Wall clock time and date at job start Wed Apr 1 2020 05:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46938 * 2 1 4 4 C 1.42899 * 113.99592 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.88915 * 21.84132 * 4 3 2 6 6 C 1.53954 * 113.66224 * 250.49572 * 4 3 2 7 7 C 1.53951 * 87.29563 * 220.70074 * 6 4 3 8 8 H 1.09000 * 113.66504 * 270.17538 * 7 6 4 9 9 N 1.46500 * 113.66182 * 139.20539 * 7 6 4 10 10 C 1.46495 * 120.00176 * 349.43742 * 9 7 6 11 11 S 1.65602 * 119.99887 * 169.43894 * 9 7 6 12 12 O 1.42103 * 104.27840 * 26.07064 * 11 9 7 13 13 O 1.42104 * 104.27615 * 153.92928 * 11 9 7 14 14 C 1.81405 * 104.44548 * 269.99948 * 11 9 7 15 15 C 1.53004 * 109.46650 * 180.02562 * 14 11 9 16 16 C 1.53004 * 109.46774 * 180.02562 * 15 14 11 17 17 C 1.50705 * 109.46986 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99951 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47288 * 59.99869 * 21 19 17 23 23 H 1.48503 * 109.47099 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47104 * 299.99568 * 21 19 17 25 25 C 1.52909 * 86.78292 * 24.73471 * 7 6 4 26 26 C 1.52908 * 121.14675 * 209.37857 * 25 7 6 27 27 C 1.53951 * 86.78629 * 209.37747 * 26 25 7 28 28 C 1.52912 * 121.13923 * 100.81375 * 25 7 6 29 29 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47329 * 299.99625 * 1 2 3 31 31 H 1.09004 * 109.47540 * 60.00002 * 1 2 3 32 32 H 1.09005 * 109.46625 * 240.00441 * 2 1 3 33 33 H 1.08996 * 109.47080 * 120.00381 * 2 1 3 34 34 H 1.09000 * 113.57913 * 106.10119 * 6 4 3 35 35 H 1.08999 * 113.57762 * 335.30669 * 6 4 3 36 36 H 1.09009 * 109.46861 * 275.23350 * 10 9 7 37 37 H 1.08993 * 109.47345 * 155.22967 * 10 9 7 38 38 H 1.08997 * 109.47130 * 35.22626 * 10 9 7 39 39 H 1.08997 * 109.46870 * 299.99949 * 14 11 9 40 40 H 1.08990 * 109.47153 * 60.00384 * 14 11 9 41 41 H 1.09002 * 109.46719 * 299.99262 * 15 14 11 42 42 H 1.08991 * 109.47772 * 59.99796 * 15 14 11 43 43 H 1.08997 * 109.46628 * 299.99491 * 16 15 14 44 44 H 1.08997 * 109.46935 * 59.99861 * 16 15 14 45 45 H 0.97005 * 119.99849 * 180.02562 * 20 19 17 46 46 H 1.09006 * 113.66032 * 323.85056 * 26 25 7 47 47 H 1.09003 * 113.66469 * 94.90045 * 26 25 7 48 48 H 1.08998 * 113.57539 * 270.12947 * 27 26 25 49 49 H 1.08997 * 113.64879 * 139.35091 * 27 26 25 50 50 H 1.09002 * 113.66161 * 265.09535 * 28 25 7 51 51 H 1.08992 * 113.66206 * 36.06268 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9268 0.5644 -0.3745 6 6 4.0102 1.9780 1.3284 7 6 4.9847 2.8245 0.4896 8 1 5.9181 2.3129 0.2546 9 7 5.1925 4.1759 1.0157 10 6 4.3342 4.6843 2.0885 11 16 6.3977 5.1288 0.3976 12 8 6.5849 4.6434 -0.9248 13 8 5.9506 6.4567 0.6342 14 6 7.8445 4.7517 1.4249 15 6 9.0387 5.5806 0.9476 16 6 10.2592 5.2621 1.8137 17 6 11.4357 6.0780 1.3432 18 1 11.3241 6.7557 0.5096 19 6 12.6544 5.9595 1.9769 20 7 12.7900 5.1347 2.9923 21 14 14.1124 6.9714 1.3943 22 1 13.7887 8.4163 1.5066 23 1 15.2967 6.6631 2.2355 24 1 14.4109 6.6396 -0.0220 25 6 3.9458 2.7549 -0.6302 26 6 4.3627 2.8079 -2.1004 27 6 2.9942 3.4572 -2.3753 28 6 3.0044 3.9272 -0.9094 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.5016 1.2057 1.9202 35 1 3.3049 2.5724 1.9093 36 1 3.4232 5.1008 1.6584 37 1 4.8636 5.4611 2.6401 38 1 4.0769 3.8694 2.7650 39 1 7.6255 4.9957 2.4644 40 1 8.0819 3.6911 1.3428 41 1 9.2578 5.3369 -0.0920 42 1 8.8011 6.6411 1.0300 43 1 10.0403 5.5054 2.8533 44 1 10.4966 4.2015 1.7308 45 1 13.6474 5.0515 3.4384 46 1 5.2074 3.4698 -2.2919 47 1 4.4806 1.8254 -2.5574 48 1 2.2066 2.7370 -2.5969 49 1 3.0347 4.2743 -3.0955 50 1 2.0370 3.8387 -0.4150 51 1 3.4667 4.9035 -0.7647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153752535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:49 Heat of formation + Delta-G solvation = -80.714575 kcal Electronic energy + Delta-G solvation = -29735.082945 eV Core-core repulsion = 25763.198797 eV Total energy + Delta-G solvation = -3971.884148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.07301 -37.52719 -36.90170 -36.00235 -35.70089 -34.66726 -33.37319 -32.18589 -31.12261 -27.81590 -27.18008 -25.70642 -24.71507 -24.08975 -23.53850 -23.01176 -20.94328 -20.53362 -19.06059 -18.18615 -17.78237 -16.89198 -16.70448 -16.32823 -16.03732 -15.80728 -15.61075 -15.20988 -14.88014 -14.50041 -14.17427 -13.90794 -13.68124 -13.38972 -13.03591 -12.86226 -12.70843 -12.57535 -12.35719 -12.26096 -12.14492 -11.91285 -11.90414 -11.82715 -11.75913 -11.62852 -11.54324 -11.28175 -11.19018 -11.05606 -10.90153 -10.87612 -10.65668 -10.44292 -10.33008 -10.22903 -9.95511 -9.56809 -9.44176 -9.20628 -8.80932 -8.41025 -6.06126 -4.09321 0.44867 2.71430 3.31795 3.35567 3.38754 3.39317 3.99957 4.12847 4.24356 4.33834 4.37089 4.41751 4.43019 4.71186 4.75586 4.80974 4.82259 4.88187 5.01856 5.03452 5.16286 5.18757 5.21819 5.29840 5.30441 5.40424 5.43517 5.49947 5.55236 5.59095 5.62919 5.74748 5.75662 5.79734 5.89192 5.90080 6.00302 6.03949 6.14133 6.24451 6.32727 6.44420 6.46316 6.60409 6.86608 6.99602 7.55973 7.66098 7.91684 8.32193 8.96640 9.55317 11.05014 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002346 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.411413 B =11933.386230 C =12221.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.089 3.911 5 H 0.091 0.909 6 C -0.158 4.158 7 C 0.145 3.855 8 H 0.111 0.889 9 N -0.991 5.991 10 C 0.091 3.909 11 S 2.595 3.405 12 O -0.953 6.953 13 O -0.959 6.959 14 C -0.611 4.611 15 C -0.105 4.105 16 C 0.031 3.969 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.112 4.112 26 C -0.132 4.132 27 C -0.138 4.138 28 C -0.099 4.099 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.262 0.738 46 H 0.110 0.890 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.073 0.927 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.831 -11.245 -4.079 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.285 6.285 4 C 0.031 3.969 5 H 0.109 0.891 6 C -0.197 4.197 7 C 0.038 3.962 8 H 0.129 0.871 9 N -0.826 5.826 10 C -0.055 4.055 11 S 2.692 3.308 12 O -0.943 6.943 13 O -0.950 6.950 14 C -0.742 4.742 15 C -0.145 4.145 16 C -0.007 4.007 17 C -0.565 4.565 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.114 4.114 26 C -0.169 4.169 27 C -0.176 4.176 28 C -0.136 4.136 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.072 0.928 46 H 0.128 0.872 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.092 0.908 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.963 -10.544 -4.658 27.496 hybrid contribution 1.354 -0.222 0.460 1.447 sum -23.609 -10.766 -4.198 26.285 Atomic orbital electron populations 1.21736 0.93878 1.02112 1.03092 1.22499 0.95518 0.84203 0.99941 1.87956 1.20174 1.25844 1.94507 1.23150 0.81291 0.96737 0.95757 0.89123 1.23859 0.98733 0.99627 0.97481 1.21826 0.97689 0.82292 0.94371 0.87082 1.57473 1.48130 1.26137 1.50863 1.21512 0.95252 0.99236 0.89453 1.05588 0.75514 0.73897 0.75803 1.93534 1.85968 1.80797 1.34008 1.93569 1.79557 1.35451 1.86403 1.30606 1.17305 1.10938 1.15393 1.21492 0.94039 0.97575 1.01357 1.19055 0.89907 0.97285 0.94464 1.21218 0.94860 1.24223 1.16201 0.92420 1.25023 0.98945 0.95484 0.94945 1.69952 1.25018 1.36748 1.21729 0.86608 0.81718 0.80672 0.78757 1.20108 1.21240 1.20105 1.23258 0.96863 0.95962 0.95280 1.22948 0.98607 1.01588 0.93754 1.22791 0.97712 1.00342 0.96721 1.22309 0.98741 0.96323 0.96228 0.91280 0.91898 0.91911 0.93480 0.93453 0.90450 0.87843 0.92415 0.90718 0.90931 0.85614 0.85590 0.91612 0.91695 0.96162 0.96160 0.92843 0.87161 0.91937 0.90486 0.91778 0.90820 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 10.28 37.16 0.38 -0.50 16 2 C 0.06 0.38 6.51 37.16 0.24 0.62 16 3 O -0.37 -3.37 9.55 -35.23 -0.34 -3.71 16 4 C 0.09 0.78 4.17 -26.28 -0.11 0.67 16 5 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 6 C -0.16 -1.30 6.86 -25.75 -0.18 -1.48 16 7 C 0.14 1.49 3.65 -67.48 -0.25 1.24 16 8 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 9 N -0.99 -11.31 2.52 -114.13 -0.29 -11.60 16 10 C 0.09 0.87 9.40 59.84 0.56 1.43 16 11 S 2.59 38.60 5.37 -107.50 -0.58 38.02 16 12 O -0.95 -15.87 15.40 -57.54 -0.89 -16.76 16 13 O -0.96 -16.97 16.98 -57.54 -0.98 -17.95 16 14 C -0.61 -9.53 6.18 37.16 0.23 -9.30 16 15 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 16 C 0.03 0.79 4.97 -27.88 -0.14 0.66 16 17 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.11 -1.17 1.07 -154.71 -0.17 -1.34 16 26 C -0.13 -1.49 7.83 -26.28 -0.21 -1.70 16 27 C -0.14 -1.48 8.08 -25.75 -0.21 -1.69 16 28 C -0.10 -1.11 6.84 -26.28 -0.18 -1.29 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.85 5.95 -51.93 -0.31 0.54 16 36 H 0.06 0.54 7.94 -51.92 -0.41 0.13 16 37 H 0.07 0.71 7.60 -51.93 -0.39 0.32 16 38 H 0.07 0.53 6.04 -51.93 -0.31 0.22 16 39 H 0.13 1.77 8.14 -51.93 -0.42 1.35 16 40 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.11 1.51 6.21 -51.93 -0.32 1.18 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 51 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -33.81 412.92 -10.96 -44.76 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -9.27 Total: -1.11 kcal Atomic # 6 Polarization: -28.06 SS G_CDS: -0.56 Total: -28.62 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.45 Total: -37.48 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -2.20 Total: -38.42 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 38.60 SS G_CDS: -0.58 Total: 38.02 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.81 -10.96 -44.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153752535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.950 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds