Wall clock time and date at job start Wed Apr 1 2020 04:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.46930 * 2 1 4 4 C 1.46903 * 111.00101 * 199.60383 * 3 2 1 5 5 C 1.50696 * 109.47304 * 66.04081 * 4 3 2 6 6 H 1.08010 * 119.99826 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00401 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99473 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00236 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47168 * 119.99870 * 9 7 5 12 12 H 1.48500 * 109.46919 * 240.00260 * 9 7 5 13 13 C 1.46904 * 111.00396 * 75.64677 * 3 2 1 14 14 C 1.50704 * 109.46949 * 199.97772 * 13 3 2 15 15 O 1.21279 * 120.00182 * 5.09437 * 14 13 3 16 16 N 1.34773 * 119.99425 * 185.09375 * 14 13 3 17 17 C 1.39965 * 119.99792 * 184.81801 * 16 14 13 18 18 C 1.38991 * 119.99811 * 214.08594 * 17 16 14 19 19 C 1.38205 * 120.22206 * 179.97438 * 18 17 16 20 20 C 1.38025 * 120.22494 * 0.05088 * 19 18 17 21 21 C 1.39573 * 119.99261 * 359.96920 * 20 19 18 22 22 C 1.47862 * 120.11311 * 179.97438 * 21 20 19 23 23 O 1.21554 * 120.00393 * 179.97438 * 22 21 20 24 24 N 1.34776 * 120.00000 * 0.02562 * 22 21 20 25 25 C 1.46497 * 120.00317 * 179.97438 * 24 22 21 26 26 C 1.53005 * 117.49564 * 223.61949 * 25 24 22 27 27 C 1.53000 * 117.49988 * 154.99680 * 25 24 22 28 28 C 1.38595 * 119.99746 * 34.06220 * 17 16 14 29 29 H 1.08994 * 109.46751 * 64.47327 * 1 2 3 30 30 H 1.09004 * 109.46638 * 184.47456 * 1 2 3 31 31 H 1.08999 * 109.47445 * 304.46959 * 1 2 3 32 32 H 1.08998 * 109.47512 * 239.99680 * 2 1 3 33 33 H 1.09005 * 109.46861 * 119.99523 * 2 1 3 34 34 H 1.08994 * 109.47195 * 186.04581 * 4 3 2 35 35 H 1.09001 * 109.46901 * 306.04539 * 4 3 2 36 36 H 0.97003 * 119.99791 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46998 * 79.98043 * 13 3 2 38 38 H 1.08999 * 109.46946 * 319.97921 * 13 3 2 39 39 H 0.96997 * 120.00462 * 4.82020 * 16 14 13 40 40 H 1.07998 * 119.88977 * 359.97438 * 18 17 16 41 41 H 1.08003 * 119.89059 * 180.02562 * 19 18 17 42 42 H 1.07993 * 120.00603 * 179.69812 * 20 19 18 43 43 H 0.97002 * 119.99487 * 359.97438 * 24 22 21 44 44 H 1.09003 * 115.55131 * 9.32263 * 25 24 22 45 45 H 1.08999 * 117.50046 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.49464 * 145.02153 * 26 25 24 47 47 H 1.08999 * 117.49953 * 214.97650 * 27 25 24 48 48 H 1.08996 * 117.49810 * 359.97438 * 27 25 24 49 49 H 1.07998 * 120.10897 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4507 -0.4601 5 6 3.4832 1.0457 -1.9100 6 1 2.5823 0.7676 -2.4370 7 6 4.6971 1.0300 -2.5637 8 7 5.7939 1.3681 -1.9217 9 14 4.7837 0.5286 -4.3610 10 1 3.4207 0.1964 -4.8485 11 1 5.3366 1.6503 -5.1618 12 1 5.6624 -0.6603 -4.5014 13 6 1.8746 1.9947 1.3286 14 6 1.9090 3.4958 1.1989 15 8 1.9482 4.0088 0.1006 16 7 1.8962 4.2680 2.3034 17 6 1.8262 5.6607 2.1828 18 6 2.4830 6.4715 3.1009 19 6 2.4174 7.8472 2.9859 20 6 1.6985 8.4252 1.9591 21 6 1.0351 7.6196 1.0323 22 6 0.2637 8.2359 -0.0684 23 8 -0.3128 7.5325 -0.8747 24 7 0.2007 9.5777 -0.1782 25 6 -0.5631 10.1884 -1.2690 26 6 0.0761 11.3676 -2.0051 27 6 -1.0961 11.6059 -1.0510 28 6 1.1025 6.2310 1.1475 29 1 -0.3632 0.4428 -0.9273 30 1 -0.3633 -1.0246 0.0802 31 1 -0.3634 0.5816 0.8472 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7848 2.4693 -0.3491 35 1 4.0250 0.7737 0.1361 36 1 6.6479 1.3575 -2.3817 37 1 2.6925 1.6667 1.9702 38 1 0.9243 1.6895 1.7667 39 1 1.9355 3.8587 3.1819 40 1 3.0464 6.0251 3.9069 41 1 2.9302 8.4723 3.7021 42 1 1.6456 9.5006 1.8755 43 1 0.6612 10.1391 0.4651 44 1 -1.1781 9.5037 -1.8531 45 1 1.0647 11.6893 -1.6775 46 1 -0.1183 11.4589 -3.0737 47 1 -2.0615 11.8539 -1.4920 48 1 -0.8788 12.0839 -0.0958 49 1 0.5915 5.6026 0.4332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266916930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:55 Heat of formation + Delta-G solvation = -1.392665 kcal Electronic energy + Delta-G solvation = -29626.771061 eV Core-core repulsion = 25555.175369 eV Total energy + Delta-G solvation = -4071.595692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64106 -39.76147 -38.28220 -37.16619 -36.43568 -34.57478 -33.07848 -32.56326 -31.10565 -30.52045 -29.69266 -27.87773 -25.22769 -24.65131 -22.82501 -22.72574 -22.37148 -21.95133 -20.90751 -20.46832 -19.62409 -18.39343 -17.05417 -16.78856 -16.43599 -16.20699 -16.11537 -15.32513 -15.09661 -14.95182 -14.61580 -14.41644 -14.27504 -14.05491 -13.88537 -13.63878 -13.45210 -12.98038 -12.81459 -12.73161 -12.26008 -12.05943 -11.99299 -11.94039 -11.67254 -11.64652 -11.57967 -11.18886 -10.97514 -10.84736 -10.61130 -10.51909 -10.32517 -10.12375 -10.02056 -9.81036 -9.41176 -9.13519 -9.05355 -8.90596 -8.35675 -8.14754 -7.25993 -5.94505 -3.93713 0.73437 1.26317 2.65759 2.78817 3.05098 3.17006 3.37831 3.45229 3.50951 3.57961 3.86974 4.43090 4.47461 4.50491 4.63505 4.64362 4.69740 4.86588 4.92496 5.04759 5.12734 5.26814 5.37144 5.39154 5.41960 5.49930 5.53040 5.64403 5.68759 5.72579 5.75174 5.80981 5.97521 6.06618 6.13231 6.19639 6.24708 6.28457 6.30103 6.43009 6.71544 6.78226 6.94671 7.27875 7.29363 7.31994 7.53978 7.87032 8.08646 8.15128 8.21777 8.50497 8.62480 9.12607 9.69148 11.17049 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.002689 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.606915 B =10409.135986 C =11660.890874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 N -0.519 5.519 4 C 0.195 3.805 5 C -0.498 4.498 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.039 3.961 14 C 0.507 3.493 15 O -0.470 6.470 16 N -0.688 5.688 17 C 0.157 3.843 18 C -0.126 4.126 19 C -0.107 4.107 20 C -0.112 4.112 21 C -0.117 4.117 22 C 0.564 3.436 23 O -0.521 6.521 24 N -0.702 5.702 25 C 0.082 3.918 26 C -0.194 4.194 27 C -0.190 4.190 28 C -0.061 4.061 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.020 0.980 34 H 0.036 0.964 35 H -0.012 1.012 36 H 0.259 0.741 37 H 0.056 0.944 38 H 0.094 0.906 39 H 0.408 0.592 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.122 0.878 43 H 0.400 0.600 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.103 0.897 48 H 0.096 0.904 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.878 16.818 14.198 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.071 4.071 3 N -0.244 5.244 4 C 0.070 3.930 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.093 4.093 14 C 0.293 3.707 15 O -0.338 6.338 16 N -0.335 5.335 17 C 0.062 3.938 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.121 4.121 22 C 0.352 3.648 23 O -0.397 6.397 24 N -0.354 5.354 25 C -0.024 4.024 26 C -0.232 4.232 27 C -0.229 4.229 28 C -0.082 4.082 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.006 0.994 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.244 0.756 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.236 0.764 44 H 0.157 0.843 45 H 0.116 0.884 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.115 0.885 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.376 16.825 12.368 23.780 hybrid contribution 1.158 -0.416 0.460 1.314 sum -10.218 16.409 12.828 23.199 Atomic orbital electron populations 1.21813 0.96509 1.00007 1.01887 1.22012 0.94285 0.89509 1.01295 1.61833 1.26365 1.16777 1.19447 1.19792 0.80470 0.97094 0.95647 1.21142 0.93230 1.43938 0.95365 0.91764 1.24971 0.95664 0.95725 0.98341 1.69970 0.98379 1.49189 1.36532 0.86448 0.78044 0.77933 0.85056 1.19599 1.21038 1.21236 1.21884 1.02112 0.90466 0.94810 1.21185 0.75717 0.90057 0.83723 1.90809 1.43091 1.74374 1.25552 1.43785 1.75408 1.03783 1.10561 1.17665 0.96021 0.83605 0.96513 1.21118 0.99218 0.93770 1.00545 1.20807 0.99307 0.94178 0.98272 1.21126 0.98136 0.99014 0.94900 1.19651 1.01717 0.93931 0.96815 1.18285 0.80257 0.81621 0.84657 1.90824 1.44985 1.61562 1.42332 1.45257 1.53230 1.06571 1.30300 1.21607 0.98662 0.89584 0.92564 1.23439 0.97848 1.02953 0.99006 1.23382 0.99126 0.98887 1.01470 1.21334 0.95734 0.93670 0.97474 0.92087 0.93299 0.93813 0.89057 0.96226 0.94625 0.99417 0.93132 0.92637 0.88763 0.75637 0.85195 0.85138 0.85994 0.76424 0.84269 0.88435 0.87852 0.87828 0.88523 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 10.07 37.16 0.37 -1.89 16 2 C 0.06 1.09 5.51 -3.83 -0.02 1.07 16 3 N -0.52 -11.45 3.95 -237.51 -0.94 -12.39 16 4 C 0.19 5.26 4.36 -4.98 -0.02 5.24 16 5 C -0.50 -14.65 8.23 -34.44 -0.28 -14.94 16 6 H 0.06 1.89 7.31 -52.48 -0.38 1.50 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 9 Si 0.90 22.73 29.54 -169.99 -5.02 17.71 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.04 0.68 5.30 -4.97 -0.03 0.65 16 14 C 0.51 9.28 7.13 -10.98 -0.08 9.20 16 15 O -0.47 -11.15 13.22 5.56 0.07 -11.07 16 16 N -0.69 -9.29 5.34 -9.89 -0.05 -9.34 16 17 C 0.16 2.19 6.26 -83.73 -0.52 1.67 16 18 C -0.13 -1.33 9.96 -39.31 -0.39 -1.72 16 19 C -0.11 -0.98 10.02 -39.67 -0.40 -1.38 16 20 C -0.11 -1.11 9.54 -39.16 -0.37 -1.48 16 21 C -0.12 -1.62 5.87 -104.99 -0.62 -2.23 16 22 C 0.56 8.26 7.77 -12.32 -0.10 8.16 16 23 O -0.52 -9.95 15.91 5.32 0.08 -9.87 16 24 N -0.70 -7.29 5.52 -54.74 -0.30 -7.59 16 25 C 0.08 0.79 6.43 -67.93 -0.44 0.35 16 26 C -0.19 -1.46 10.46 -26.73 -0.28 -1.74 16 27 C -0.19 -1.25 10.46 -26.73 -0.28 -1.53 16 28 C -0.06 -0.99 8.20 -38.98 -0.32 -1.31 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.62 6.66 -51.93 -0.35 0.27 16 32 H 0.09 1.95 6.58 -51.93 -0.34 1.61 16 33 H 0.02 0.34 8.00 -51.93 -0.42 -0.07 16 34 H 0.04 1.07 6.90 -51.93 -0.36 0.71 16 35 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.06 0.88 7.99 -51.93 -0.42 0.46 16 38 H 0.09 1.30 6.44 -51.93 -0.33 0.97 16 39 H 0.41 3.76 8.82 -40.82 -0.36 3.40 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 41 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 42 H 0.12 0.78 6.40 -52.49 -0.34 0.44 16 43 H 0.40 2.87 6.86 -40.82 -0.28 2.59 16 44 H 0.14 1.59 7.40 -51.93 -0.38 1.20 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.15 2.98 6.04 -52.49 -0.32 2.67 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -38.49 405.91 -10.38 -48.87 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.21 Total: 5.03 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -3.87 Total: -0.39 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.56 Total: -56.39 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.16 Total: -20.94 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.49 -10.38 -48.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266916930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.477 kcal (2) G-P(sol) polarization free energy of solvation -38.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds