Wall clock time and date at job start Wed Apr 1 2020 05:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.47595 * 2 1 4 4 C 1.36004 * 117.00364 * 179.97438 * 3 2 1 5 5 C 1.38508 * 120.08172 * 359.97438 * 4 3 2 6 6 C 1.38285 * 120.01969 * 180.02562 * 5 4 3 7 7 C 1.38255 * 120.17880 * 0.02562 * 6 5 4 8 8 C 1.38217 * 120.16301 * 359.97438 * 7 6 5 9 9 C 1.38729 * 119.97977 * 0.02562 * 8 7 6 10 10 N 1.39960 * 120.09001 * 180.02562 * 9 8 7 11 11 C 1.46900 * 110.99786 * 296.04184 * 10 9 8 12 12 C 1.46901 * 111.00289 * 59.99535 * 10 9 8 13 13 C 1.50698 * 109.47146 * 170.00146 * 12 10 9 14 14 O 1.21279 * 120.00140 * 0.02562 * 13 12 10 15 15 N 1.34776 * 120.00084 * 180.02562 * 13 12 10 16 16 C 1.46503 * 120.00210 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47109 * 89.99758 * 16 15 13 18 18 H 1.08003 * 119.99988 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00107 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99507 * 0.02562 * 19 17 16 21 21 Si 1.86788 * 120.00153 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47546 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47180 * 119.99764 * 21 19 17 24 24 H 1.48500 * 109.47184 * 240.00131 * 21 19 17 25 25 C 1.46502 * 119.99713 * 359.97438 * 15 13 12 26 26 C 1.52994 * 109.46858 * 90.00523 * 25 15 13 27 27 C 1.47202 * 109.46974 * 180.02562 * 26 25 15 28 28 N 8.98253 * 110.60459 * 311.88265 * 2 1 3 29 29 H 1.08997 * 109.47415 * 300.00322 * 1 2 3 30 30 H 1.09005 * 109.46606 * 60.00391 * 1 2 3 31 31 H 1.09003 * 109.47541 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47415 * 239.99677 * 2 1 3 33 33 H 1.09010 * 109.47027 * 119.99803 * 2 1 3 34 34 H 1.08007 * 119.98777 * 0.03715 * 5 4 3 35 35 H 1.07997 * 119.90476 * 180.27859 * 6 5 4 36 36 H 1.07994 * 119.91483 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.01004 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47240 * 59.99954 * 11 10 9 39 39 H 1.09002 * 109.47489 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.47247 * 300.00043 * 11 10 9 41 41 H 1.09002 * 109.46888 * 289.99947 * 12 10 9 42 42 H 1.08998 * 109.46716 * 50.00252 * 12 10 9 43 43 H 1.08995 * 109.47200 * 210.00167 * 16 15 13 44 44 H 1.08999 * 109.46959 * 329.99853 * 16 15 13 45 45 H 0.96996 * 119.99411 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.46900 * 209.99950 * 25 15 13 47 47 H 1.08996 * 109.47041 * 329.99841 * 25 15 13 48 48 H 1.09003 * 109.46897 * 299.99429 * 26 25 15 49 49 H 1.08996 * 109.47851 * 59.99815 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3547 1.5254 0.0005 5 6 4.2000 0.4282 0.0016 6 6 5.5707 0.6108 0.0027 7 6 6.1018 1.8873 0.0033 8 6 5.2652 2.9876 0.0022 9 6 3.8891 2.8120 0.0011 10 7 3.0398 3.9245 -0.0005 11 6 3.1979 4.7092 1.2313 12 6 3.2665 4.7583 -1.1885 13 6 2.1820 5.8001 -1.2855 14 8 1.3067 5.8441 -0.4472 15 7 2.1847 6.6830 -2.3038 16 6 1.1307 7.6962 -2.3977 17 6 1.5576 8.9356 -1.6544 18 1 2.5182 8.9657 -1.1616 19 6 0.7219 10.0311 -1.6033 20 7 -0.4480 9.9941 -2.2030 21 14 1.2514 11.5676 -0.6825 22 1 2.6005 11.3551 -0.0993 23 1 1.2930 12.7176 -1.6212 24 1 0.2815 11.8515 0.4056 25 6 3.2424 6.6302 -3.3161 26 6 2.8112 5.7057 -4.4564 27 6 3.8741 5.6522 -5.4733 28 7 4.6911 5.6132 -6.2598 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.7884 -0.5704 0.0014 35 1 6.2281 -0.2460 -0.0010 36 1 7.1729 2.0250 0.0045 37 1 5.6827 3.9836 0.0022 38 1 4.2281 5.0561 1.3114 39 1 2.5263 5.5673 1.2042 40 1 2.9562 4.0863 2.0925 41 1 4.2361 5.2496 -1.1079 42 1 3.2495 4.1320 -2.0805 43 1 0.9560 7.9426 -3.4450 44 1 0.2124 7.3070 -1.9580 45 1 -1.0357 10.7649 -2.1674 46 1 3.4206 7.6316 -3.7080 47 1 4.1582 6.2482 -2.8651 48 1 2.6330 4.7043 -4.0645 49 1 1.8953 6.0877 -4.9074 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159341891.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:51 Heat of formation + Delta-G solvation = -21.000421 kcal Electronic energy + Delta-G solvation = -30518.991091 eV Core-core repulsion = 26446.545143 eV Total energy + Delta-G solvation = -4072.445948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.52027 -40.63571 -38.86328 -38.01420 -37.12883 -36.48548 -34.83927 -32.69775 -32.16146 -31.18159 -30.47598 -29.78522 -28.35689 -26.04080 -25.29173 -24.90348 -24.15654 -22.63215 -21.86220 -19.87649 -19.21655 -18.78850 -18.32152 -18.10490 -17.25348 -17.03136 -16.91550 -16.74198 -16.27481 -16.16980 -15.75104 -15.53255 -15.28472 -15.09734 -14.94768 -14.59275 -14.33071 -14.12434 -14.03281 -13.87608 -13.57081 -13.53630 -13.32724 -13.24278 -13.10468 -12.84548 -12.79742 -12.68852 -12.64653 -12.56224 -12.50553 -12.48533 -12.15567 -11.84758 -11.72751 -11.61148 -11.56293 -10.57356 -10.50018 -9.79131 -9.43861 -9.32454 -9.00853 -8.15916 -6.27982 0.31180 0.54576 1.39863 1.42551 1.52772 1.68849 1.83868 1.93101 2.21181 2.40877 2.45010 2.80995 2.89708 3.14480 3.18430 3.77733 3.95792 4.01060 4.07468 4.10834 4.11642 4.21857 4.25924 4.27247 4.33220 4.40400 4.43623 4.51878 4.57680 4.62473 4.67666 4.81449 4.83400 4.93281 4.98463 5.05059 5.10927 5.13565 5.26411 5.36869 5.40056 5.46952 5.60198 5.64472 5.82821 5.88225 5.93066 6.15689 6.24620 6.59410 6.75558 6.79729 6.84720 7.37378 7.58376 8.91001 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.003139 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.443635 B = 8918.341009 C = 9801.744684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.321 6.321 4 C 0.135 3.865 5 C -0.208 4.208 6 C -0.079 4.079 7 C -0.151 4.151 8 C -0.114 4.114 9 C 0.032 3.968 10 N -0.494 5.494 11 C 0.035 3.965 12 C 0.053 3.947 13 C 0.505 3.495 14 O -0.566 6.566 15 N -0.599 5.599 16 C 0.262 3.738 17 C -0.536 4.536 18 H 0.054 0.946 19 C 0.010 3.990 20 N -0.926 5.926 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.286 1.286 25 C 0.114 3.886 26 C -0.039 4.039 27 C 0.246 3.754 28 N -0.486 5.486 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.039 0.961 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.034 0.966 44 H 0.002 0.998 45 H 0.265 0.735 46 H 0.087 0.913 47 H 0.103 0.897 48 H 0.130 0.870 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.958 -22.272 2.750 25.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.235 6.235 4 C 0.088 3.912 5 C -0.227 4.227 6 C -0.097 4.097 7 C -0.170 4.170 8 C -0.134 4.134 9 C -0.062 4.062 10 N -0.215 5.215 11 C -0.112 4.112 12 C -0.077 4.077 13 C 0.293 3.707 14 O -0.444 6.444 15 N -0.331 5.331 16 C 0.141 3.859 17 C -0.575 4.575 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.566 5.566 21 Si 0.783 3.217 22 H -0.191 1.191 23 H -0.199 1.199 24 H -0.212 1.212 25 C -0.011 4.011 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.164 5.164 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.138 0.862 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.121 0.879 48 H 0.148 0.852 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.874 -22.205 1.964 25.257 hybrid contribution 0.041 1.447 0.784 1.646 sum 11.915 -20.758 2.749 24.092 Atomic orbital electron populations 1.21783 0.92607 1.03781 1.02586 1.23022 0.96302 0.81359 1.02215 1.86303 1.18925 1.30293 1.87968 1.19190 0.82979 0.93100 0.95887 1.21460 0.94614 0.98018 1.08652 1.21339 0.94190 0.98175 0.95953 1.21238 1.00742 0.91938 1.03043 1.21647 0.92095 1.00614 0.99007 1.18284 0.90137 0.89196 1.08593 1.58965 1.53005 1.07375 1.02120 1.22421 0.99881 0.97884 0.90980 1.22106 0.96021 0.94132 0.95402 1.20940 0.86863 0.81934 0.80957 1.90646 1.39858 1.73112 1.40826 1.48082 1.28179 1.31676 1.25129 1.18778 0.85798 0.84918 0.96405 1.21773 1.03140 0.99154 1.33455 0.92786 1.25727 0.94845 1.01872 0.96414 1.70040 1.10084 1.31643 1.44874 0.85509 0.78325 0.79423 0.78401 1.19147 1.19912 1.21190 1.21509 0.90363 1.01141 0.88043 1.19824 0.93175 1.04375 0.90637 1.29042 0.93328 0.91509 0.93235 1.81186 1.12419 1.10626 1.12181 0.92840 0.92692 0.87899 0.90759 0.90979 0.83311 0.82864 0.83621 0.84934 0.94222 0.91962 0.91768 0.89831 0.86236 0.94833 0.97977 0.92643 0.89491 0.87907 0.85211 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 10.28 71.98 0.74 -1.72 16 2 C 0.05 0.78 5.46 71.98 0.39 1.17 16 3 O -0.32 -8.52 9.88 -93.59 -0.92 -9.44 16 4 C 0.14 3.23 6.70 22.59 0.15 3.38 16 5 C -0.21 -3.53 9.04 22.35 0.20 -3.33 16 6 C -0.08 -1.09 10.04 22.28 0.22 -0.87 16 7 C -0.15 -2.28 10.04 22.27 0.22 -2.06 16 8 C -0.11 -2.22 8.66 22.38 0.19 -2.03 16 9 C 0.03 0.81 4.70 38.22 0.18 0.99 16 10 N -0.49 -14.97 4.22 -723.91 -3.06 -18.03 16 11 C 0.03 1.09 9.03 127.69 1.15 2.24 16 12 C 0.05 1.46 3.59 85.56 0.31 1.77 16 13 C 0.50 19.30 7.37 87.66 0.65 19.95 16 14 O -0.57 -27.90 13.91 -3.03 -0.04 -27.94 16 15 N -0.60 -22.17 2.46 -826.17 -2.03 -24.20 16 16 C 0.26 12.87 5.16 85.63 0.44 13.31 16 17 C -0.54 -29.15 9.39 25.60 0.24 -28.91 16 18 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 19 C 0.01 0.58 5.46 84.66 0.46 1.04 16 20 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 21 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 24 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 25 C 0.11 2.90 5.17 86.38 0.45 3.35 16 26 C -0.04 -0.77 6.03 28.79 0.17 -0.59 16 27 C 0.25 5.58 15.43 89.46 1.38 6.96 16 28 N -0.49 -13.71 18.53 19.99 0.37 -13.34 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 0.99 7.67 -2.39 -0.02 0.97 16 33 H 0.07 0.98 7.66 -2.38 -0.02 0.96 16 34 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 35 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 37 H 0.13 2.31 7.14 -2.91 -0.02 2.29 16 38 H 0.04 1.03 7.35 -2.39 -0.02 1.02 16 39 H 0.06 2.40 5.82 -2.39 -0.01 2.38 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 1.91 6.74 -2.39 -0.02 1.89 16 42 H 0.12 2.71 7.10 -2.39 -0.02 2.69 16 43 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.00 0.12 7.42 -2.39 -0.02 0.10 16 45 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.09 2.38 8.07 -2.39 -0.02 2.36 16 47 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 48 H 0.13 2.04 7.22 -2.39 -0.02 2.02 16 49 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -77.54 410.62 5.14 -72.40 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.95 Total: 13.89 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 7.56 Total: 14.64 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.43 Total: -109.51 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -0.97 Total: -37.38 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.54 5.14 -72.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159341891.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.399 kcal (2) G-P(sol) polarization free energy of solvation -77.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds