Wall clock time and date at job start Wed Apr 1 2020 05:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47223 * 2 1 4 4 C 1.42898 * 113.99891 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.88214 * 18.68627 * 4 3 2 6 6 C 1.53919 * 113.65148 * 247.25610 * 4 3 2 7 7 C 1.53924 * 87.22200 * 270.37208 * 6 4 3 8 8 H 1.09004 * 113.73410 * 89.63994 * 7 6 4 9 9 N 1.46503 * 113.65112 * 220.64597 * 7 6 4 10 10 S 1.65600 * 120.00062 * 242.26266 * 9 7 6 11 11 O 1.42098 * 104.27576 * 308.92781 * 10 9 7 12 12 O 1.42102 * 104.27841 * 181.06908 * 10 9 7 13 13 C 1.81400 * 104.45288 * 64.99919 * 10 9 7 14 14 C 1.52992 * 109.47583 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.53013 * 86.85631 * 335.13549 * 7 6 4 25 25 C 1.53567 * 115.12849 * 268.16942 * 24 7 6 26 26 C 1.55068 * 103.98364 * 206.87340 * 25 24 7 27 27 C 1.54955 * 102.85849 * 37.29441 * 26 25 24 28 28 C 1.53169 * 115.37464 * 142.15559 * 24 7 6 29 29 H 1.08999 * 109.47183 * 59.99622 * 1 2 3 30 30 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46698 * 300.00155 * 1 2 3 32 32 H 1.08999 * 109.47076 * 239.99470 * 2 1 3 33 33 H 1.09002 * 109.47319 * 119.99620 * 2 1 3 34 34 H 1.08991 * 113.59579 * 155.78712 * 6 4 3 35 35 H 1.08995 * 113.59257 * 24.95150 * 6 4 3 36 36 H 0.97003 * 119.99958 * 62.26147 * 9 7 6 37 37 H 1.09002 * 109.47172 * 59.99879 * 13 10 9 38 38 H 1.09001 * 109.46713 * 300.00132 * 13 10 9 39 39 H 1.09002 * 109.47103 * 59.99669 * 14 13 10 40 40 H 1.08998 * 109.46862 * 300.00481 * 14 13 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 43 43 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.52237 * 325.49431 * 25 24 7 45 45 H 1.08997 * 110.52846 * 88.24642 * 25 24 7 46 46 H 1.09000 * 110.73100 * 278.95553 * 26 25 24 47 47 H 1.08999 * 110.89137 * 155.70632 * 26 25 24 48 48 H 1.09002 * 110.47886 * 203.76238 * 27 26 25 49 49 H 1.09000 * 110.47936 * 81.13570 * 27 26 25 50 50 H 1.08998 * 110.09343 * 248.85292 * 28 24 7 51 51 H 1.09002 * 110.08894 * 10.38863 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9283 0.5452 -0.3227 6 6 4.0040 2.0520 1.2995 7 6 3.8548 3.4376 0.6461 8 1 2.8872 3.9060 0.8267 9 7 4.9810 4.3365 0.9108 10 16 4.7358 5.7491 1.7395 11 8 3.6527 6.3701 1.0609 12 8 6.0192 6.3577 1.7821 13 6 4.2276 5.2186 3.3981 14 6 3.9678 6.4487 4.2698 15 6 3.5385 6.0013 5.6685 16 6 3.2831 7.2130 6.5273 17 1 3.4136 8.2033 6.1165 18 6 2.8820 7.0575 7.8372 19 7 2.6587 8.1150 8.5865 20 14 2.6558 5.3447 8.5476 21 1 3.9348 4.8837 9.1450 22 1 1.6039 5.3784 9.5953 23 1 2.2489 4.4105 7.4674 24 6 3.9468 2.7188 -0.7015 25 6 5.3628 2.6056 -1.2850 26 6 5.1316 2.5209 -2.8160 27 6 3.9426 3.4892 -3.0393 28 6 3.0400 3.2732 -1.8044 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0391 1.7682 1.4890 35 1 3.3592 1.9068 2.1663 36 1 5.8702 4.1042 0.6005 37 1 5.0186 4.6165 3.8452 38 1 3.3159 4.6255 3.3263 39 1 3.1766 7.0505 3.8225 40 1 4.8791 7.0423 4.3415 41 1 4.3293 5.3993 6.1161 42 1 2.6269 5.4080 5.5963 43 1 2.3769 8.0055 9.5082 44 1 5.9505 3.4890 -1.0356 45 1 5.8547 1.7031 -0.9222 46 1 4.8634 1.5062 -3.1101 47 1 6.0125 2.8593 -3.3614 48 1 3.4071 3.2311 -3.9529 49 1 4.2931 4.5205 -3.0799 50 1 2.2523 2.5567 -2.0371 51 1 2.6029 4.2206 -1.4888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174029699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:37 Heat of formation + Delta-G solvation = -119.262046 kcal Electronic energy + Delta-G solvation = -29574.013430 eV Core-core repulsion = 25600.457738 eV Total energy + Delta-G solvation = -3973.555692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.09853 -37.55104 -36.90359 -35.77779 -35.55143 -34.79292 -32.89715 -32.20265 -30.91931 -29.07207 -28.36801 -27.18398 -24.44485 -23.58431 -23.25947 -22.13618 -20.96173 -20.43381 -19.19230 -19.02099 -17.57740 -17.35987 -16.86126 -16.44117 -16.14709 -15.86526 -15.68727 -15.49054 -14.77182 -14.27441 -14.19365 -14.07397 -13.73031 -13.60148 -13.44436 -13.09643 -12.91294 -12.64302 -12.36444 -12.18430 -12.15058 -12.08219 -11.89580 -11.83588 -11.70541 -11.68035 -11.52669 -11.35670 -11.27870 -11.09699 -11.03134 -10.94891 -10.93285 -10.78070 -10.35536 -10.08001 -9.87012 -9.75141 -9.69490 -9.32429 -9.21929 -8.58007 -6.07660 -4.06758 0.42993 2.81156 3.14824 3.26931 3.34471 3.36759 3.90991 4.05550 4.12121 4.29937 4.37025 4.41006 4.44395 4.57927 4.72496 4.74909 4.81278 4.92294 4.94188 5.01730 5.02503 5.11064 5.20160 5.21366 5.26086 5.29213 5.34390 5.40751 5.44181 5.51635 5.57168 5.64292 5.65467 5.77839 5.80135 5.82648 5.88747 5.94163 6.01926 6.11969 6.15932 6.19765 6.28617 6.68484 6.86826 6.93226 7.13965 7.28070 7.72065 8.48688 8.97005 9.53544 11.05721 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.003008 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.135454 B = 9306.940298 C =10977.767131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.078 3.922 5 H 0.078 0.922 6 C -0.176 4.176 7 C 0.143 3.857 8 H 0.123 0.877 9 N -1.111 6.111 10 S 2.599 3.401 11 O -0.958 6.958 12 O -0.963 6.963 13 C -0.614 4.614 14 C -0.098 4.098 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.083 4.083 25 C -0.103 4.103 26 C -0.122 4.122 27 C -0.127 4.127 28 C -0.108 4.108 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.015 0.985 42 H 0.020 0.980 43 H 0.264 0.736 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.063 0.937 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 -20.446 -23.492 31.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.019 3.981 5 H 0.096 0.904 6 C -0.216 4.216 7 C 0.035 3.965 8 H 0.140 0.860 9 N -0.868 5.868 10 S 2.694 3.306 11 O -0.948 6.948 12 O -0.954 6.954 13 C -0.746 4.746 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.190 1.190 24 C -0.086 4.086 25 C -0.141 4.141 26 C -0.160 4.160 27 C -0.164 4.164 28 C -0.146 4.146 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.250 0.750 37 H 0.147 0.853 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.242 -19.281 -23.627 30.578 hybrid contribution 0.245 -1.773 0.980 2.040 sum 2.487 -21.054 -22.647 31.022 Atomic orbital electron populations 1.21753 0.93594 1.02254 1.03413 1.22535 0.95684 0.83686 0.99988 1.87904 1.19300 1.26332 1.94388 1.22845 0.81865 0.97211 0.96157 0.90359 1.24103 1.02349 0.96659 0.98514 1.22272 0.89870 0.88910 0.95453 0.85952 1.55781 1.16784 1.41475 1.72732 1.05330 0.74586 0.73454 0.77204 1.93584 1.56763 1.73347 1.71093 1.93583 1.40425 1.73957 1.87392 1.30612 1.12119 1.10684 1.21182 1.21308 1.02296 0.92488 0.97605 1.19525 0.96179 0.97618 0.90941 1.21144 1.46112 0.93313 0.95890 0.90725 1.25025 0.94711 0.96720 0.96963 1.69913 1.46855 1.29059 1.08097 0.86775 0.78158 0.85304 0.79027 1.20244 1.21272 1.19035 1.22568 0.96434 0.94826 0.94737 1.22107 0.94361 1.02185 0.95459 1.22508 0.98454 0.99646 0.95390 1.22427 0.96360 0.99634 0.98000 1.21950 0.97573 1.01628 0.93448 0.91788 0.91161 0.91586 0.93442 0.93294 0.88489 0.89816 0.75033 0.85311 0.85497 0.90980 0.91044 0.96645 0.96173 0.92635 0.90314 0.91224 0.91670 0.91497 0.91847 0.91532 0.90705 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.40 6.50 37.16 0.24 0.64 16 3 O -0.36 -3.29 9.10 -35.23 -0.32 -3.61 16 4 C 0.08 0.61 3.76 -26.23 -0.10 0.52 16 5 H 0.08 0.50 7.76 -51.93 -0.40 0.09 16 6 C -0.18 -1.42 7.54 -25.78 -0.19 -1.62 16 7 C 0.14 1.40 3.69 -67.44 -0.25 1.15 16 8 H 0.12 1.35 7.73 -51.93 -0.40 0.95 16 9 N -1.11 -11.48 5.39 -4.47 -0.02 -11.50 16 10 S 2.60 37.35 5.43 -107.50 -0.58 36.76 16 11 O -0.96 -16.73 17.58 -57.54 -1.01 -17.74 16 12 O -0.96 -16.64 18.08 -57.54 -1.04 -17.68 16 13 C -0.61 -8.98 6.07 37.15 0.23 -8.75 16 14 C -0.10 -1.93 5.16 -26.74 -0.14 -2.06 16 15 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -15.10 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 20 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 24 C -0.08 -0.70 1.08 -154.11 -0.17 -0.87 16 25 C -0.10 -0.72 5.64 -25.34 -0.14 -0.87 16 26 C -0.12 -0.82 6.91 -24.61 -0.17 -0.99 16 27 C -0.13 -1.01 6.84 -24.93 -0.17 -1.18 16 28 C -0.11 -1.00 6.06 -25.87 -0.16 -1.16 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.41 3.47 6.69 -34.47 -0.23 3.24 16 37 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.13 1.62 8.14 -51.92 -0.42 1.20 16 39 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.09 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.08 0.57 6.05 -51.93 -0.31 0.26 16 45 H 0.07 0.39 7.88 -51.93 -0.41 -0.02 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.69 7.19 -51.93 -0.37 0.31 16 51 H 0.07 0.79 7.90 -51.93 -0.41 0.38 16 LS Contribution 410.85 15.07 6.19 6.19 Total: -1.00 -35.72 410.85 -11.10 -46.82 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -9.24 Total: 0.57 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: -1.18 Total: -29.56 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.75 Total: -38.60 kcal Atomic # 8 Polarization: -36.66 SS G_CDS: -2.37 Total: -39.03 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 16 Polarization: 37.35 SS G_CDS: -0.58 Total: 36.76 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.72 -11.10 -46.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174029699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.441 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds