Wall clock time and date at job start Wed Apr 1 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39960 * 120.09001 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99786 * 296.04184 * 10 9 8 12 12 C 1.46901 * 111.00289 * 59.99535 * 10 9 8 13 13 C 1.50698 * 109.47146 * 170.00146 * 12 10 9 14 14 O 1.21279 * 120.00140 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00084 * 180.02562 * 13 12 10 16 16 C 1.46503 * 120.00210 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47109 * 89.99758 * 16 15 13 18 18 H 1.08003 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99507 * 0.02562 * 19 17 16 21 21 Si 1.86788 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47546 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47180 * 119.99764 * 21 19 17 24 24 H 1.48500 * 109.47184 * 240.00131 * 21 19 17 25 25 C 1.46502 * 119.99713 * 359.97438 * 15 13 12 26 26 C 1.52994 * 109.46858 * 90.00523 * 25 15 13 27 27 C 1.47202 * 109.46974 * 180.02562 * 26 25 15 28 28 N 8.98253 * 110.60459 * 311.88265 * 2 1 3 29 29 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 30 30 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 31 31 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 33 33 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 34 34 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 35 35 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 36 36 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47240 * 59.99954 * 11 10 9 39 39 H 1.09002 * 109.47489 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47247 * 300.00043 * 11 10 9 41 41 H 1.09002 * 109.46888 * 289.99947 * 12 10 9 42 42 H 1.08998 * 109.46716 * 50.00252 * 12 10 9 43 43 H 1.08995 * 109.47200 * 210.00167 * 16 15 13 44 44 H 1.08999 * 109.46959 * 329.99853 * 16 15 13 45 45 H 0.96996 * 119.99411 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46900 * 209.99950 * 25 15 13 47 47 H 1.08996 * 109.47041 * 329.99841 * 25 15 13 48 48 H 1.09003 * 109.46897 * 299.99429 * 26 25 15 49 49 H 1.08996 * 109.47851 * 59.99815 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 -0.0005 11 6 3.1979 4.7092 1.2313 12 6 3.2665 4.7583 -1.1885 13 6 2.1820 5.8001 -1.2855 14 8 1.3067 5.8441 -0.4472 15 7 2.1847 6.6830 -2.3038 16 6 1.1307 7.6962 -2.3977 17 6 1.5576 8.9356 -1.6544 18 1 2.5182 8.9657 -1.1616 19 6 0.7219 10.0311 -1.6033 20 7 -0.4480 9.9941 -2.2030 21 14 1.2514 11.5676 -0.6825 22 1 2.6005 11.3551 -0.0993 23 1 1.2930 12.7176 -1.6212 24 1 0.2815 11.8515 0.4056 25 6 3.2424 6.6302 -3.3161 26 6 2.8112 5.7057 -4.4564 27 6 3.8741 5.6522 -5.4733 28 7 4.6911 5.6132 -6.2598 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.7884 -0.5704 0.0014 35 1 6.2281 -0.2460 -0.0010 36 1 7.1729 2.0250 0.0045 37 1 5.6827 3.9836 0.0022 38 1 4.2281 5.0561 1.3114 39 1 2.5263 5.5673 1.2042 40 1 2.9562 4.0863 2.0925 41 1 4.2361 5.2496 -1.1079 42 1 3.2495 4.1320 -2.0805 43 1 0.9560 7.9426 -3.4450 44 1 0.2124 7.3070 -1.9580 45 1 -1.0357 10.7649 -2.1674 46 1 3.4206 7.6316 -3.7080 47 1 4.1582 6.2482 -2.8651 48 1 2.6330 4.7043 -4.0645 49 1 1.8953 6.0877 -4.9074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159341891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:53 Heat of formation + Delta-G solvation = -0.514135 kcal Electronic energy + Delta-G solvation = -30518.102739 eV Core-core repulsion = 26446.545143 eV Total energy + Delta-G solvation = -4071.557596 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.58608 -39.33639 -37.92628 -36.89128 -36.09203 -35.07204 -32.87575 -31.99161 -30.81038 -30.33446 -29.46504 -28.54266 -26.74163 -24.91444 -24.06345 -23.95015 -22.61013 -21.88197 -20.91833 -18.47949 -18.36006 -17.57303 -16.97127 -16.44254 -16.22394 -16.19533 -15.79654 -15.53727 -14.97547 -14.82335 -14.63926 -14.52759 -14.19991 -13.94572 -13.75913 -13.48415 -13.21173 -13.15172 -12.74970 -12.71531 -12.45519 -12.40947 -12.18884 -12.07015 -11.96831 -11.84520 -11.80306 -11.51852 -11.39289 -11.24051 -10.97571 -10.95337 -10.86925 -10.77722 -10.61238 -10.16357 -9.66500 -9.07326 -8.93515 -8.46053 -8.26295 -8.17527 -7.78925 -6.07294 -4.11701 1.08374 1.31328 2.75985 2.84266 3.13390 3.28659 3.34094 3.37484 3.41191 3.49373 3.59643 3.94357 4.30776 4.43535 4.63701 4.76515 4.78545 4.89889 4.94053 4.99331 5.06018 5.11969 5.14469 5.20683 5.28141 5.30381 5.32644 5.40783 5.47699 5.57309 5.59238 5.67207 5.70191 5.78260 5.85531 5.95108 6.09341 6.10007 6.20518 6.32933 6.40349 6.59922 6.86386 7.04256 7.14722 7.40864 7.47399 7.59716 7.62549 7.89287 8.19619 8.31035 8.87751 9.05547 9.53844 11.00810 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.003139 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.443635 B = 8918.341009 C = 9801.744684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.287 6.287 4 C 0.156 3.844 5 C -0.210 4.210 6 C -0.084 4.084 7 C -0.152 4.152 8 C -0.110 4.110 9 C 0.059 3.941 10 N -0.474 5.474 11 C 0.026 3.974 12 C 0.039 3.961 13 C 0.510 3.490 14 O -0.511 6.511 15 N -0.599 5.599 16 C 0.246 3.754 17 C -0.527 4.527 18 H 0.058 0.942 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.118 3.882 26 C -0.052 4.052 27 C 0.218 3.782 28 N -0.447 5.447 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.021 0.979 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.034 0.966 44 H 0.047 0.953 45 H 0.263 0.737 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -20.362 2.920 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.024 4.024 3 O -0.199 6.199 4 C 0.109 3.891 5 C -0.229 4.229 6 C -0.103 4.103 7 C -0.171 4.171 8 C -0.131 4.131 9 C -0.036 4.036 10 N -0.195 5.195 11 C -0.120 4.120 12 C -0.091 4.091 13 C 0.296 3.704 14 O -0.386 6.386 15 N -0.332 5.332 16 C 0.127 3.873 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.008 4.008 26 C -0.093 4.093 27 C -0.100 4.100 28 N -0.124 5.124 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.146 0.854 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.039 0.961 39 H 0.117 0.883 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.114 0.886 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.072 0.928 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.124 0.876 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 8.967 -20.272 2.165 22.272 hybrid contribution 0.930 0.954 0.706 1.508 sum 9.897 -19.318 2.871 21.894 Atomic orbital electron populations 1.21747 0.92614 1.02404 1.04093 1.22796 0.96239 0.82590 1.00785 1.86348 1.18066 1.27948 1.87581 1.18912 0.82868 0.92430 0.94889 1.21189 0.94303 0.97835 1.09612 1.20926 0.94250 0.97221 0.97864 1.20909 0.99654 0.92250 1.04260 1.21552 0.92896 0.99566 0.99047 1.18174 0.89499 0.89897 1.06020 1.59129 1.51240 1.06747 1.02390 1.22615 0.99886 0.99125 0.90381 1.22184 0.97379 0.95134 0.94403 1.20085 0.86579 0.81622 0.82121 1.90665 1.37463 1.71575 1.38847 1.48214 1.28253 1.32884 1.23852 1.19332 0.85784 0.84673 0.97480 1.21454 1.03402 0.98095 1.33627 0.92397 1.24915 0.94777 0.98771 0.95530 1.69933 1.09046 1.30709 1.43498 0.86479 0.78698 0.82790 0.79658 1.19845 1.21028 1.20901 1.21288 0.90815 1.00478 0.88266 1.19924 0.93752 1.03728 0.91932 1.29069 0.94125 0.92854 0.93953 1.81145 1.11172 1.09146 1.10929 0.91319 0.91243 0.90743 0.92394 0.92454 0.85381 0.85945 0.86039 0.85588 0.96065 0.88265 0.91659 0.92216 0.88590 0.94799 0.93485 0.92755 0.88749 0.90912 0.87587 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.16 0.38 -0.88 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.29 -3.84 9.88 -19.75 -0.20 -4.03 16 4 C 0.16 1.97 6.70 -39.08 -0.26 1.71 16 5 C -0.21 -2.09 9.04 -39.46 -0.36 -2.44 16 6 C -0.08 -0.75 10.04 -39.56 -0.40 -1.15 16 7 C -0.15 -1.43 10.04 -39.58 -0.40 -1.83 16 8 C -0.11 -1.22 8.66 -39.41 -0.34 -1.57 16 9 C 0.06 0.78 4.70 -83.56 -0.39 0.39 16 10 N -0.47 -7.24 4.22 -180.16 -0.76 -8.00 16 11 C 0.03 0.40 9.03 60.06 0.54 0.94 16 12 C 0.04 0.56 3.59 -4.98 -0.02 0.54 16 13 C 0.51 9.59 7.37 -10.99 -0.08 9.51 16 14 O -0.51 -11.92 13.91 5.56 0.08 -11.84 16 15 N -0.60 -11.02 2.46 -175.06 -0.43 -11.45 16 16 C 0.25 5.82 5.16 -5.19 -0.03 5.80 16 17 C -0.53 -13.99 9.39 -34.44 -0.32 -14.31 16 18 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.12 1.59 5.17 -4.04 -0.02 1.57 16 26 C -0.05 -0.56 6.03 -29.52 -0.18 -0.74 16 27 C 0.22 2.70 15.43 -20.80 -0.32 2.38 16 28 N -0.45 -6.67 18.53 42.10 0.78 -5.89 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 33 H 0.06 0.44 7.66 -51.92 -0.40 0.04 16 34 H 0.13 0.99 6.30 -52.48 -0.33 0.66 16 35 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 37 H 0.13 1.28 7.14 -52.49 -0.37 0.91 16 38 H 0.02 0.28 7.35 -51.93 -0.38 -0.10 16 39 H 0.10 1.80 5.82 -51.93 -0.30 1.50 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.76 6.74 -51.93 -0.35 0.41 16 42 H 0.10 1.20 7.10 -51.93 -0.37 0.84 16 43 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 44 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 47 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 48 H 0.11 0.99 7.22 -51.93 -0.37 0.62 16 49 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 410.62 15.07 6.19 6.19 Total: -1.00 -33.73 410.62 -8.05 -41.79 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.34 Total: -0.37 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.09 Total: 2.19 kcal Atomic # 7 Polarization: -50.41 SS G_CDS: 0.33 Total: -50.09 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.12 Total: -15.87 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.73 -8.05 -41.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159341891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.271 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds