Wall clock time and date at job start Wed Apr 1 2020 05:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47223 * 2 1 4 4 C 1.42898 * 113.99891 * 180.02562 * 3 2 1 5 5 H 1.08996 * 112.88214 * 18.68627 * 4 3 2 6 6 C 1.53919 * 113.65148 * 247.25610 * 4 3 2 7 7 C 1.53924 * 87.22200 * 270.37208 * 6 4 3 8 8 H 1.09004 * 113.73410 * 89.63994 * 7 6 4 9 9 N 1.46503 * 113.65112 * 220.64597 * 7 6 4 10 10 S 1.65600 * 120.00062 * 242.26266 * 9 7 6 11 11 O 1.42098 * 104.27576 * 308.92781 * 10 9 7 12 12 O 1.42102 * 104.27841 * 181.06908 * 10 9 7 13 13 C 1.81400 * 104.45288 * 64.99919 * 10 9 7 14 14 C 1.52992 * 109.47583 * 180.02562 * 13 10 9 15 15 C 1.52997 * 109.47482 * 179.97438 * 14 13 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.53013 * 86.85631 * 335.13549 * 7 6 4 25 25 C 1.53567 * 115.12849 * 268.16942 * 24 7 6 26 26 C 1.55068 * 103.98364 * 206.87340 * 25 24 7 27 27 C 1.54955 * 102.85849 * 37.29441 * 26 25 24 28 28 C 1.53169 * 115.37464 * 142.15559 * 24 7 6 29 29 H 1.08999 * 109.47183 * 59.99622 * 1 2 3 30 30 H 1.08996 * 109.46838 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46698 * 300.00155 * 1 2 3 32 32 H 1.08999 * 109.47076 * 239.99470 * 2 1 3 33 33 H 1.09002 * 109.47319 * 119.99620 * 2 1 3 34 34 H 1.08991 * 113.59579 * 155.78712 * 6 4 3 35 35 H 1.08995 * 113.59257 * 24.95150 * 6 4 3 36 36 H 0.97003 * 119.99958 * 62.26147 * 9 7 6 37 37 H 1.09002 * 109.47172 * 59.99879 * 13 10 9 38 38 H 1.09001 * 109.46713 * 300.00132 * 13 10 9 39 39 H 1.09002 * 109.47103 * 59.99669 * 14 13 10 40 40 H 1.08998 * 109.46862 * 300.00481 * 14 13 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 15 14 13 42 42 H 1.09001 * 109.46832 * 299.99974 * 15 14 13 43 43 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 44 44 H 1.08995 * 110.52237 * 325.49431 * 25 24 7 45 45 H 1.08997 * 110.52846 * 88.24642 * 25 24 7 46 46 H 1.09000 * 110.73100 * 278.95553 * 26 25 24 47 47 H 1.08999 * 110.89137 * 155.70632 * 26 25 24 48 48 H 1.09002 * 110.47886 * 203.76238 * 27 26 25 49 49 H 1.09000 * 110.47936 * 81.13570 * 27 26 25 50 50 H 1.08998 * 110.09343 * 248.85292 * 28 24 7 51 51 H 1.09002 * 110.08894 * 10.38863 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 1 3.9283 0.5452 -0.3227 6 6 4.0040 2.0520 1.2995 7 6 3.8548 3.4376 0.6461 8 1 2.8872 3.9060 0.8267 9 7 4.9810 4.3365 0.9108 10 16 4.7358 5.7491 1.7395 11 8 3.6527 6.3701 1.0609 12 8 6.0192 6.3577 1.7821 13 6 4.2276 5.2186 3.3981 14 6 3.9678 6.4487 4.2698 15 6 3.5385 6.0013 5.6685 16 6 3.2831 7.2130 6.5273 17 1 3.4136 8.2033 6.1165 18 6 2.8820 7.0575 7.8372 19 7 2.6587 8.1150 8.5865 20 14 2.6558 5.3447 8.5476 21 1 3.9348 4.8837 9.1450 22 1 1.6039 5.3784 9.5953 23 1 2.2489 4.4105 7.4674 24 6 3.9468 2.7188 -0.7015 25 6 5.3628 2.6056 -1.2850 26 6 5.1316 2.5209 -2.8160 27 6 3.9426 3.4892 -3.0393 28 6 3.0400 3.2732 -1.8044 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 5.0391 1.7682 1.4890 35 1 3.3592 1.9068 2.1663 36 1 5.8702 4.1042 0.6005 37 1 5.0186 4.6165 3.8452 38 1 3.3159 4.6255 3.3263 39 1 3.1766 7.0505 3.8225 40 1 4.8791 7.0423 4.3415 41 1 4.3293 5.3993 6.1161 42 1 2.6269 5.4080 5.5963 43 1 2.3769 8.0055 9.5082 44 1 5.9505 3.4890 -1.0356 45 1 5.8547 1.7031 -0.9222 46 1 4.8634 1.5062 -3.1101 47 1 6.0125 2.8593 -3.3614 48 1 3.4071 3.2311 -3.9529 49 1 4.2931 4.5205 -3.0799 50 1 2.2523 2.5567 -2.0371 51 1 2.6029 4.2206 -1.4888 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174029699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:36 Heat of formation + Delta-G solvation = -144.188088 kcal Electronic energy + Delta-G solvation = -29575.094304 eV Core-core repulsion = 25600.457738 eV Total energy + Delta-G solvation = -3974.636566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.73583 -38.21714 -38.10590 -37.06418 -36.52198 -36.24187 -34.26124 -33.63929 -31.47993 -30.17283 -29.67548 -27.78794 -25.40703 -25.13982 -23.76502 -22.71395 -22.29851 -21.51715 -20.30038 -19.70593 -18.98694 -18.57092 -18.13610 -17.23692 -17.14503 -16.70476 -16.65912 -16.24337 -16.16604 -15.85287 -15.31233 -14.88757 -14.73077 -14.33105 -14.30490 -14.10044 -14.05585 -13.75622 -13.65528 -13.26165 -13.24390 -13.20273 -13.14222 -12.86395 -12.72108 -12.70364 -12.56715 -12.47869 -12.22618 -11.91468 -11.88008 -11.85623 -11.72389 -11.65896 -11.59611 -11.42434 -11.38755 -11.25512 -10.98893 -10.78409 -10.28328 -10.20136 -8.30826 -6.36909 -0.74911 1.35816 1.38822 1.50501 1.77418 2.35723 2.61353 2.74830 3.04264 3.21532 3.40139 3.53698 3.67887 3.71571 3.78675 3.90459 3.97671 4.13850 4.22573 4.26085 4.31907 4.34706 4.41125 4.52229 4.56914 4.59714 4.60751 4.67169 4.74610 4.83310 4.85197 4.90955 4.94897 4.98846 5.04979 5.09782 5.11739 5.20769 5.25880 5.28467 5.32154 5.32612 5.39624 5.44473 5.45159 5.53738 5.61462 6.12326 6.24311 6.40839 6.71240 7.27731 8.86327 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.003008 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.135454 B = 9306.940298 C =10977.767131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.384 6.384 4 C 0.081 3.919 5 H 0.102 0.898 6 C -0.168 4.168 7 C 0.126 3.874 8 H 0.104 0.896 9 N -1.091 6.091 10 S 2.618 3.382 11 O -0.995 6.995 12 O -0.994 6.994 13 C -0.608 4.608 14 C -0.104 4.104 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.029 0.971 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.956 3.044 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.239 1.239 24 C -0.083 4.083 25 C -0.104 4.104 26 C -0.118 4.118 27 C -0.129 4.129 28 C -0.111 4.111 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.426 0.574 37 H 0.159 0.841 38 H 0.149 0.851 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.267 0.733 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.073 0.927 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -24.939 -24.179 34.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.303 6.303 4 C 0.022 3.978 5 H 0.120 0.880 6 C -0.208 4.208 7 C 0.018 3.982 8 H 0.122 0.878 9 N -0.853 5.853 10 S 2.714 3.286 11 O -0.985 6.985 12 O -0.984 6.984 13 C -0.739 4.739 14 C -0.143 4.143 15 C -0.042 4.042 16 C -0.583 4.583 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.188 1.188 22 H -0.211 1.211 23 H -0.162 1.162 24 C -0.085 4.085 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.167 4.167 28 C -0.148 4.148 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.137 0.863 35 H 0.100 0.900 36 H 0.265 0.735 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.259 -23.770 -24.345 34.180 hybrid contribution -0.115 -0.274 1.122 1.160 sum 3.143 -24.043 -23.223 33.575 Atomic orbital electron populations 1.21776 0.93726 1.03122 1.02422 1.22679 0.95674 0.82929 1.01023 1.87891 1.20184 1.27780 1.94475 1.22885 0.81529 0.97636 0.95704 0.87985 1.24122 1.03659 0.94566 0.98411 1.22479 0.88740 0.89501 0.97436 0.87792 1.55324 1.17805 1.40316 1.71842 1.04471 0.73184 0.73839 0.77100 1.93542 1.57962 1.74935 1.72021 1.93536 1.41613 1.75432 1.87842 1.30512 1.14443 1.08807 1.20132 1.21179 1.01577 0.94739 0.96829 1.19492 0.97179 0.95555 0.91995 1.21562 1.46063 0.93616 0.97073 0.95284 1.26126 0.94171 1.01958 0.97354 1.70087 1.48326 1.32176 1.08715 0.85580 0.78644 0.79286 0.78679 1.18800 1.21086 1.16200 1.22628 0.97277 0.94978 0.93616 1.22167 0.93308 1.03140 0.95539 1.22506 0.97891 0.99771 0.95357 1.22442 0.97001 0.99503 0.97738 1.21932 0.98055 1.00277 0.94572 0.92470 0.89385 0.92866 0.92063 0.92464 0.86253 0.90040 0.73493 0.82320 0.83239 0.92147 0.91862 0.94952 0.95051 0.92401 0.90746 0.88850 0.90458 0.90727 0.91180 0.92805 0.90838 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.00 16 2 C 0.05 0.61 6.50 71.98 0.47 1.07 16 3 O -0.38 -6.29 9.10 -148.98 -1.36 -7.64 16 4 C 0.08 1.03 3.76 30.92 0.12 1.14 16 5 H 0.10 0.83 7.76 -2.39 -0.02 0.81 16 6 C -0.17 -2.13 7.54 31.21 0.24 -1.90 16 7 C 0.13 2.25 3.69 45.31 0.17 2.42 16 8 H 0.10 2.26 7.73 -2.39 -0.02 2.25 16 9 N -1.09 -20.63 5.39 -168.06 -0.91 -21.54 16 10 S 2.62 73.72 5.43 -56.49 -0.31 73.41 16 11 O -0.99 -35.46 17.58 -127.65 -2.24 -37.71 16 12 O -0.99 -33.98 18.08 -127.65 -2.31 -36.29 16 13 C -0.61 -16.51 6.07 71.98 0.44 -16.08 16 14 C -0.10 -4.08 5.16 30.59 0.16 -3.93 16 15 C 0.00 -0.17 4.04 29.85 0.12 -0.05 16 16 C -0.55 -32.04 9.66 25.60 0.25 -31.80 16 17 H 0.03 1.89 7.99 -2.91 -0.02 1.87 16 18 C 0.00 0.03 5.47 84.66 0.46 0.50 16 19 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 20 Si 0.96 43.50 27.47 68.60 1.88 45.38 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 22 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.24 -9.77 6.54 99.48 0.65 -9.12 16 24 C -0.08 -1.23 1.08 -51.92 -0.06 -1.28 16 25 C -0.10 -1.14 5.64 31.49 0.18 -0.96 16 26 C -0.12 -1.27 6.91 31.97 0.22 -1.05 16 27 C -0.13 -1.95 6.84 31.76 0.22 -1.73 16 28 C -0.11 -2.00 6.06 31.15 0.19 -1.81 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.43 6.13 6.69 -96.74 -0.65 5.48 16 37 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 39 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 42 H 0.03 1.37 7.20 -2.39 -0.02 1.35 16 43 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 44 H 0.07 0.88 6.05 -2.39 -0.01 0.87 16 45 H 0.09 0.62 7.88 -2.39 -0.02 0.60 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.31 7.19 -2.39 -0.02 1.30 16 51 H 0.05 1.06 7.90 -2.39 -0.02 1.04 16 Total: -1.00 -80.31 410.85 -0.84 -81.15 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.19 Total: 20.07 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 3.90 Total: -56.45 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -0.61 Total: -81.92 kcal Atomic # 8 Polarization: -75.73 SS G_CDS: -5.91 Total: -81.64 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.88 Total: 45.38 kcal Atomic # 16 Polarization: 73.72 SS G_CDS: -0.31 Total: 73.41 kcal Total: -80.31 -0.84 -81.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174029699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.037 kcal (2) G-P(sol) polarization free energy of solvation -80.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds