Wall clock time and date at job start Wed Apr 1 2020 05:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.46928 * 2 1 4 4 C 1.42899 * 113.99678 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.88025 * 341.31392 * 4 3 2 6 6 C 1.54115 * 113.79211 * 112.63466 * 4 3 2 7 7 C 1.53911 * 87.15847 * 139.30774 * 6 4 3 8 8 H 1.09000 * 113.65007 * 89.75189 * 7 6 4 9 9 N 1.46495 * 113.65350 * 220.68055 * 7 6 4 10 10 S 1.65598 * 120.00276 * 244.02223 * 9 7 6 11 11 O 1.42103 * 104.28061 * 308.93064 * 10 9 7 12 12 O 1.42095 * 104.28020 * 181.07021 * 10 9 7 13 13 C 1.81401 * 104.44820 * 64.99762 * 10 9 7 14 14 C 1.53000 * 109.47337 * 179.97438 * 13 10 9 15 15 C 1.53001 * 109.47355 * 180.02562 * 14 13 10 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.53017 * 86.95723 * 335.21586 * 7 6 4 25 25 C 1.53562 * 115.12976 * 268.12244 * 24 7 6 26 26 C 1.55062 * 103.98274 * 206.87081 * 25 24 7 27 27 C 1.54950 * 102.86074 * 37.29691 * 26 25 24 28 28 C 1.53172 * 115.37669 * 142.10543 * 24 7 6 29 29 H 1.08995 * 109.47063 * 60.00122 * 1 2 3 30 30 H 1.09002 * 109.46839 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46956 * 299.99887 * 1 2 3 32 32 H 1.09003 * 109.47181 * 239.99609 * 2 1 3 33 33 H 1.09005 * 109.47119 * 120.00070 * 2 1 3 34 34 H 1.08999 * 113.58774 * 24.75118 * 6 4 3 35 35 H 1.08995 * 113.64973 * 253.87622 * 6 4 3 36 36 H 0.97001 * 120.00549 * 64.02423 * 9 7 6 37 37 H 1.09002 * 109.46826 * 60.00375 * 13 10 9 38 38 H 1.08992 * 109.47611 * 300.00359 * 13 10 9 39 39 H 1.09002 * 109.46807 * 60.00423 * 14 13 10 40 40 H 1.08998 * 109.47285 * 300.00025 * 14 13 10 41 41 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 42 42 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.52593 * 325.49296 * 25 24 7 45 45 H 1.08995 * 110.52624 * 88.24767 * 25 24 7 46 46 H 1.08996 * 110.73674 * 278.94758 * 26 25 24 47 47 H 1.09001 * 110.73414 * 155.63627 * 26 25 24 48 48 H 1.09004 * 110.47863 * 203.75998 * 27 26 25 49 49 H 1.09003 * 110.48535 * 81.13598 * 27 26 25 50 50 H 1.08993 * 110.09482 * 248.85653 * 28 24 7 51 51 H 1.09006 * 110.08755 * 10.39073 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9283 0.5453 0.3227 6 6 4.0083 2.0500 -1.3008 7 6 4.9838 2.8469 -0.4164 8 1 5.9162 2.3212 -0.2101 9 7 5.1946 4.2246 -0.8674 10 16 6.6938 4.7087 -1.3777 11 8 7.5669 4.3074 -0.3308 12 8 6.5261 6.0809 -1.7062 13 6 7.0011 3.7291 -2.8732 14 6 8.3728 4.0902 -3.4466 15 6 8.6317 3.2644 -4.7084 16 6 9.9830 3.6197 -5.2728 17 1 10.5962 4.3601 -4.7806 18 6 10.4367 2.9994 -6.4176 19 7 9.6902 2.0974 -7.0167 20 14 12.1115 3.4404 -7.1176 21 1 12.3628 2.6387 -8.3422 22 1 12.1413 4.8857 -7.4568 23 1 13.1620 3.1466 -6.1101 24 6 3.9468 2.7189 0.7014 25 6 2.9389 3.8739 0.7913 26 6 2.5178 3.8885 2.2836 27 6 3.8381 3.5440 3.0179 28 6 4.5186 2.4997 2.1054 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.3028 2.6766 -1.8464 35 1 4.4985 1.3119 -1.9356 36 1 4.4561 4.8535 -0.8672 37 1 6.2302 3.9443 -3.6132 38 1 6.9790 2.6683 -2.6237 39 1 9.1439 3.8752 -2.7068 40 1 8.3944 5.1509 -3.6964 41 1 7.8605 3.4797 -5.4481 42 1 8.6098 2.2035 -4.4590 43 1 10.0093 1.6614 -7.8223 44 1 3.4129 4.8169 0.5187 45 1 2.0770 3.6796 0.1530 46 1 1.7590 3.1307 2.4780 47 1 2.1612 4.8767 2.5743 48 1 3.6288 3.1153 3.9980 49 1 4.4637 4.4314 3.1145 50 1 4.2866 1.4924 2.4512 51 1 5.5977 2.6537 2.0984 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174029710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:41 Heat of formation + Delta-G solvation = -125.298777 kcal Electronic energy + Delta-G solvation = -29376.100908 eV Core-core repulsion = 25402.283444 eV Total energy + Delta-G solvation = -3973.817464 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.00514 -37.46546 -36.86996 -35.74816 -35.53754 -34.67024 -32.85819 -32.18862 -31.01152 -28.97966 -27.82549 -27.11217 -24.28424 -23.71614 -23.06100 -22.25169 -20.97276 -20.54119 -19.14534 -18.93787 -17.44441 -17.34422 -16.60999 -16.25137 -16.19341 -15.76640 -15.69235 -15.31924 -14.73674 -14.49510 -14.20624 -14.06074 -13.71935 -13.55890 -13.36702 -12.90007 -12.62504 -12.56844 -12.31495 -12.18237 -12.07453 -11.93357 -11.82054 -11.76771 -11.69604 -11.57649 -11.30314 -11.21284 -11.17713 -11.02575 -10.90171 -10.86958 -10.82857 -10.72733 -10.61399 -10.42048 -9.95077 -9.61363 -9.55893 -9.30638 -9.07006 -8.40906 -6.06171 -4.09209 0.47383 2.80615 3.31805 3.35604 3.38856 3.41195 3.94719 4.06950 4.16644 4.28064 4.40285 4.42057 4.50406 4.64573 4.74141 4.77151 4.83801 4.93941 5.02198 5.05144 5.11088 5.17885 5.24094 5.29675 5.30903 5.32587 5.41390 5.44726 5.53044 5.57483 5.69427 5.70195 5.74811 5.77450 5.87960 5.89239 5.90672 5.97709 6.10875 6.15761 6.20894 6.26750 6.44871 6.86294 6.90779 7.00173 7.56205 7.66407 7.91807 8.32428 8.96819 9.55428 11.05013 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014769 B = 0.002522 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.442260 B =11101.222110 C =12410.748893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.076 3.924 5 H 0.091 0.909 6 C -0.173 4.173 7 C 0.136 3.864 8 H 0.121 0.879 9 N -1.107 6.107 10 S 2.597 3.403 11 O -0.962 6.962 12 O -0.964 6.964 13 C -0.607 4.607 14 C -0.106 4.106 15 C 0.032 3.968 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.895 3.105 21 H -0.287 1.287 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.080 4.080 25 C -0.098 4.098 26 C -0.119 4.119 27 C -0.124 4.124 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.415 0.585 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.065 0.935 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.643 -3.474 18.393 27.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.284 6.284 4 C 0.018 3.982 5 H 0.109 0.891 6 C -0.213 4.213 7 C 0.028 3.972 8 H 0.138 0.862 9 N -0.864 5.864 10 S 2.693 3.307 11 O -0.952 6.952 12 O -0.954 6.954 13 C -0.739 4.739 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.722 3.278 21 H -0.212 1.212 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.082 4.082 25 C -0.136 4.136 26 C -0.156 4.156 27 C -0.162 4.162 28 C -0.153 4.153 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.084 0.916 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.082 -2.884 18.697 26.871 hybrid contribution 0.514 -0.432 -1.022 1.223 sum -18.569 -3.316 17.675 25.850 Atomic orbital electron populations 1.21737 0.93883 1.02154 1.03050 1.22513 0.95508 0.84139 1.00020 1.87932 1.20083 1.25911 1.94506 1.23457 0.81498 0.97130 0.96153 0.89128 1.24142 0.99188 1.00377 0.97595 1.21973 0.98283 0.81980 0.94968 0.86177 1.55691 1.30444 1.19082 1.81196 1.05392 0.73058 0.75177 0.77067 1.93570 1.64668 1.83997 1.52941 1.93578 1.84757 1.31300 1.85799 1.30558 1.09209 1.14832 1.19328 1.21502 0.89679 1.01937 1.01429 1.19051 0.96958 0.94695 0.89978 1.21222 1.02401 1.22984 1.09915 0.92426 1.25019 0.97562 0.94976 0.96795 1.69948 1.37346 1.26546 1.19618 0.86614 0.84217 0.78556 0.78400 1.21248 1.20107 1.20119 1.22624 0.95348 0.95773 0.94486 1.21950 0.97877 0.96426 0.97306 1.22467 0.97252 1.01130 0.94795 1.22386 0.96672 0.98974 0.98172 1.22119 1.00633 0.99295 0.93208 0.91846 0.91265 0.91978 0.93301 0.93511 0.88269 0.90122 0.74829 0.85253 0.85571 0.91603 0.91605 0.96129 0.96160 0.92846 0.91230 0.90170 0.91374 0.91851 0.91930 0.91570 0.91605 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.38 6.50 37.16 0.24 0.63 16 3 O -0.37 -3.24 9.01 -35.23 -0.32 -3.55 16 4 C 0.08 0.63 3.71 -26.13 -0.10 0.54 16 5 H 0.09 0.64 7.84 -51.93 -0.41 0.24 16 6 C -0.17 -1.51 7.57 -25.68 -0.19 -1.70 16 7 C 0.14 1.32 3.74 -67.45 -0.25 1.07 16 8 H 0.12 1.14 7.72 -51.93 -0.40 0.74 16 9 N -1.11 -11.95 5.42 -4.48 -0.02 -11.98 16 10 S 2.60 37.81 5.43 -107.50 -0.58 37.23 16 11 O -0.96 -16.60 17.57 -57.54 -1.01 -17.61 16 12 O -0.96 -16.99 18.08 -57.54 -1.04 -18.03 16 13 C -0.61 -9.22 6.07 37.16 0.23 -9.00 16 14 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 15 C 0.03 0.79 4.97 -27.89 -0.14 0.66 16 16 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -26.53 13.29 55.43 0.74 -25.80 16 20 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.08 -0.71 1.09 -154.10 -0.17 -0.88 16 25 C -0.10 -0.85 5.38 -25.35 -0.14 -0.99 16 26 C -0.12 -0.96 6.91 -24.61 -0.17 -1.13 16 27 C -0.12 -1.03 6.84 -24.93 -0.17 -1.20 16 28 C -0.11 -1.00 6.33 -25.87 -0.16 -1.16 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.42 3.90 6.62 -34.46 -0.23 3.68 16 37 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.13 1.68 8.14 -51.93 -0.42 1.25 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.54 8.14 -51.92 -0.42 0.11 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.07 0.60 6.02 -51.93 -0.31 0.29 16 45 H 0.08 0.72 7.08 -51.93 -0.37 0.36 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 51 H 0.07 0.71 7.90 -51.93 -0.41 0.30 16 LS Contribution 414.33 15.07 6.24 6.24 Total: -1.00 -34.60 414.33 -11.47 -46.07 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -9.27 Total: 0.42 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -1.19 Total: -29.56 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.71 Total: -37.77 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -2.37 Total: -39.19 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 37.81 SS G_CDS: -0.58 Total: 37.23 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.60 -11.47 -46.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174029710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.228 kcal (2) G-P(sol) polarization free energy of solvation -34.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds