37 -0.09 7.38 16 24 O -0.53 -8.89 16.18 5.32 0.09 -8.80 16 25 N -0.62 -5.86 3.19 -183.24 -0.58 -6.44 16 26 C 0.09 0.63 10.37 59.85 0.62 1.25 16 27 C 0.12 0.70 6.46 -4.43 -0.03 0.68 16 28 C -0.09 -0.55 6.04 -28.10 -0.17 -0.71 16 29 H 0.05 0.59 7.22 -51.93 -0.38 0.22 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 33 H 0.07 0.76 6.44 -51.93 -0.33 0.42 16 34 H 0.03 0.87 8.07 -51.93 -0.42 0.46 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 36 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 37 H 0.08 1.00 6.99 -51.93 -0.36 0.64 16 38 H 0.09 1.05 7.20 -51.93 -0.37 0.68 16 39 H 0.41 6.76 7.45 -40.82 -0.30 6.45 16 40 H 0.13 1.14 6.71 -52.49 -0.35 0.79 16 41 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 42 H 0.13 1.97 7.78 -52.49 -0.41 1.56 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.67 7.52 -51.93 -0.39 0.27 16 45 H 0.07 0.30 7.79 -51.93 -0.40 -0.10 16 46 H 0.09 0.28 7.73 -51.93 -0.40 -0.12 16 47 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 48 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.09 0.34 8.08 -51.93 -0.42 -0.07 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -35.46 401.11 -9.60 -45.07 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.43 Total: 3.31 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.75 Total: 5.76 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.62 Total: -55.20 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: 0.17 Total: -21.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.46 -9.60 -45.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150796412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.230 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds