Wall clock time and date at job start Wed Apr 1 2020 05:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46938 * 2 1 4 4 C 1.42899 * 113.99592 * 180.02562 * 3 2 1 5 5 H 1.09002 * 112.88915 * 21.84132 * 4 3 2 6 6 C 1.53954 * 113.66224 * 250.49572 * 4 3 2 7 7 C 1.53951 * 87.29563 * 220.70074 * 6 4 3 8 8 H 1.09000 * 113.66504 * 270.17538 * 7 6 4 9 9 N 1.46500 * 113.66182 * 139.20539 * 7 6 4 10 10 C 1.46495 * 120.00176 * 349.43742 * 9 7 6 11 11 S 1.65602 * 119.99887 * 169.43894 * 9 7 6 12 12 O 1.42103 * 104.27840 * 26.07064 * 11 9 7 13 13 O 1.42104 * 104.27615 * 153.92928 * 11 9 7 14 14 C 1.81405 * 104.44548 * 269.99948 * 11 9 7 15 15 C 1.53004 * 109.46650 * 180.02562 * 14 11 9 16 16 C 1.53004 * 109.46774 * 180.02562 * 15 14 11 17 17 C 1.50705 * 109.46986 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99944 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99951 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99948 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47288 * 59.99869 * 21 19 17 23 23 H 1.48503 * 109.47099 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47104 * 299.99568 * 21 19 17 25 25 C 1.52909 * 86.78292 * 24.73471 * 7 6 4 26 26 C 1.52908 * 121.14675 * 209.37857 * 25 7 6 27 27 C 1.53951 * 86.78629 * 209.37747 * 26 25 7 28 28 C 1.52912 * 121.13923 * 100.81375 * 25 7 6 29 29 H 1.09004 * 109.47385 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47329 * 299.99625 * 1 2 3 31 31 H 1.09004 * 109.47540 * 60.00002 * 1 2 3 32 32 H 1.09005 * 109.46625 * 240.00441 * 2 1 3 33 33 H 1.08996 * 109.47080 * 120.00381 * 2 1 3 34 34 H 1.09000 * 113.57913 * 106.10119 * 6 4 3 35 35 H 1.08999 * 113.57762 * 335.30669 * 6 4 3 36 36 H 1.09009 * 109.46861 * 275.23350 * 10 9 7 37 37 H 1.08993 * 109.47345 * 155.22967 * 10 9 7 38 38 H 1.08997 * 109.47130 * 35.22626 * 10 9 7 39 39 H 1.08997 * 109.46870 * 299.99949 * 14 11 9 40 40 H 1.08990 * 109.47153 * 60.00384 * 14 11 9 41 41 H 1.09002 * 109.46719 * 299.99262 * 15 14 11 42 42 H 1.08991 * 109.47772 * 59.99796 * 15 14 11 43 43 H 1.08997 * 109.46628 * 299.99491 * 16 15 14 44 44 H 1.08997 * 109.46935 * 59.99861 * 16 15 14 45 45 H 0.97005 * 119.99849 * 180.02562 * 20 19 17 46 46 H 1.09006 * 113.66032 * 323.85056 * 26 25 7 47 47 H 1.09003 * 113.66469 * 94.90045 * 26 25 7 48 48 H 1.08998 * 113.57539 * 270.12947 * 27 26 25 49 49 H 1.08997 * 113.64879 * 139.35091 * 27 26 25 50 50 H 1.09002 * 113.66161 * 265.09535 * 28 25 7 51 51 H 1.08992 * 113.66206 * 36.06268 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9268 0.5644 -0.3745 6 6 4.0102 1.9780 1.3284 7 6 4.9847 2.8245 0.4896 8 1 5.9181 2.3129 0.2546 9 7 5.1925 4.1759 1.0157 10 6 4.3342 4.6843 2.0885 11 16 6.3977 5.1288 0.3976 12 8 6.5849 4.6434 -0.9248 13 8 5.9506 6.4567 0.6342 14 6 7.8445 4.7517 1.4249 15 6 9.0387 5.5806 0.9476 16 6 10.2592 5.2621 1.8137 17 6 11.4357 6.0780 1.3432 18 1 11.3241 6.7557 0.5096 19 6 12.6544 5.9595 1.9769 20 7 12.7900 5.1347 2.9923 21 14 14.1124 6.9714 1.3943 22 1 13.7887 8.4163 1.5066 23 1 15.2967 6.6631 2.2355 24 1 14.4109 6.6396 -0.0220 25 6 3.9458 2.7549 -0.6302 26 6 4.3627 2.8079 -2.1004 27 6 2.9942 3.4572 -2.3753 28 6 3.0044 3.9272 -0.9094 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 4.5016 1.2057 1.9202 35 1 3.3049 2.5724 1.9093 36 1 3.4232 5.1008 1.6584 37 1 4.8636 5.4611 2.6401 38 1 4.0769 3.8694 2.7650 39 1 7.6255 4.9957 2.4644 40 1 8.0819 3.6911 1.3428 41 1 9.2578 5.3369 -0.0920 42 1 8.8011 6.6411 1.0300 43 1 10.0403 5.5054 2.8533 44 1 10.4966 4.2015 1.7308 45 1 13.6474 5.0515 3.4384 46 1 5.2074 3.4698 -2.2919 47 1 4.4806 1.8254 -2.5574 48 1 2.2066 2.7370 -2.5969 49 1 3.0347 4.2743 -3.0955 50 1 2.0370 3.8387 -0.4150 51 1 3.4667 4.9035 -0.7647 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153752535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:48 Heat of formation + Delta-G solvation = -101.563912 kcal Electronic energy + Delta-G solvation = -29735.987040 eV Core-core repulsion = 25763.198797 eV Total energy + Delta-G solvation = -3972.788243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.84093 -38.24244 -38.11666 -37.01032 -36.86131 -36.48113 -34.18137 -34.12841 -31.64460 -29.66917 -27.98387 -26.58119 -25.67933 -25.46080 -24.64764 -23.53094 -22.36714 -21.67102 -20.11411 -19.04576 -18.83107 -18.57484 -17.69281 -17.44811 -17.13715 -16.74028 -16.51928 -16.47371 -16.02473 -15.99196 -15.42746 -14.71793 -14.51054 -14.40035 -14.09330 -14.05729 -13.87838 -13.57769 -13.49877 -13.36045 -13.27773 -13.11882 -12.99816 -12.97310 -12.90113 -12.74441 -12.65494 -12.52070 -12.41787 -12.23798 -12.16800 -11.89890 -11.83049 -11.77582 -11.51443 -11.39087 -11.19640 -11.06118 -10.94561 -10.58462 -10.21969 -9.76370 -8.23798 -6.35111 -0.76614 1.39300 1.41975 1.49934 1.66424 2.38889 2.76640 2.81235 3.09377 3.14224 3.40027 3.52922 3.56591 3.68926 3.76086 3.88322 3.92319 3.99936 4.06915 4.25843 4.30460 4.36537 4.44645 4.47497 4.57990 4.59157 4.61415 4.72132 4.73508 4.80999 4.86341 4.92212 4.96127 4.99333 5.01744 5.04069 5.07634 5.10441 5.12096 5.15442 5.31130 5.39177 5.43014 5.47463 5.57530 5.60512 5.73747 5.77472 6.17985 6.41735 6.79941 7.34119 8.87419 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.002346 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.411413 B =11933.386230 C =12221.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.382 6.382 4 C 0.095 3.905 5 H 0.107 0.893 6 C -0.146 4.146 7 C 0.130 3.870 8 H 0.119 0.881 9 N -0.981 5.981 10 C 0.081 3.919 11 S 2.616 3.384 12 O -0.972 6.972 13 O -0.989 6.989 14 C -0.612 4.612 15 C -0.105 4.105 16 C 0.032 3.968 17 C -0.554 4.554 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.115 4.115 26 C -0.137 4.137 27 C -0.135 4.135 28 C -0.100 4.100 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.058 0.942 50 H 0.076 0.924 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.717 -12.505 -3.895 28.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.301 6.301 4 C 0.036 3.964 5 H 0.125 0.875 6 C -0.185 4.185 7 C 0.024 3.976 8 H 0.136 0.864 9 N -0.818 5.818 10 C -0.063 4.063 11 S 2.713 3.287 12 O -0.962 6.962 13 O -0.980 6.980 14 C -0.742 4.742 15 C -0.144 4.144 16 C -0.006 4.006 17 C -0.592 4.592 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.193 1.193 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.117 4.117 26 C -0.175 4.175 27 C -0.172 4.172 28 C -0.138 4.138 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.162 0.838 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.020 0.980 44 H 0.022 0.978 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.077 0.923 50 H 0.094 0.906 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.847 -11.797 -4.478 28.762 hybrid contribution 1.538 0.122 0.394 1.593 sum -24.308 -11.675 -4.084 27.274 Atomic orbital electron populations 1.21747 0.93389 1.03053 1.02474 1.22671 0.95961 0.83273 1.00777 1.87937 1.20227 1.27372 1.94571 1.23140 0.81485 0.96210 0.95539 0.87520 1.23819 0.97862 0.99466 0.97322 1.22146 0.98527 0.81730 0.95182 0.86380 1.57159 1.46857 1.26495 1.51299 1.21754 0.94817 1.00407 0.89319 1.04726 0.75448 0.73367 0.75155 1.93512 1.86410 1.81006 1.35276 1.93526 1.80055 1.37652 1.86724 1.30575 1.15930 1.11185 1.16485 1.21297 0.94129 0.98444 1.00551 1.18949 0.91529 0.95816 0.94300 1.21705 0.96272 1.24752 1.16487 0.92224 1.25947 1.02027 0.96621 0.95000 1.70066 1.25917 1.38095 1.22792 0.85526 0.77985 0.79158 0.78577 1.19269 1.20519 1.19186 1.23333 0.96886 0.96775 0.94718 1.22887 0.97843 1.01683 0.95039 1.22788 0.97738 1.00348 0.96327 1.22235 0.98933 0.95828 0.96762 0.89593 0.92367 0.92653 0.92826 0.92380 0.88351 0.87625 0.92361 0.90752 0.88095 0.84107 0.83784 0.91570 0.91931 0.97984 0.97827 0.92589 0.89815 0.90653 0.89410 0.92302 0.90567 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.28 71.98 0.74 -0.70 16 2 C 0.05 0.55 6.51 71.98 0.47 1.02 16 3 O -0.38 -6.11 9.55 -148.98 -1.42 -7.54 16 4 C 0.09 1.41 4.17 30.89 0.13 1.54 16 5 H 0.11 1.25 7.90 -2.39 -0.02 1.23 16 6 C -0.15 -1.95 6.86 31.23 0.21 -1.74 16 7 C 0.13 2.43 3.65 45.28 0.17 2.59 16 8 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 9 N -0.98 -21.16 2.52 -515.00 -1.30 -22.46 16 10 C 0.08 1.42 9.40 127.77 1.20 2.63 16 11 S 2.62 77.18 5.37 -56.49 -0.30 76.88 16 12 O -0.97 -32.56 15.40 -127.65 -1.97 -34.53 16 13 O -0.99 -35.18 16.98 -127.65 -2.17 -37.35 16 14 C -0.61 -18.77 6.18 71.98 0.44 -18.33 16 15 C -0.11 -4.35 5.16 30.60 0.16 -4.19 16 16 C 0.03 1.68 4.97 29.85 0.15 1.83 16 17 C -0.55 -31.79 9.11 25.60 0.23 -31.56 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.14 5.46 84.65 0.46 0.60 16 20 N -0.93 -55.81 13.29 21.45 0.28 -55.52 16 21 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 C -0.12 -2.25 1.07 -52.31 -0.06 -2.31 16 26 C -0.14 -3.03 7.83 30.88 0.24 -2.79 16 27 C -0.13 -2.81 8.08 31.23 0.25 -2.56 16 28 C -0.10 -2.20 6.84 30.89 0.21 -1.98 16 29 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.39 5.95 -2.39 -0.01 1.38 16 36 H 0.06 1.03 7.94 -2.38 -0.02 1.01 16 37 H 0.07 1.32 7.60 -2.39 -0.02 1.30 16 38 H 0.10 1.19 6.04 -2.39 -0.01 1.18 16 39 H 0.14 3.86 8.14 -2.39 -0.02 3.84 16 40 H 0.14 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.27 14.96 8.31 -92.70 -0.77 14.19 16 46 H 0.08 2.33 6.21 -2.38 -0.01 2.31 16 47 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.08 1.60 7.65 -2.39 -0.02 1.58 16 51 H 0.06 1.52 7.76 -2.39 -0.02 1.50 16 Total: -1.00 -73.26 412.92 1.05 -72.22 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.88 Total: 17.90 kcal Atomic # 6 Polarization: -60.96 SS G_CDS: 5.01 Total: -55.95 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -1.02 Total: -77.99 kcal Atomic # 8 Polarization: -73.86 SS G_CDS: -5.56 Total: -79.41 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 77.18 SS G_CDS: -0.30 Total: 76.88 kcal Total: -73.26 1.05 -72.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153752535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.349 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds