Wall clock time and date at job start Wed Apr 1 2020 04:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47054 * 2 1 4 4 C 1.46507 * 119.99829 * 269.99395 * 3 2 1 5 5 C 1.50697 * 109.47113 * 270.00671 * 4 3 2 6 6 H 1.07998 * 119.99991 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99699 * 180.02562 * 5 4 3 8 8 N 1.31512 * 119.99927 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99864 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47131 * 90.00753 * 9 7 5 11 11 H 1.48502 * 109.47089 * 210.00302 * 9 7 5 12 12 H 1.48498 * 109.47432 * 330.00268 * 9 7 5 13 13 C 1.34778 * 120.00351 * 90.00170 * 3 2 1 14 14 O 1.21278 * 120.00228 * 179.97438 * 13 3 2 15 15 C 1.50699 * 119.99715 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46934 * 180.02562 * 15 13 3 17 17 C 1.47186 * 110.99986 * 67.11134 * 16 15 13 18 18 C 1.52985 * 108.72988 * 192.36266 * 17 16 15 19 19 N 1.46012 * 110.04217 * 309.71181 * 18 17 16 20 20 C 1.33718 * 122.92987 * 18.15481 * 19 18 17 21 21 O 1.21268 * 118.62487 * 178.31581 * 20 19 18 22 22 C 1.46902 * 110.99724 * 190.00027 * 16 15 13 23 23 H 1.08996 * 109.39087 * 306.38979 * 22 16 15 24 24 C 1.50706 * 109.38681 * 66.18351 * 22 16 15 25 25 C 1.38237 * 119.99761 * 220.00152 * 24 22 16 26 26 C 1.38235 * 119.99712 * 179.97438 * 25 24 22 27 27 C 1.38234 * 120.00220 * 359.94731 * 26 25 24 28 28 C 1.38233 * 120.00037 * 0.28719 * 27 26 25 29 29 C 1.38234 * 120.00191 * 39.97253 * 24 22 16 30 30 H 1.09004 * 109.47020 * 300.00222 * 1 2 3 31 31 H 1.09003 * 109.47254 * 59.99849 * 1 2 3 32 32 H 1.08997 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47330 * 239.99689 * 2 1 3 34 34 H 1.09004 * 109.46975 * 119.99424 * 2 1 3 35 35 H 1.09002 * 109.46911 * 30.00198 * 4 3 2 36 36 H 1.08998 * 109.46714 * 150.00275 * 4 3 2 37 37 H 0.96998 * 120.00235 * 179.97438 * 8 7 5 38 38 H 1.09002 * 109.46882 * 60.00269 * 15 13 3 39 39 H 1.08996 * 109.47240 * 300.00293 * 15 13 3 40 40 H 1.09000 * 109.59054 * 312.13901 * 17 16 15 41 41 H 1.08996 * 109.59307 * 72.43567 * 17 16 15 42 42 H 1.09001 * 109.37037 * 69.88149 * 18 17 16 43 43 H 1.08996 * 109.37314 * 189.53107 * 18 17 16 44 44 H 0.97000 * 118.53463 * 198.16109 * 19 18 17 45 45 H 1.08005 * 120.00088 * 359.96779 * 25 24 22 46 46 H 1.07999 * 119.99770 * 179.97438 * 26 25 24 47 47 H 1.08002 * 119.99744 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.00395 * 179.72811 * 28 27 26 49 49 H 1.07999 * 119.99990 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3428 1.2307 -1.0957 7 6 4.1495 2.3903 -2.8775 8 7 5.3917 2.1840 -3.2569 9 14 3.0132 3.4358 -3.9288 10 1 3.1160 4.8560 -3.5070 11 1 3.4068 3.3135 -5.3554 12 1 1.6136 2.9693 -3.7596 13 6 2.2430 2.0167 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3091 2.2067 3.5888 17 6 1.3652 3.3348 3.6419 18 6 1.9127 4.3884 4.6065 19 7 2.2808 3.7635 5.8738 20 6 2.4788 2.4476 6.0049 21 8 2.8126 2.0154 7.0876 22 6 2.3050 1.4821 4.8667 23 1 1.3571 0.9565 4.9817 24 6 3.4348 0.4848 4.8800 25 6 3.2421 -0.7705 5.4258 26 6 4.2783 -1.6855 5.4375 27 6 5.5067 -1.3455 4.9024 28 6 5.7008 -0.0885 4.3610 29 6 4.6635 0.8251 4.3458 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5818 1.6876 -2.0285 36 1 2.0956 3.1410 -1.1385 37 1 5.7178 2.5744 -4.0828 38 1 2.6212 0.4188 2.5302 39 1 0.9433 1.0126 2.5298 40 1 1.2587 3.7693 2.6479 41 1 0.3950 2.9834 3.9930 42 1 2.7919 4.8592 4.1667 43 1 1.1500 5.1463 4.7850 44 1 2.3863 4.3281 6.6554 45 1 2.2821 -1.0364 5.8432 46 1 4.1279 -2.6661 5.8643 47 1 6.3161 -2.0606 4.9112 48 1 6.6618 0.1787 3.9469 49 1 4.8140 1.8059 3.9194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156204630.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:10 Heat of formation + Delta-G solvation = -42.628700 kcal Electronic energy + Delta-G solvation = -31603.508713 eV Core-core repulsion = 27530.124893 eV Total energy + Delta-G solvation = -4073.383821 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.99570 -40.63669 -39.71825 -38.19499 -36.86149 -35.84359 -34.81677 -32.84354 -31.87728 -31.76802 -30.63469 -29.77091 -28.75183 -25.93602 -24.69341 -24.31430 -23.59416 -23.23304 -22.54351 -20.16152 -19.81289 -19.07911 -18.67248 -18.22813 -17.87398 -17.41534 -17.02010 -16.66251 -16.49070 -16.19565 -15.93264 -15.77991 -15.32530 -15.22113 -14.77528 -14.67976 -14.55421 -14.47596 -14.26202 -14.20903 -13.83244 -13.76976 -13.43218 -13.32891 -13.16800 -13.04602 -12.66237 -12.55071 -12.45911 -12.33656 -12.02417 -11.96416 -11.91154 -11.85748 -11.70675 -11.15284 -10.80510 -10.54382 -10.13246 -9.79706 -9.68174 -9.53384 -9.32529 -8.31087 -6.35797 0.36939 0.52989 1.34099 1.37991 1.44123 1.46325 1.82754 2.12637 2.23056 2.32897 2.74733 2.90334 3.03644 3.43922 3.61254 3.66547 3.88475 3.90728 4.08590 4.11638 4.17556 4.19582 4.29490 4.32272 4.36079 4.44203 4.51873 4.63256 4.64825 4.72600 4.76904 4.84783 4.93600 4.96433 5.02437 5.03866 5.05324 5.16680 5.39911 5.48507 5.51343 5.53361 5.62634 5.66314 5.69657 5.78117 5.92320 6.10380 6.18553 6.27752 6.66229 6.76404 7.10305 7.25055 7.48847 8.86143 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011395 B = 0.003585 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.538284 B = 7808.491210 C = 8589.324061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -0.601 5.601 4 C 0.229 3.771 5 C -0.532 4.532 6 H 0.025 0.975 7 C 0.010 3.990 8 N -0.948 5.948 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.278 1.278 12 H -0.236 1.236 13 C 0.505 3.495 14 O -0.568 6.568 15 C 0.053 3.947 16 N -0.525 5.525 17 C 0.031 3.969 18 C 0.119 3.881 19 N -0.707 5.707 20 C 0.530 3.470 21 O -0.580 6.580 22 C 0.118 3.882 23 H 0.106 0.894 24 C -0.085 4.085 25 C -0.103 4.103 26 C -0.123 4.123 27 C -0.118 4.118 28 C -0.142 4.142 29 C -0.104 4.104 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.021 0.979 37 H 0.267 0.733 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.408 0.592 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.121 0.879 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.721 -5.217 17.160 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.025 4.025 3 N -0.333 5.333 4 C 0.107 3.893 5 C -0.571 4.571 6 H 0.043 0.957 7 C -0.188 4.188 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.201 1.201 11 H -0.204 1.204 12 H -0.159 1.159 13 C 0.293 3.707 14 O -0.448 6.448 15 C -0.078 4.078 16 N -0.252 5.252 17 C -0.096 4.096 18 C -0.004 4.004 19 N -0.358 5.358 20 C 0.316 3.684 21 O -0.460 6.460 22 C 0.007 3.993 23 H 0.124 0.876 24 C -0.086 4.086 25 C -0.122 4.122 26 C -0.141 4.141 27 C -0.136 4.136 28 C -0.160 4.160 29 C -0.123 4.123 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.136 0.864 44 H 0.245 0.755 45 H 0.160 0.840 46 H 0.170 0.830 47 H 0.161 0.839 48 H 0.139 0.861 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.793 -4.733 17.291 22.023 hybrid contribution 0.003 0.694 -0.679 0.971 sum -12.790 -4.039 16.612 21.351 Atomic orbital electron populations 1.22143 0.93667 1.03616 1.02220 1.21741 0.95787 0.81364 1.03590 1.48028 1.64407 1.15036 1.05798 1.19250 0.94476 0.93101 0.82492 1.21575 0.97184 1.31819 1.06528 0.95666 1.25857 0.96641 0.97259 0.98995 1.70062 1.17549 1.46735 1.24465 0.85716 0.80530 0.79043 0.77642 1.20116 1.20370 1.15925 1.20865 0.77290 0.86726 0.85855 1.90616 1.46476 1.20089 1.87570 1.21949 1.02793 0.95525 0.87490 1.61985 1.52629 1.09665 1.00881 1.22671 0.93446 0.91613 1.01881 1.21591 1.01457 0.95315 0.82082 1.45544 1.69428 1.07089 1.13754 1.20008 0.75794 0.83684 0.88882 1.90733 1.48999 1.77709 1.28535 1.20562 0.98854 0.92543 0.87320 0.87648 1.19301 0.93844 0.94576 1.00875 1.21243 1.00600 0.92258 0.98070 1.21431 0.92621 1.00511 0.99552 1.21479 0.98497 0.96105 0.97511 1.21366 0.99149 0.94854 1.00625 1.21017 0.93257 0.99570 0.98406 0.91806 0.93280 0.88960 0.91199 0.89306 0.93554 0.96069 0.92414 0.87702 0.88426 0.88588 0.91510 0.91846 0.86401 0.75488 0.83965 0.83026 0.83948 0.86052 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 10.24 71.98 0.74 -2.38 16 2 C 0.10 2.70 5.93 86.38 0.51 3.21 16 3 N -0.60 -22.88 2.46 -826.14 -2.03 -24.91 16 4 C 0.23 10.74 4.23 85.63 0.36 11.10 16 5 C -0.53 -30.96 9.94 25.60 0.25 -30.70 16 6 H 0.02 1.66 8.06 -2.91 -0.02 1.63 16 7 C 0.01 0.59 5.47 84.66 0.46 1.06 16 8 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 9 Si 0.95 43.81 27.47 68.60 1.88 45.69 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 13 C 0.50 18.81 7.28 87.66 0.64 19.45 16 14 O -0.57 -26.04 14.10 -3.02 -0.04 -26.08 16 15 C 0.05 1.38 3.77 85.56 0.32 1.70 16 16 N -0.53 -13.59 3.45 -884.43 -3.05 -16.64 16 17 C 0.03 0.67 5.19 86.24 0.45 1.12 16 18 C 0.12 2.21 7.39 86.47 0.64 2.84 16 19 N -0.71 -14.47 5.52 -466.09 -2.57 -17.04 16 20 C 0.53 13.76 7.36 87.68 0.65 14.41 16 21 O -0.58 -18.76 17.27 -2.99 -0.05 -18.81 16 22 C 0.12 2.78 2.10 43.29 0.09 2.87 16 23 H 0.11 1.93 7.98 -2.39 -0.02 1.91 16 24 C -0.09 -2.22 3.27 -19.86 -0.06 -2.28 16 25 C -0.10 -2.24 9.67 22.27 0.22 -2.03 16 26 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 27 C -0.12 -2.64 10.05 22.27 0.22 -2.42 16 28 C -0.14 -3.92 10.05 22.27 0.22 -3.70 16 29 C -0.10 -3.16 9.00 22.27 0.20 -2.96 16 30 H 0.06 1.09 7.22 -2.39 -0.02 1.07 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 34 H 0.09 2.04 6.44 -2.38 -0.02 2.03 16 35 H 0.05 2.01 7.13 -2.39 -0.02 1.99 16 36 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.11 2.79 6.09 -2.39 -0.01 2.77 16 39 H 0.10 1.83 7.15 -2.39 -0.02 1.82 16 40 H 0.10 2.56 5.91 -2.39 -0.01 2.54 16 41 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.41 7.01 8.84 -92.71 -0.82 6.19 16 45 H 0.14 2.35 8.04 -2.91 -0.02 2.33 16 46 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 47 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 48 H 0.12 3.21 8.06 -2.91 -0.02 3.18 16 49 H 0.10 3.65 7.71 -2.91 -0.02 3.63 16 Total: -1.00 -82.11 394.56 0.66 -81.45 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: 0.09 Total: 26.98 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: 6.14 Total: 9.05 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -7.35 Total: -118.28 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.09 Total: -44.89 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.69 kcal Total: -82.11 0.66 -81.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156204630.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.820 kcal (2) G-P(sol) polarization free energy of solvation -82.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds