Wall clock time and date at job start Wed Apr 1 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47054 * 2 1 4 4 C 1.46507 * 119.99829 * 269.99395 * 3 2 1 5 5 C 1.50697 * 109.47113 * 270.00671 * 4 3 2 6 6 H 1.07998 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99699 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47131 * 90.00753 * 9 7 5 11 11 H 1.48502 * 109.47089 * 210.00302 * 9 7 5 12 12 H 1.48498 * 109.47432 * 330.00268 * 9 7 5 13 13 C 1.34778 * 120.00351 * 90.00170 * 3 2 1 14 14 O 1.21278 * 120.00228 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99715 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46934 * 180.02562 * 15 13 3 17 17 C 1.47186 * 110.99986 * 67.11134 * 16 15 13 18 18 C 1.52985 * 108.72988 * 192.36266 * 17 16 15 19 19 N 1.46012 * 110.04217 * 309.71181 * 18 17 16 20 20 C 1.33718 * 122.92987 * 18.15481 * 19 18 17 21 21 O 1.21268 * 118.62487 * 178.31581 * 20 19 18 22 22 C 1.46902 * 110.99724 * 190.00027 * 16 15 13 23 23 H 1.08996 * 109.39087 * 306.38979 * 22 16 15 24 24 C 1.50706 * 109.38681 * 66.18351 * 22 16 15 25 25 C 1.38237 * 119.99761 * 220.00152 * 24 22 16 26 26 C 1.38235 * 119.99712 * 179.97438 * 25 24 22 27 27 C 1.38234 * 120.00220 * 359.94731 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.28719 * 27 26 25 29 29 C 1.38234 * 120.00191 * 39.97253 * 24 22 16 30 30 H 1.09004 * 109.47020 * 300.00222 * 1 2 3 31 31 H 1.09003 * 109.47254 * 59.99849 * 1 2 3 32 32 H 1.08997 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47330 * 239.99689 * 2 1 3 34 34 H 1.09004 * 109.46975 * 119.99424 * 2 1 3 35 35 H 1.09002 * 109.46911 * 30.00198 * 4 3 2 36 36 H 1.08998 * 109.46714 * 150.00275 * 4 3 2 37 37 H 0.96998 * 120.00235 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.46882 * 60.00269 * 15 13 3 39 39 H 1.08996 * 109.47240 * 300.00293 * 15 13 3 40 40 H 1.09000 * 109.59054 * 312.13901 * 17 16 15 41 41 H 1.08996 * 109.59307 * 72.43567 * 17 16 15 42 42 H 1.09001 * 109.37037 * 69.88149 * 18 17 16 43 43 H 1.08996 * 109.37314 * 189.53107 * 18 17 16 44 44 H 0.97000 * 118.53463 * 198.16109 * 19 18 17 45 45 H 1.08005 * 120.00088 * 359.96779 * 25 24 22 46 46 H 1.07999 * 119.99770 * 179.97438 * 26 25 24 47 47 H 1.08002 * 119.99744 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 49 49 H 1.07999 * 119.99990 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2307 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 5.3917 2.1840 -3.2569 9 14 3.0132 3.4358 -3.9288 10 1 3.1160 4.8560 -3.5070 11 1 3.4068 3.3135 -5.3554 12 1 1.6136 2.9693 -3.7596 13 6 2.2430 2.0167 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2067 3.5888 17 6 1.3652 3.3348 3.6419 18 6 1.9127 4.3884 4.6065 19 7 2.2808 3.7635 5.8738 20 6 2.4788 2.4476 6.0049 21 8 2.8126 2.0154 7.0876 22 6 2.3050 1.4821 4.8667 23 1 1.3571 0.9565 4.9817 24 6 3.4348 0.4848 4.8800 25 6 3.2421 -0.7705 5.4258 26 6 4.2783 -1.6855 5.4375 27 6 5.5067 -1.3455 4.9024 28 6 5.7008 -0.0885 4.3610 29 6 4.6635 0.8251 4.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 5.7178 2.5744 -4.0828 38 1 2.6212 0.4188 2.5302 39 1 0.9433 1.0126 2.5298 40 1 1.2587 3.7693 2.6479 41 1 0.3950 2.9834 3.9930 42 1 2.7919 4.8592 4.1667 43 1 1.1500 5.1463 4.7850 44 1 2.3863 4.3281 6.6554 45 1 2.2821 -1.0364 5.8432 46 1 4.1279 -2.6661 5.8643 47 1 6.3161 -2.0606 4.9112 48 1 6.6618 0.1787 3.9469 49 1 4.8140 1.8059 3.9194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156204630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:11 Heat of formation + Delta-G solvation = -17.524598 kcal Electronic energy + Delta-G solvation = -31602.420118 eV Core-core repulsion = 27530.124893 eV Total energy + Delta-G solvation = -4072.295225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.96973 -39.24092 -38.75609 -37.08170 -35.39576 -34.85376 -32.75026 -31.80902 -30.81299 -30.40929 -29.52365 -28.63027 -27.25956 -24.80140 -23.50458 -23.02350 -22.53377 -21.81999 -21.56710 -19.20997 -18.41207 -17.62891 -17.20956 -16.91664 -16.82295 -16.12106 -15.87460 -15.47764 -15.32449 -14.91065 -14.78998 -14.27052 -14.23777 -14.10498 -13.68159 -13.54221 -13.38636 -13.25282 -13.14459 -12.80962 -12.57733 -12.38400 -12.33193 -12.09272 -11.94616 -11.61578 -11.55257 -11.35404 -11.04957 -10.99609 -10.95379 -10.73311 -10.53002 -10.17355 -10.08316 -9.54647 -9.22634 -9.06285 -8.82300 -8.71420 -8.60047 -8.51572 -7.75256 -6.09359 -4.08057 1.32986 1.50782 2.46724 3.12188 3.23979 3.27057 3.32087 3.33644 3.37244 3.85524 3.94601 4.37907 4.41727 4.57691 4.68848 4.81031 4.90775 5.00041 5.05031 5.10338 5.15471 5.21895 5.23881 5.27707 5.30617 5.48590 5.50764 5.56724 5.64173 5.68542 5.71880 5.83162 5.91601 5.97925 6.09905 6.12896 6.32696 6.43586 6.48636 6.54735 6.62899 6.66107 6.77308 6.82911 6.91894 7.04856 7.13695 7.31230 7.59756 8.06979 8.20974 8.45949 8.91283 8.97121 9.50740 11.04093 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003585 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.538284 B = 7808.491210 C = 8589.324061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.219 3.781 5 C -0.527 4.527 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.875 3.125 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.512 3.488 14 O -0.523 6.523 15 C 0.035 3.965 16 N -0.504 5.504 17 C 0.032 3.968 18 C 0.117 3.883 19 N -0.717 5.717 20 C 0.534 3.466 21 O -0.545 6.545 22 C 0.112 3.888 23 H 0.081 0.919 24 C -0.076 4.076 25 C -0.100 4.100 26 C -0.127 4.127 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.080 4.080 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.039 0.961 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.400 0.600 45 H 0.118 0.882 46 H 0.120 0.880 47 H 0.120 0.880 48 H 0.123 0.877 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.246 -4.084 16.118 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.298 3.702 14 O -0.399 6.399 15 C -0.096 4.096 16 N -0.230 5.230 17 C -0.096 4.096 18 C -0.008 4.008 19 N -0.370 5.370 20 C 0.320 3.680 21 O -0.421 6.421 22 C 0.001 3.999 23 H 0.098 0.902 24 C -0.077 4.077 25 C -0.118 4.118 26 C -0.145 4.145 27 C -0.132 4.132 28 C -0.140 4.140 29 C -0.098 4.098 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.135 0.865 41 H 0.057 0.943 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.235 0.765 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.138 0.862 48 H 0.141 0.859 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.280 -3.583 16.236 19.041 hybrid contribution -1.204 0.377 -0.412 1.327 sum -10.484 -3.206 15.824 19.250 Atomic orbital electron populations 1.22230 0.96793 1.01630 1.02083 1.21451 0.93318 0.83947 1.03212 1.47934 1.64207 1.13365 1.06949 1.19630 0.97337 0.93261 0.79957 1.21323 0.95299 1.32868 1.07088 0.90725 1.24851 0.94939 0.95811 0.97348 1.69895 1.15117 1.44979 1.23541 0.86871 0.81439 0.81615 0.79843 1.19950 1.21126 1.19146 1.20000 0.78608 0.87054 0.84544 1.90642 1.44640 1.17895 1.86763 1.22130 1.00814 0.96486 0.90132 1.62092 1.51195 1.09041 1.00645 1.22665 0.92447 0.91927 1.02538 1.21523 1.01148 0.95168 0.82942 1.45581 1.70666 1.07615 1.13089 1.19802 0.76183 0.82900 0.89145 1.90754 1.47125 1.76960 1.27281 1.20587 0.98089 0.92879 0.88363 0.90181 1.19146 0.94195 0.93561 1.00779 1.20909 0.99251 0.92922 0.98742 1.21019 0.93354 0.99357 1.00735 1.21181 0.97235 0.96612 0.98212 1.21216 0.99274 0.93844 0.99699 1.21133 0.91734 1.00297 0.96655 0.93216 0.92148 0.91930 0.89597 0.91510 0.95359 0.94648 0.92586 0.87635 0.92096 0.86477 0.94270 0.89979 0.90148 0.76468 0.86379 0.86155 0.86207 0.85856 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 10.24 37.16 0.38 -1.57 16 2 C 0.10 1.53 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.32 2.46 -175.06 -0.43 -11.75 16 4 C 0.22 5.09 4.23 -5.19 -0.02 5.07 16 5 C -0.53 -14.73 9.94 -34.44 -0.34 -15.08 16 6 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 9 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 13 C 0.51 9.51 7.28 -10.99 -0.08 9.43 16 14 O -0.52 -11.58 14.10 5.56 0.08 -11.51 16 15 C 0.03 0.48 3.77 -4.97 -0.02 0.46 16 16 N -0.50 -6.74 3.45 -230.90 -0.80 -7.54 16 17 C 0.03 0.37 5.19 -3.67 -0.02 0.35 16 18 C 0.12 1.15 7.39 -4.31 -0.03 1.12 16 19 N -0.72 -7.78 5.52 -61.06 -0.34 -8.11 16 20 C 0.53 7.23 7.36 -11.67 -0.09 7.14 16 21 O -0.54 -9.01 17.27 5.57 0.10 -8.92 16 22 C 0.11 1.41 2.10 -70.23 -0.15 1.26 16 23 H 0.08 0.88 7.98 -51.93 -0.41 0.46 16 24 C -0.08 -1.02 3.27 -104.62 -0.34 -1.36 16 25 C -0.10 -1.20 9.67 -39.58 -0.38 -1.58 16 26 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.11 -1.35 10.05 -39.58 -0.40 -1.74 16 28 C -0.12 -1.63 10.05 -39.58 -0.40 -2.03 16 29 C -0.08 -1.17 9.00 -39.58 -0.36 -1.52 16 30 H 0.05 0.53 7.22 -51.93 -0.37 0.16 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 0.84 6.44 -51.93 -0.33 0.50 16 35 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 36 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.11 1.47 6.09 -51.93 -0.32 1.15 16 39 H 0.06 0.69 7.15 -51.93 -0.37 0.32 16 40 H 0.12 1.59 5.91 -51.93 -0.31 1.28 16 41 H 0.04 0.38 8.08 -51.93 -0.42 -0.03 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.40 3.67 8.84 -40.82 -0.36 3.31 16 45 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 48 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 49 H 0.13 2.12 7.71 -52.49 -0.40 1.71 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -35.14 394.56 -9.52 -44.66 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -7.42 Total: 5.71 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -2.76 Total: 1.61 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: -0.79 Total: -53.93 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: 0.17 Total: -20.42 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.14 -9.52 -44.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156204630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.138 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds