Wall clock time and date at job start Wed Apr 1 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46910 * 2 1 4 4 C 1.42905 * 114.00031 * 180.02562 * 3 2 1 5 5 H 1.09005 * 112.87289 * 341.30973 * 4 3 2 6 6 C 1.54214 * 113.65807 * 112.73963 * 4 3 2 7 7 C 1.53916 * 87.11727 * 139.34814 * 6 4 3 8 8 H 1.09001 * 113.65035 * 220.60777 * 7 6 4 9 9 N 1.46502 * 113.64977 * 89.67752 * 7 6 4 10 10 S 1.65601 * 119.99718 * 115.97489 * 9 7 6 11 11 O 1.42096 * 104.27856 * 308.92849 * 10 9 7 12 12 O 1.42101 * 104.27519 * 181.07126 * 10 9 7 13 13 C 1.81399 * 104.45044 * 65.00229 * 10 9 7 14 14 C 1.52996 * 109.47374 * 179.97438 * 13 10 9 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 10 16 16 C 1.50706 * 109.46931 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00193 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99398 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00338 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99424 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46845 * 180.02562 * 20 18 16 22 22 H 1.48503 * 109.47399 * 299.99813 * 20 18 16 23 23 H 1.48498 * 109.47295 * 60.00420 * 20 18 16 24 24 C 1.53019 * 86.95634 * 335.14168 * 7 6 4 25 25 C 1.53561 * 115.12948 * 268.21020 * 24 7 6 26 26 C 1.55061 * 103.98342 * 206.87099 * 25 24 7 27 27 C 1.54947 * 102.86235 * 37.29881 * 26 25 24 28 28 C 1.53173 * 115.37252 * 142.20046 * 24 7 6 29 29 H 1.09003 * 109.46774 * 60.00743 * 1 2 3 30 30 H 1.09007 * 109.46716 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47238 * 299.99932 * 1 2 3 32 32 H 1.08995 * 109.47547 * 239.99633 * 2 1 3 33 33 H 1.09001 * 109.47404 * 119.99656 * 2 1 3 34 34 H 1.09002 * 113.58881 * 24.81044 * 6 4 3 35 35 H 1.08999 * 113.67933 * 253.89915 * 6 4 3 36 36 H 0.96992 * 119.99847 * 295.97504 * 9 7 6 37 37 H 1.09000 * 109.47234 * 59.99844 * 13 10 9 38 38 H 1.09004 * 109.46978 * 299.99806 * 13 10 9 39 39 H 1.09004 * 109.47368 * 59.99868 * 14 13 10 40 40 H 1.09004 * 109.47108 * 299.99969 * 14 13 10 41 41 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 42 42 H 1.08992 * 109.46974 * 300.00318 * 15 14 13 43 43 H 0.97000 * 119.99706 * 359.97438 * 19 18 16 44 44 H 1.09005 * 110.52609 * 325.49210 * 25 24 7 45 45 H 1.09003 * 110.52628 * 88.24066 * 25 24 7 46 46 H 1.08999 * 110.73594 * 278.95290 * 26 25 24 47 47 H 1.09005 * 110.89021 * 155.71462 * 26 25 24 48 48 H 1.09002 * 110.48018 * 203.76945 * 27 26 25 49 49 H 1.08995 * 110.47974 * 81.13800 * 27 26 25 50 50 H 1.08998 * 110.09124 * 248.85961 * 28 24 7 51 51 H 1.08994 * 110.09225 * 10.45358 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9286 0.5452 0.3209 6 6 4.0041 2.0536 -1.3035 7 6 4.9819 2.8485 -0.4197 8 1 5.1384 3.8741 -0.7537 9 7 6.2353 2.1409 -0.1466 10 16 7.6698 2.7528 -0.7035 11 8 7.4356 2.9938 -2.0842 12 8 8.6422 1.8074 -0.2795 13 6 7.8718 4.3182 0.1906 14 6 9.1778 4.9876 -0.2417 15 6 9.3478 6.3083 0.5120 16 6 10.6346 6.9673 0.0865 17 1 11.2676 6.4921 -0.6482 18 6 11.0037 8.1771 0.6354 19 7 10.2332 8.7556 1.5305 20 14 12.5984 8.9944 0.1076 21 1 12.7640 10.2755 0.8401 22 1 13.7405 8.0969 0.4164 23 1 12.5585 9.2603 -1.3529 24 6 3.9472 2.7188 0.7002 25 6 2.9387 3.8730 0.7931 26 6 2.5207 3.8861 2.2863 27 6 3.8427 3.5419 3.0175 28 6 4.5222 2.4990 2.1028 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.2966 2.6814 -1.8451 35 1 4.4927 1.3176 -1.9419 36 1 6.2249 1.3141 0.3604 37 1 7.9014 4.1231 1.2626 38 1 7.0332 4.9767 -0.0358 39 1 9.1486 5.1827 -1.3137 40 1 10.0162 4.3289 -0.0149 41 1 9.3769 6.1136 1.5841 42 1 8.5095 6.9667 0.2849 43 1 9.4049 8.3313 1.8043 44 1 3.4115 4.8166 0.5203 45 1 2.0757 3.6787 0.1562 46 1 1.7628 3.1274 2.4815 47 1 2.1622 4.8724 2.5809 48 1 3.6357 3.1121 3.9976 49 1 4.4677 4.4297 3.1136 50 1 4.2918 1.4912 2.4482 51 1 5.6009 2.6550 2.0940 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174029686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:31 Heat of formation + Delta-G solvation = -152.973831 kcal Electronic energy + Delta-G solvation = -29576.750568 eV Core-core repulsion = 25601.733024 eV Total energy + Delta-G solvation = -3975.017544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.77242 -38.28007 -38.07717 -37.14829 -36.78617 -36.44409 -34.24690 -33.48659 -31.54687 -29.60645 -29.32782 -27.78847 -25.51042 -25.38557 -23.65300 -22.91348 -22.71895 -21.45331 -20.39525 -19.79319 -19.14331 -18.60753 -17.58911 -17.33962 -17.23415 -16.86036 -16.68778 -16.37429 -15.89740 -15.67079 -15.60916 -15.30982 -14.65064 -14.37480 -14.13186 -14.03153 -13.93414 -13.86515 -13.63618 -13.31882 -13.26091 -13.20731 -13.13145 -13.00828 -12.90245 -12.61008 -12.56275 -12.33749 -12.23675 -11.95780 -11.94450 -11.89950 -11.85777 -11.69590 -11.67162 -11.44010 -11.38122 -11.14372 -10.71870 -10.56361 -10.34175 -10.23640 -8.71202 -6.42220 -0.84320 1.52487 1.60309 1.64369 1.79897 2.54566 2.64931 2.75107 3.12835 3.13987 3.32027 3.46179 3.56847 3.67982 3.75636 3.80134 3.96716 4.05746 4.11923 4.22541 4.23390 4.34004 4.36204 4.42269 4.50734 4.53058 4.58786 4.67659 4.73128 4.79515 4.85961 4.87362 4.89012 4.99161 5.02150 5.07029 5.11040 5.14444 5.22118 5.26064 5.27331 5.31646 5.35308 5.37084 5.46890 5.52762 5.95106 5.99780 6.15885 6.37958 6.55339 7.38584 8.70280 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.002560 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.871708 B =10936.452689 C =11954.487384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.049 3.951 3 O -0.380 6.380 4 C 0.080 3.920 5 H 0.098 0.902 6 C -0.165 4.165 7 C 0.127 3.873 8 H 0.110 0.890 9 N -1.087 6.087 10 S 2.633 3.367 11 O -0.985 6.985 12 O -0.989 6.989 13 C -0.612 4.612 14 C -0.099 4.099 15 C 0.016 3.984 16 C -0.629 4.629 17 H 0.051 0.949 18 C -0.037 4.037 19 N -0.935 5.935 20 Si 1.115 2.885 21 H -0.282 1.282 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.079 4.079 25 C -0.097 4.097 26 C -0.116 4.116 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.426 0.574 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.000 1.000 42 H 0.001 0.999 43 H 0.258 0.742 44 H 0.069 0.931 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.317 -18.359 0.089 28.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.028 4.028 3 O -0.299 6.299 4 C 0.022 3.978 5 H 0.116 0.884 6 C -0.205 4.205 7 C 0.019 3.981 8 H 0.128 0.872 9 N -0.846 5.846 10 S 2.727 3.273 11 O -0.975 6.975 12 O -0.979 6.979 13 C -0.742 4.742 14 C -0.139 4.139 15 C -0.022 4.022 16 C -0.667 4.667 17 H 0.069 0.931 18 C -0.235 4.235 19 N -0.572 5.572 20 Si 0.936 3.064 21 H -0.207 1.207 22 H -0.195 1.195 23 H -0.194 1.194 24 C -0.081 4.081 25 C -0.135 4.135 26 C -0.153 4.153 27 C -0.165 4.165 28 C -0.155 4.155 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.120 0.880 35 H 0.094 0.906 36 H 0.263 0.737 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.018 0.982 42 H 0.019 0.981 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.094 0.906 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.935 -17.174 -0.434 26.316 hybrid contribution -1.029 -1.325 0.515 1.755 sum -20.964 -18.499 0.080 27.959 Atomic orbital electron populations 1.21741 0.93166 1.03060 1.02612 1.22659 0.96167 0.83499 1.00441 1.87929 1.20412 1.27032 1.94506 1.23712 0.81327 0.97334 0.95416 0.88425 1.24032 0.98180 1.00688 0.97565 1.21637 0.82959 0.96349 0.97145 0.87171 1.55125 1.20131 1.36644 1.72709 1.04189 0.72527 0.76018 0.74526 1.93552 1.84721 1.86745 1.32460 1.93546 1.60493 1.60061 1.83788 1.30541 1.06948 1.20909 1.15806 1.21179 0.93793 0.98186 1.00704 1.19117 0.95861 0.92504 0.94747 1.22563 1.08201 1.08628 1.27280 0.93066 1.27407 1.06374 0.95909 0.93799 1.70922 1.13720 1.41457 1.31122 0.82963 0.71307 0.75573 0.76557 1.20708 1.19452 1.19425 1.22632 0.94730 0.96375 0.94366 1.21992 0.97874 0.96016 0.97578 1.22439 0.97130 1.01429 0.94338 1.22418 0.96692 0.98766 0.98671 1.22113 1.00515 1.00016 0.92880 0.92409 0.89695 0.92282 0.93120 0.92782 0.87978 0.90575 0.73692 0.83437 0.83671 0.91581 0.91628 0.98194 0.98118 0.93294 0.91232 0.90438 0.91417 0.91461 0.91211 0.92170 0.90642 0.90878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.59 6.50 71.98 0.47 1.05 16 3 O -0.38 -6.08 9.00 -148.98 -1.34 -7.42 16 4 C 0.08 1.19 3.58 31.01 0.11 1.30 16 5 H 0.10 1.21 7.84 -2.38 -0.02 1.19 16 6 C -0.16 -2.77 7.56 31.31 0.24 -2.54 16 7 C 0.13 2.25 3.78 45.31 0.17 2.42 16 8 H 0.11 1.92 7.59 -2.39 -0.02 1.90 16 9 N -1.09 -20.33 4.52 -168.07 -0.76 -21.09 16 10 S 2.63 71.80 5.41 -56.49 -0.31 71.49 16 11 O -0.98 -33.01 17.82 -127.65 -2.27 -35.29 16 12 O -0.99 -32.77 18.08 -127.65 -2.31 -35.08 16 13 C -0.61 -17.61 6.07 71.98 0.44 -17.18 16 14 C -0.10 -4.01 5.16 30.59 0.16 -3.85 16 15 C 0.02 0.81 4.28 29.85 0.13 0.94 16 16 C -0.63 -36.10 9.11 25.60 0.23 -35.87 16 17 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 18 C -0.04 -2.15 5.46 84.66 0.46 -1.69 16 19 N -0.94 -57.52 13.65 21.45 0.29 -57.22 16 20 Si 1.12 50.38 29.90 68.60 2.05 52.43 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 C -0.08 -1.23 1.06 -51.92 -0.06 -1.28 16 25 C -0.10 -1.56 5.73 31.49 0.18 -1.38 16 26 C -0.12 -1.77 6.91 31.97 0.22 -1.55 16 27 C -0.13 -2.00 6.84 31.76 0.22 -1.78 16 28 C -0.12 -1.75 5.80 31.15 0.18 -1.57 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.43 6.19 8.37 -96.75 -0.81 5.38 16 37 H 0.15 3.69 8.14 -2.39 -0.02 3.67 16 38 H 0.15 3.62 7.79 -2.39 -0.02 3.60 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 41 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 42 H 0.00 0.03 8.01 -2.39 -0.02 0.01 16 43 H 0.26 15.83 7.22 -92.71 -0.67 15.16 16 44 H 0.07 1.13 8.03 -2.38 -0.02 1.11 16 45 H 0.08 1.31 7.08 -2.39 -0.02 1.29 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 0.97 7.90 -2.39 -0.02 0.95 16 51 H 0.07 1.10 7.04 -2.39 -0.02 1.08 16 Total: -1.00 -75.26 414.46 -0.57 -75.83 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: 0.18 Total: 20.08 kcal Atomic # 6 Polarization: -67.62 SS G_CDS: 3.89 Total: -63.73 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -0.47 Total: -78.31 kcal Atomic # 8 Polarization: -71.87 SS G_CDS: -5.92 Total: -77.79 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Atomic # 16 Polarization: 71.80 SS G_CDS: -0.31 Total: 71.49 kcal Total: -75.26 -0.57 -75.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174029686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.144 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds