Wall clock time and date at job start Wed Apr 1 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.46957 * 2 1 4 4 C 1.46501 * 119.99822 * 269.99930 * 3 2 1 5 5 C 1.50702 * 109.47506 * 269.99770 * 4 3 2 6 6 H 1.08009 * 119.99535 * 0.02562 * 5 4 3 7 7 C 1.37868 * 120.00106 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00358 * 0.02562 * 7 5 4 9 9 Si 1.86809 * 119.99917 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.46986 * 60.00450 * 9 7 5 11 11 H 1.48504 * 109.46882 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47017 * 300.00066 * 9 7 5 13 13 C 1.34779 * 119.99854 * 90.00683 * 3 2 1 14 14 O 1.21278 * 119.99831 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99755 * 359.97438 * 13 3 2 16 16 N 1.46901 * 109.46670 * 186.13042 * 15 13 3 17 17 C 1.46419 * 111.00116 * 63.14115 * 16 15 13 18 18 C 1.53373 * 108.67694 * 181.01746 * 17 16 15 19 19 H 1.08990 * 109.77201 * 308.54772 * 18 17 16 20 20 C 1.50703 * 109.76619 * 187.82069 * 18 17 16 21 21 N 1.34778 * 119.99526 * 180.02562 * 20 18 17 22 22 O 1.21274 * 119.99911 * 0.02562 * 20 18 17 23 23 C 1.53051 * 107.94364 * 68.16091 * 18 17 16 24 24 C 1.50800 * 109.65920 * 312.64027 * 23 18 17 25 25 C 1.38613 * 118.12954 * 195.62717 * 24 23 18 26 26 C 1.38054 * 120.48382 * 180.65495 * 25 24 23 27 27 C 1.38308 * 119.89263 * 0.24780 * 26 25 24 28 28 C 1.37814 * 119.94855 * 359.33746 * 27 26 25 29 29 C 1.38377 * 122.00611 * 15.98709 * 24 23 18 30 30 H 1.08996 * 109.46886 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46774 * 299.99814 * 1 2 3 32 32 H 1.08995 * 109.47474 * 59.99622 * 1 2 3 33 33 H 1.09001 * 109.47291 * 240.00230 * 2 1 3 34 34 H 1.08995 * 109.47474 * 120.00378 * 2 1 3 35 35 H 1.08999 * 109.47375 * 30.00351 * 4 3 2 36 36 H 1.09004 * 109.46665 * 150.00403 * 4 3 2 37 37 H 0.96996 * 120.00157 * 179.97438 * 8 7 5 38 38 H 1.08998 * 109.46844 * 66.13469 * 15 13 3 39 39 H 1.08993 * 109.47333 * 306.12878 * 15 13 3 40 40 H 1.08999 * 109.60821 * 300.77921 * 17 16 15 41 41 H 1.09002 * 109.60288 * 61.26897 * 17 16 15 42 42 H 0.96996 * 120.00478 * 0.02562 * 21 20 18 43 43 H 0.97006 * 119.99566 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.44157 * 192.58302 * 23 18 17 45 45 H 1.08998 * 109.44056 * 72.69536 * 23 18 17 46 46 H 1.08004 * 119.75836 * 0.64064 * 25 24 23 47 47 H 1.08004 * 120.05404 * 179.97438 * 26 25 24 48 48 H 1.07997 * 120.02568 * 179.59605 * 27 26 25 49 49 H 1.07997 * 119.79031 * 180.22653 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8352 -1.7038 6 1 4.3427 1.2304 -1.0962 7 6 4.1489 2.3897 -2.8780 8 7 3.3489 3.1257 -3.6182 9 14 5.9130 2.0957 -3.4176 10 1 6.1402 0.6389 -3.5949 11 1 6.1605 2.7959 -4.7037 12 1 6.8409 2.6192 -2.3831 13 6 2.2430 2.0165 1.1672 14 8 2.6468 3.1601 1.1672 15 6 1.9914 1.3062 2.4723 16 7 2.1681 2.2490 3.5849 17 6 1.1862 3.3329 3.5152 18 6 1.4344 4.2963 4.6825 19 1 1.4790 3.7384 5.6178 20 6 0.3245 5.3136 4.7485 21 7 0.3381 6.2647 5.7034 22 8 -0.5808 5.2764 3.9424 23 6 2.7702 5.0014 4.4362 24 6 3.8174 3.9854 4.0549 25 6 5.1489 4.3664 4.1123 26 6 6.1469 3.4794 3.7610 27 6 5.8185 2.2024 3.3435 28 6 4.4973 1.8138 3.2921 29 6 3.4838 2.7054 3.6488 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.5816 1.6878 -2.0284 36 1 2.0955 3.1411 -1.1384 37 1 3.6749 3.5162 -4.4441 38 1 2.6966 0.4819 2.5791 39 1 0.9733 0.9172 2.4839 40 1 1.2966 3.8663 2.5710 41 1 0.1801 2.9202 3.5893 42 1 1.0624 6.2946 6.3478 43 1 -0.3761 6.9197 5.7456 44 1 3.0803 5.5187 5.3441 45 1 2.6553 5.7244 3.6286 46 1 5.4076 5.3644 4.4340 47 1 7.1821 3.7837 3.8079 48 1 6.5971 1.5090 3.0619 49 1 4.2440 0.8149 2.9692 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264046020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:45 Heat of formation + Delta-G solvation = -34.592514 kcal Electronic energy + Delta-G solvation = -31936.705869 eV Core-core repulsion = 27863.670524 eV Total energy + Delta-G solvation = -4073.035345 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.06462 -39.48552 -38.60643 -36.36468 -35.20938 -34.44427 -33.50966 -32.75887 -30.30372 -30.12180 -29.71787 -28.35120 -26.43337 -24.64443 -23.98109 -23.03877 -22.71901 -21.35673 -20.94813 -19.35929 -18.42989 -17.68247 -17.17281 -16.69007 -16.65459 -16.30971 -15.90188 -15.43268 -15.21876 -14.66533 -14.54781 -14.22350 -14.09642 -13.92681 -13.67495 -13.47289 -13.37489 -13.11779 -12.93131 -12.64221 -12.40417 -12.23313 -11.98583 -11.74492 -11.54450 -11.39405 -11.18958 -11.09331 -10.94441 -10.89246 -10.74809 -10.60506 -10.48884 -10.12443 -10.01272 -9.91679 -9.84818 -9.60382 -8.95777 -8.45109 -8.41623 -7.65513 -7.35576 -6.02478 -4.07066 1.67621 1.71708 2.51480 3.26311 3.31757 3.34046 3.36780 3.41423 3.78163 3.93525 4.22584 4.44955 4.47333 4.69044 4.88442 4.96809 5.06440 5.10325 5.28279 5.29508 5.31232 5.33167 5.36666 5.49251 5.54723 5.62936 5.64910 5.73011 5.76761 5.82146 5.86979 6.02131 6.03983 6.16357 6.23030 6.27080 6.43626 6.48894 6.59623 6.66864 6.84441 6.95430 7.04845 7.12753 7.17179 7.45897 7.51781 7.54816 7.93369 8.11572 8.25153 8.40262 8.90134 9.06311 9.57738 11.05609 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.004066 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.690547 B = 6884.746780 C = 7870.129945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.593 5.593 4 C 0.248 3.752 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.476 3.524 14 O -0.526 6.526 15 C 0.028 3.972 16 N -0.475 5.475 17 C 0.063 3.937 18 C -0.107 4.107 19 H 0.107 0.893 20 C 0.528 3.472 21 N -0.856 5.856 22 O -0.536 6.536 23 C -0.061 4.061 24 C -0.116 4.116 25 C -0.092 4.092 26 C -0.153 4.153 27 C -0.090 4.090 28 C -0.155 4.155 29 C 0.156 3.844 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.401 0.599 43 H 0.400 0.600 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.118 0.882 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 -1.281 20.543 20.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.562 4.562 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.261 3.739 14 O -0.404 6.404 15 C -0.101 4.101 16 N -0.188 5.188 17 C -0.063 4.063 18 C -0.129 4.129 19 H 0.125 0.875 20 C 0.312 3.688 21 N -0.420 5.420 22 O -0.411 6.411 23 C -0.099 4.099 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.172 4.172 27 C -0.109 4.109 28 C -0.175 4.175 29 C 0.057 3.943 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.229 0.771 43 H 0.231 0.769 44 H 0.094 0.906 45 H 0.099 0.901 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.136 0.864 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.042 -1.017 20.139 20.392 hybrid contribution 1.217 0.406 -0.803 1.513 sum -1.825 -0.611 19.336 19.431 Atomic orbital electron populations 1.22227 0.96695 1.01492 1.02401 1.21430 0.93585 0.84224 1.02680 1.48297 1.63318 1.13156 1.07770 1.19246 0.96212 0.93569 0.78124 1.21360 0.96844 1.31876 1.06150 0.92615 1.24915 0.97715 0.94948 0.96414 1.69923 1.35684 1.33432 1.14358 0.86594 0.84995 0.78224 0.77830 1.20257 1.21198 1.20193 1.21100 0.79117 0.87712 0.85964 1.90688 1.45316 1.17763 1.86598 1.22553 1.04469 0.95967 0.87105 1.58596 1.02800 1.17795 1.39603 1.22109 0.94684 0.90840 0.98693 1.21365 0.93788 0.95873 1.01862 0.87483 1.20466 0.86631 0.81690 0.80038 1.43849 1.30025 1.33810 1.34329 1.90774 1.37224 1.73393 1.39745 1.20395 0.90987 0.96699 1.01780 1.19120 0.94326 0.92625 1.05846 1.20781 0.91731 0.98896 0.99631 1.20849 0.98789 0.94376 1.03168 1.20842 0.95731 0.96367 0.97951 1.21011 0.92610 0.99586 1.04315 1.18334 0.88444 0.92128 0.95353 0.92061 0.93062 0.91987 0.89845 0.91820 0.95143 0.94048 0.92714 0.87297 0.87747 0.89764 0.89545 0.77083 0.76892 0.90558 0.90147 0.86555 0.86606 0.86413 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.18 37.16 0.38 -1.89 16 2 C 0.11 1.65 5.85 -4.04 -0.02 1.62 16 3 N -0.59 -12.36 2.46 -175.06 -0.43 -12.79 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.48 9.69 6.66 -10.98 -0.07 9.61 16 14 O -0.53 -12.90 12.55 5.56 0.07 -12.83 16 15 C 0.03 0.43 3.86 -4.97 -0.02 0.41 16 16 N -0.48 -7.21 4.72 -172.66 -0.82 -8.02 16 17 C 0.06 0.98 3.87 -3.89 -0.02 0.96 16 18 C -0.11 -1.30 2.74 -91.55 -0.25 -1.55 16 19 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 20 C 0.53 6.48 7.39 -10.98 -0.08 6.40 16 21 N -0.86 -6.41 8.80 31.22 0.27 -6.14 16 22 O -0.54 -9.08 16.74 5.56 0.09 -8.98 16 23 C -0.06 -0.75 5.03 -27.81 -0.14 -0.89 16 24 C -0.12 -1.76 5.74 -104.38 -0.60 -2.36 16 25 C -0.09 -1.30 9.63 -39.51 -0.38 -1.68 16 26 C -0.15 -2.20 10.05 -39.62 -0.40 -2.60 16 27 C -0.09 -1.38 10.04 -39.71 -0.40 -1.78 16 28 C -0.15 -2.50 8.65 -39.22 -0.34 -2.84 16 29 C 0.16 2.53 4.04 -83.85 -0.34 2.20 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.65 7.12 -51.93 -0.37 0.28 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 34 H 0.06 0.81 6.61 -51.93 -0.34 0.46 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 36 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.11 1.46 5.44 -51.93 -0.28 1.18 16 39 H 0.10 1.33 6.86 -51.93 -0.36 0.98 16 40 H 0.08 1.66 5.80 -51.93 -0.30 1.36 16 41 H 0.09 1.29 7.89 -51.93 -0.41 0.88 16 42 H 0.40 1.78 8.72 -40.82 -0.36 1.43 16 43 H 0.40 2.58 8.93 -40.82 -0.36 2.22 16 44 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 46 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 47 H 0.12 1.39 8.06 -52.48 -0.42 0.96 16 48 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 49 H 0.12 1.77 5.81 -52.49 -0.30 1.47 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -36.90 390.74 -9.56 -46.46 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.23 Total: 6.93 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.13 Total: -1.41 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: -0.23 Total: -53.14 kcal Atomic # 8 Polarization: -21.97 SS G_CDS: 0.16 Total: -21.81 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.90 -9.56 -46.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264046020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.867 kcal (2) G-P(sol) polarization free energy of solvation -36.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds