Wall clock time and date at job start Wed Apr 1 2020 04:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47145 * 2 1 4 4 C 1.46496 * 119.99853 * 89.99679 * 3 2 1 5 5 C 1.50699 * 109.47388 * 269.72513 * 4 3 2 6 6 H 1.08000 * 119.99605 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00262 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00186 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99862 * 0.02562 * 7 5 4 10 10 H 1.48498 * 109.47634 * 89.99590 * 9 7 5 11 11 H 1.48505 * 109.47393 * 210.00184 * 9 7 5 12 12 H 1.48501 * 109.47023 * 329.99793 * 9 7 5 13 13 C 1.34776 * 119.99887 * 269.72419 * 3 2 1 14 14 O 1.21282 * 119.99670 * 180.27558 * 13 3 2 15 15 C 1.50696 * 120.00412 * 0.27696 * 13 3 2 16 16 N 1.46899 * 109.47623 * 180.02562 * 15 13 3 17 17 C 1.47186 * 111.00275 * 67.59688 * 16 15 13 18 18 C 1.52986 * 108.72965 * 54.36960 * 17 16 15 19 19 N 1.46003 * 110.04204 * 50.29168 * 18 17 16 20 20 C 1.33720 * 122.92756 * 341.83996 * 19 18 17 21 21 O 1.21280 * 118.62414 * 181.68028 * 20 19 18 22 22 C 1.46900 * 110.99930 * 190.49103 * 16 15 13 23 23 H 1.09004 * 109.38526 * 166.77023 * 22 16 15 24 24 C 1.50695 * 109.39007 * 47.08451 * 22 16 15 25 25 C 1.38237 * 120.00086 * 99.56087 * 24 22 16 26 26 C 1.38240 * 119.99768 * 179.80915 * 25 24 22 27 27 C 1.38231 * 119.99938 * 0.40407 * 26 25 24 28 28 C 1.38236 * 120.00275 * 359.85146 * 27 26 25 29 29 C 1.38231 * 119.99814 * 359.95949 * 28 27 26 30 30 H 1.09001 * 109.46819 * 60.00015 * 1 2 3 31 31 H 1.08997 * 109.47129 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47189 * 299.99970 * 1 2 3 33 33 H 1.09002 * 109.46905 * 240.00027 * 2 1 3 34 34 H 1.08994 * 109.47133 * 119.99764 * 2 1 3 35 35 H 1.08993 * 109.47291 * 29.72796 * 4 3 2 36 36 H 1.09007 * 109.47255 * 149.72723 * 4 3 2 37 37 H 0.97007 * 119.99471 * 180.02562 * 8 7 5 38 38 H 1.09003 * 109.46847 * 299.99901 * 15 13 3 39 39 H 1.09003 * 109.47508 * 59.99473 * 15 13 3 40 40 H 1.08995 * 109.59215 * 174.14663 * 17 16 15 41 41 H 1.09009 * 109.59225 * 294.44584 * 17 16 15 42 42 H 1.08992 * 109.37254 * 170.46671 * 18 17 16 43 43 H 1.08997 * 109.37200 * 290.23456 * 18 17 16 44 44 H 0.97002 * 118.53957 * 161.81290 * 19 18 17 45 45 H 1.07991 * 120.00034 * 0.02562 * 25 24 22 46 46 H 1.07997 * 120.00049 * 180.23209 * 26 25 24 47 47 H 1.07999 * 119.99837 * 179.83002 * 27 26 25 48 48 H 1.07998 * 120.00053 * 179.97438 * 28 27 26 49 49 H 1.07998 * 119.99950 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 1.2687 5 6 1.0086 2.7878 1.7003 6 1 0.1188 2.7334 1.0907 7 6 0.9974 3.5122 2.8734 8 7 -0.0966 4.1374 3.2498 9 14 2.5368 3.6067 3.9274 10 1 3.3545 4.7725 3.5061 11 1 2.1517 3.7615 5.3533 12 1 3.3280 2.3611 3.7608 13 6 2.2483 2.0147 -1.1672 14 8 2.6573 3.1564 -1.1671 15 6 1.9971 1.3044 -2.4723 16 7 2.3222 2.2019 -3.5889 17 6 3.7682 2.4702 -3.6462 18 6 4.5139 1.1354 -3.6971 19 7 3.9490 0.2861 -4.7417 20 6 2.7385 0.4928 -5.2710 21 8 2.3331 -0.2797 -6.1135 22 6 1.8597 1.6423 -4.8659 23 1 1.8971 2.4147 -5.6342 24 6 0.4406 1.1580 -4.7153 25 6 -0.6080 1.9420 -5.1589 26 6 -1.9095 1.4960 -5.0243 27 6 -2.1628 0.2698 -4.4386 28 6 -1.1145 -0.5118 -3.9903 29 6 0.1871 -0.0676 -4.1284 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.5458 1.3446 2.0296 36 1 3.0677 2.7951 1.1397 37 1 -0.1043 4.6474 4.0749 38 1 2.6238 0.4142 -2.5279 39 1 0.9481 1.0144 -2.5323 40 1 3.9970 3.0511 -4.5397 41 1 4.0720 3.0277 -2.7601 42 1 5.5673 1.3176 -3.9095 43 1 4.4208 0.6323 -2.7346 44 1 4.4752 -0.4612 -5.0665 45 1 -0.4102 2.9013 -5.6137 46 1 -2.7286 2.1068 -5.3742 47 1 -3.1798 -0.0774 -4.3310 48 1 -1.3125 -1.4697 -3.5323 49 1 1.0061 -0.6781 -3.7778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156204759.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:17 Heat of formation + Delta-G solvation = -7.224729 kcal Electronic energy + Delta-G solvation = -32304.506823 eV Core-core repulsion = 28232.658234 eV Total energy + Delta-G solvation = -4071.848589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.51350 -39.14819 -38.87278 -37.22404 -35.36866 -34.66937 -32.67920 -31.77118 -31.04924 -30.25532 -29.32107 -28.91651 -27.30557 -25.01513 -23.45012 -22.96191 -22.68725 -21.86066 -21.71911 -19.41621 -18.33170 -17.63436 -17.19931 -16.93436 -16.79944 -16.40784 -15.93568 -15.79317 -15.33569 -15.09714 -14.56909 -14.40656 -14.16534 -13.98421 -13.66823 -13.45747 -13.39058 -13.21784 -13.09214 -12.69360 -12.51677 -12.45944 -12.38935 -12.24264 -11.78389 -11.63759 -11.42424 -11.29042 -11.17722 -11.03684 -10.88245 -10.63983 -10.56746 -10.44313 -10.13634 -9.47484 -9.39014 -9.10158 -8.91062 -8.76361 -8.57675 -8.28744 -7.73796 -6.07149 -4.05318 1.23689 1.39336 2.33914 2.89988 3.26357 3.28429 3.33878 3.35566 3.44176 3.78997 4.05095 4.25748 4.39576 4.40724 4.64846 4.74385 4.84105 4.90686 4.95293 5.03909 5.07588 5.17171 5.21805 5.26549 5.37903 5.43556 5.46407 5.56394 5.61176 5.71847 5.77296 5.84243 5.91750 5.98444 6.08916 6.30440 6.36418 6.41403 6.46842 6.49630 6.58878 6.73449 6.74132 6.83248 6.93007 6.93342 6.99372 7.33872 7.61796 7.92412 8.22369 8.48467 8.94031 8.99815 9.53109 11.06109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012352 B = 0.003955 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.230210 B = 7077.372211 C = 8236.654532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.112 3.888 3 N -0.593 5.593 4 C 0.218 3.782 5 C -0.524 4.524 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.513 3.487 14 O -0.523 6.523 15 C 0.014 3.986 16 N -0.493 5.493 17 C 0.031 3.969 18 C 0.067 3.933 19 N -0.722 5.722 20 C 0.492 3.508 21 O -0.540 6.540 22 C 0.112 3.888 23 H 0.126 0.874 24 C -0.070 4.070 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.113 4.113 28 C -0.119 4.119 29 C -0.100 4.100 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.028 0.972 36 H 0.036 0.964 37 H 0.264 0.736 38 H 0.060 0.940 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.124 0.876 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.398 0.602 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.615 -10.388 -16.021 19.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.012 4.012 3 N -0.326 5.326 4 C 0.097 3.903 5 C -0.562 4.562 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.536 5.536 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.299 3.701 14 O -0.399 6.399 15 C -0.116 4.116 16 N -0.216 5.216 17 C -0.097 4.097 18 C -0.059 4.059 19 N -0.376 5.376 20 C 0.277 3.723 21 O -0.415 6.415 22 C 0.001 3.999 23 H 0.144 0.856 24 C -0.071 4.071 25 C -0.110 4.110 26 C -0.138 4.138 27 C -0.131 4.131 28 C -0.137 4.137 29 C -0.118 4.118 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.142 0.858 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.234 0.766 45 H 0.144 0.856 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.180 -9.408 -16.126 19.132 hybrid contribution 1.361 -0.978 0.554 1.765 sum 5.540 -10.386 -15.573 19.521 Atomic orbital electron populations 1.22228 0.95746 1.00992 1.03945 1.21409 0.95132 0.83280 1.01377 1.47943 1.64371 1.13333 1.06958 1.19661 0.98079 0.92695 0.79858 1.21336 0.97527 1.30367 1.07019 0.90484 1.24855 0.95897 0.94854 0.97398 1.69899 1.27278 1.32761 1.23631 0.86885 0.83950 0.79137 0.79864 1.19982 1.21179 1.19205 1.19977 0.78822 0.86808 0.84496 1.90631 1.45461 1.17087 1.86743 1.22597 1.04243 0.94297 0.90477 1.62289 1.15208 1.43723 1.00395 1.22829 0.85649 0.95058 1.06132 1.22223 0.99295 0.93358 0.90974 1.45682 1.18115 1.33064 1.40701 1.21126 0.82218 0.87352 0.81645 1.90758 1.72120 1.46054 1.32599 1.20906 0.91235 0.93863 0.93897 0.85649 1.19123 0.92626 0.95114 1.00195 1.20949 0.92101 0.99078 0.98852 1.21122 0.96543 0.96409 0.99686 1.21175 0.99081 0.94759 0.98068 1.21058 0.92375 0.99984 1.00254 1.20936 0.97109 0.95266 0.98504 0.93069 0.92804 0.90083 0.92391 0.90663 0.95390 0.94652 0.92637 0.92235 0.86582 0.89586 0.85764 0.89581 0.91160 0.76579 0.85627 0.85788 0.85977 0.85894 0.86902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.16 0.38 -2.26 16 2 C 0.11 1.69 5.98 -4.04 -0.02 1.67 16 3 N -0.59 -11.57 2.46 -175.07 -0.43 -12.00 16 4 C 0.22 5.10 4.27 -5.20 -0.02 5.08 16 5 C -0.52 -14.59 9.48 -34.44 -0.33 -14.92 16 6 H 0.08 2.37 7.69 -52.49 -0.40 1.97 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.31 13.96 55.43 0.77 -26.53 16 9 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 10 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 C 0.51 9.84 7.44 -10.99 -0.08 9.76 16 14 O -0.52 -11.92 14.02 5.56 0.08 -11.84 16 15 C 0.01 0.21 2.28 -4.98 -0.01 0.20 16 16 N -0.49 -6.77 4.62 -230.90 -1.07 -7.84 16 17 C 0.03 0.36 5.63 -3.67 -0.02 0.34 16 18 C 0.07 0.61 6.44 -4.32 -0.03 0.58 16 19 N -0.72 -7.07 5.36 -61.07 -0.33 -7.39 16 20 C 0.49 6.14 5.81 -11.67 -0.07 6.07 16 21 O -0.54 -8.37 16.84 5.56 0.09 -8.28 16 22 C 0.11 1.39 2.74 -70.23 -0.19 1.20 16 23 H 0.13 1.40 8.00 -51.93 -0.42 0.98 16 24 C -0.07 -0.91 3.98 -104.62 -0.42 -1.33 16 25 C -0.09 -1.12 9.67 -39.58 -0.38 -1.50 16 26 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 27 C -0.11 -1.25 10.05 -39.58 -0.40 -1.64 16 28 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 29 C -0.10 -1.27 6.21 -39.58 -0.25 -1.52 16 30 H 0.05 0.81 7.24 -51.93 -0.38 0.44 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.54 7.30 -51.93 -0.38 1.16 16 33 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 34 H 0.07 1.06 7.89 -51.93 -0.41 0.65 16 35 H 0.03 0.63 6.95 -51.93 -0.36 0.27 16 36 H 0.04 0.88 6.85 -51.93 -0.36 0.53 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.06 0.76 4.79 -51.93 -0.25 0.51 16 39 H 0.12 1.76 3.87 -51.93 -0.20 1.56 16 40 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 41 H 0.12 1.72 6.15 -51.92 -0.32 1.40 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.68 6.70 -51.93 -0.35 0.33 16 44 H 0.40 3.33 8.84 -40.82 -0.36 2.97 16 45 H 0.13 1.32 8.03 -52.49 -0.42 0.89 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 48 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 49 H 0.11 1.41 6.74 -52.49 -0.35 1.05 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -35.20 381.56 -9.52 -44.71 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -6.99 Total: 6.77 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -2.73 Total: 0.17 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -1.05 Total: -53.76 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: 0.17 Total: -20.12 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.20 -9.52 -44.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156204759.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.490 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds