Wall clock time and date at job start Wed Apr 1 2020 04:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.46930 * 2 1 4 4 C 1.46903 * 111.00101 * 199.60383 * 3 2 1 5 5 C 1.50696 * 109.47304 * 66.04081 * 4 3 2 6 6 H 1.08010 * 119.99826 * 0.02562 * 5 4 3 7 7 C 1.37882 * 120.00401 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99473 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00236 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46945 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47168 * 119.99870 * 9 7 5 12 12 H 1.48500 * 109.46919 * 240.00260 * 9 7 5 13 13 C 1.46904 * 111.00396 * 75.64677 * 3 2 1 14 14 C 1.50704 * 109.46949 * 199.97772 * 13 3 2 15 15 O 1.21279 * 120.00182 * 5.09437 * 14 13 3 16 16 N 1.34773 * 119.99425 * 185.09375 * 14 13 3 17 17 C 1.39965 * 119.99792 * 184.81801 * 16 14 13 18 18 C 1.38991 * 119.99811 * 214.08594 * 17 16 14 19 19 C 1.38205 * 120.22206 * 179.97438 * 18 17 16 20 20 C 1.38025 * 120.22494 * 0.05088 * 19 18 17 21 21 C 1.39573 * 119.99261 * 359.96920 * 20 19 18 22 22 C 1.47862 * 120.11311 * 179.97438 * 21 20 19 23 23 O 1.21554 * 120.00393 * 179.97438 * 22 21 20 24 24 N 1.34776 * 120.00000 * 0.02562 * 22 21 20 25 25 C 1.46497 * 120.00317 * 179.97438 * 24 22 21 26 26 C 1.53005 * 117.49564 * 223.61949 * 25 24 22 27 27 C 1.53000 * 117.49988 * 154.99680 * 25 24 22 28 28 C 1.38595 * 119.99746 * 34.06220 * 17 16 14 29 29 H 1.08994 * 109.46751 * 64.47327 * 1 2 3 30 30 H 1.09004 * 109.46638 * 184.47456 * 1 2 3 31 31 H 1.08999 * 109.47445 * 304.46959 * 1 2 3 32 32 H 1.08998 * 109.47512 * 239.99680 * 2 1 3 33 33 H 1.09005 * 109.46861 * 119.99523 * 2 1 3 34 34 H 1.08994 * 109.47195 * 186.04581 * 4 3 2 35 35 H 1.09001 * 109.46901 * 306.04539 * 4 3 2 36 36 H 0.97003 * 119.99791 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.46998 * 79.98043 * 13 3 2 38 38 H 1.08999 * 109.46946 * 319.97921 * 13 3 2 39 39 H 0.96997 * 120.00462 * 4.82020 * 16 14 13 40 40 H 1.07998 * 119.88977 * 359.97438 * 18 17 16 41 41 H 1.08003 * 119.89059 * 180.02562 * 19 18 17 42 42 H 1.07993 * 120.00603 * 179.69812 * 20 19 18 43 43 H 0.97002 * 119.99487 * 359.97438 * 24 22 21 44 44 H 1.09003 * 115.55131 * 9.32263 * 25 24 22 45 45 H 1.08999 * 117.50046 * 359.97438 * 26 25 24 46 46 H 1.08999 * 117.49464 * 145.02153 * 26 25 24 47 47 H 1.08999 * 117.49953 * 214.97650 * 27 25 24 48 48 H 1.08996 * 117.49810 * 359.97438 * 27 25 24 49 49 H 1.07998 * 120.10897 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4132 1.4507 -0.4601 5 6 3.4832 1.0457 -1.9100 6 1 2.5823 0.7676 -2.4370 7 6 4.6971 1.0300 -2.5637 8 7 5.7939 1.3681 -1.9217 9 14 4.7837 0.5286 -4.3610 10 1 3.4207 0.1964 -4.8485 11 1 5.3366 1.6503 -5.1618 12 1 5.6624 -0.6603 -4.5014 13 6 1.8746 1.9947 1.3286 14 6 1.9090 3.4958 1.1989 15 8 1.9482 4.0088 0.1006 16 7 1.8962 4.2680 2.3034 17 6 1.8262 5.6607 2.1828 18 6 2.4830 6.4715 3.1009 19 6 2.4174 7.8472 2.9859 20 6 1.6985 8.4252 1.9591 21 6 1.0351 7.6196 1.0323 22 6 0.2637 8.2359 -0.0684 23 8 -0.3128 7.5325 -0.8747 24 7 0.2007 9.5777 -0.1782 25 6 -0.5631 10.1884 -1.2690 26 6 0.0761 11.3676 -2.0051 27 6 -1.0961 11.6059 -1.0510 28 6 1.1025 6.2310 1.1475 29 1 -0.3632 0.4428 -0.9273 30 1 -0.3633 -1.0246 0.0802 31 1 -0.3634 0.5816 0.8472 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7848 2.4693 -0.3491 35 1 4.0250 0.7737 0.1361 36 1 6.6479 1.3575 -2.3817 37 1 2.6925 1.6667 1.9702 38 1 0.9243 1.6895 1.7667 39 1 1.9355 3.8587 3.1819 40 1 3.0464 6.0251 3.9069 41 1 2.9302 8.4723 3.7021 42 1 1.6456 9.5006 1.8755 43 1 0.6612 10.1391 0.4651 44 1 -1.1781 9.5037 -1.8531 45 1 1.0647 11.6893 -1.6775 46 1 -0.1183 11.4589 -3.0737 47 1 -2.0615 11.8539 -1.4920 48 1 -0.8788 12.0839 -0.0958 49 1 0.5915 5.6026 0.4332 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266916930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:53 Heat of formation + Delta-G solvation = -30.959901 kcal Electronic energy + Delta-G solvation = -29628.053192 eV Core-core repulsion = 25555.175369 eV Total energy + Delta-G solvation = -4072.877824 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.76235 -40.95217 -39.40428 -38.13747 -37.95067 -35.83477 -34.78828 -34.05331 -32.04674 -31.87565 -31.06996 -29.55374 -26.99606 -25.61668 -24.32561 -23.90659 -23.29190 -22.78033 -22.14906 -21.63857 -21.10088 -19.42947 -18.64353 -18.28005 -17.73290 -17.32712 -17.04663 -16.93611 -16.43832 -16.07078 -15.98056 -15.84664 -15.47602 -15.26182 -15.14781 -15.04937 -14.64029 -14.26837 -14.14772 -13.90789 -13.83619 -13.69558 -13.14629 -12.87410 -12.84359 -12.68622 -12.62763 -12.60162 -12.56989 -12.39129 -12.37960 -11.94860 -11.65350 -11.54369 -11.50157 -11.29000 -11.13709 -10.79180 -10.62572 -10.09239 -9.76123 -9.20356 -8.99120 -8.22853 -6.30496 -0.23168 0.28650 1.34199 1.37294 1.50181 1.54864 1.79263 1.86176 2.05838 2.37893 2.80258 3.00072 3.09757 3.30308 3.55332 3.73523 3.79171 3.94472 4.02055 4.04115 4.11035 4.16312 4.19135 4.30893 4.35546 4.44722 4.50940 4.53745 4.73406 4.74342 4.76017 4.88235 4.96689 4.99845 5.05297 5.16975 5.18958 5.23963 5.26826 5.30654 5.33868 5.40578 5.45513 5.47620 5.62737 5.93668 6.04506 6.35431 6.38901 6.40808 6.65418 6.84094 7.09671 7.26112 7.37441 8.88909 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009420 B = 0.002689 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2971.606915 B =10409.135986 C =11660.890874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 N -0.542 5.542 4 C 0.217 3.783 5 C -0.517 4.517 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.039 3.961 14 C 0.503 3.497 15 O -0.538 6.538 16 N -0.666 5.666 17 C 0.129 3.871 18 C -0.112 4.112 19 C -0.095 4.095 20 C -0.094 4.094 21 C -0.139 4.139 22 C 0.555 3.445 23 O -0.586 6.586 24 N -0.679 5.679 25 C 0.040 3.960 26 C -0.186 4.186 27 C -0.159 4.159 28 C -0.097 4.097 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.042 0.958 34 H -0.005 1.005 35 H -0.030 1.030 36 H 0.264 0.736 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.430 0.570 40 H 0.165 0.835 41 H 0.181 0.819 42 H 0.165 0.835 43 H 0.418 0.582 44 H 0.109 0.891 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.114 0.886 48 H 0.119 0.881 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.610 18.947 17.057 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.072 4.072 3 N -0.267 5.267 4 C 0.091 3.909 5 C -0.556 4.556 6 H 0.074 0.926 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.791 3.209 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.194 1.194 13 C -0.092 4.092 14 C 0.291 3.709 15 O -0.412 6.412 16 N -0.315 5.315 17 C 0.035 3.965 18 C -0.132 4.132 19 C -0.113 4.113 20 C -0.113 4.113 21 C -0.142 4.142 22 C 0.344 3.656 23 O -0.467 6.467 24 N -0.330 5.330 25 C -0.066 4.066 26 C -0.224 4.224 27 C -0.197 4.197 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.013 0.987 35 H -0.013 1.013 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.152 0.848 39 H 0.270 0.730 40 H 0.183 0.817 41 H 0.198 0.802 42 H 0.182 0.818 43 H 0.257 0.743 44 H 0.127 0.873 45 H 0.127 0.873 46 H 0.124 0.876 47 H 0.133 0.867 48 H 0.137 0.863 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.119 19.006 15.323 26.826 hybrid contribution 1.046 -0.936 -0.322 1.440 sum -10.073 18.070 15.001 25.554 Atomic orbital electron populations 1.21728 0.93579 1.02163 1.01629 1.22051 0.96546 0.87754 1.00820 1.61633 1.23068 1.18967 1.22985 1.19287 0.83162 0.93796 0.94624 1.21457 0.93172 1.44089 0.96861 0.92598 1.25893 0.95239 0.95573 1.03143 1.70083 0.98961 1.50000 1.38476 0.85378 0.78406 0.77977 0.79139 1.19071 1.20850 1.19421 1.22029 1.04840 0.89562 0.92746 1.21452 0.74768 0.90849 0.83841 1.90794 1.46610 1.75472 1.28311 1.43429 1.73871 1.03871 1.10324 1.17891 0.97485 0.83729 0.97431 1.21566 0.97567 0.94366 0.99695 1.21419 0.97851 0.93927 0.98122 1.21599 0.95761 1.00719 0.93184 1.19725 1.03131 0.93399 0.97970 1.18645 0.79817 0.82737 0.84393 1.90782 1.47927 1.63222 1.44779 1.45049 1.52321 1.05208 1.30431 1.21671 1.00610 0.90612 0.93692 1.23526 0.98939 1.00488 0.99496 1.23489 0.99236 0.94896 1.02056 1.21104 0.97874 0.94701 0.98179 0.94217 0.90198 0.91861 0.92155 0.94029 0.98700 1.01276 0.92769 0.90651 0.84755 0.73027 0.81720 0.80215 0.81766 0.74269 0.87345 0.87284 0.87606 0.86741 0.86282 0.88367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 10.07 71.98 0.72 -3.35 16 2 C 0.06 2.15 5.51 86.31 0.48 2.63 16 3 N -0.54 -24.90 3.95 -905.36 -3.58 -28.48 16 4 C 0.22 12.45 4.36 85.56 0.37 12.82 16 5 C -0.52 -31.99 8.23 25.60 0.21 -31.77 16 6 H 0.06 3.46 7.31 -2.91 -0.02 3.44 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.93 -59.63 13.29 21.45 0.28 -59.34 16 9 Si 0.97 47.99 29.54 68.60 2.03 50.02 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.04 1.37 5.30 85.56 0.45 1.82 16 14 C 0.50 19.48 7.13 87.66 0.63 20.11 16 15 O -0.54 -28.04 13.22 -3.02 -0.04 -28.08 16 16 N -0.67 -18.26 5.34 -303.60 -1.62 -19.88 16 17 C 0.13 3.64 6.26 38.11 0.24 3.88 16 18 C -0.11 -2.02 9.96 22.44 0.22 -1.80 16 19 C -0.10 -1.30 10.02 22.21 0.22 -1.08 16 20 C -0.09 -1.58 9.54 22.54 0.21 -1.36 16 21 C -0.14 -3.96 5.87 -20.10 -0.12 -4.08 16 22 C 0.56 17.54 7.77 86.79 0.67 18.22 16 23 O -0.59 -25.31 15.91 -3.88 -0.06 -25.37 16 24 N -0.68 -14.04 5.52 -445.38 -2.46 -16.50 16 25 C 0.04 0.79 6.43 44.99 0.29 1.08 16 26 C -0.19 -2.55 10.46 30.60 0.32 -2.23 16 27 C -0.16 -1.74 10.46 30.60 0.32 -1.42 16 28 C -0.10 -3.44 8.20 22.66 0.19 -3.25 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.06 1.67 6.66 -2.39 -0.02 1.66 16 32 H 0.06 2.68 6.58 -2.39 -0.02 2.66 16 33 H 0.04 1.41 8.00 -2.38 -0.02 1.39 16 34 H -0.01 -0.33 6.90 -2.39 -0.02 -0.35 16 35 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.08 2.34 7.99 -2.39 -0.02 2.32 16 38 H 0.13 3.51 6.44 -2.39 -0.02 3.49 16 39 H 0.43 7.34 8.82 -92.71 -0.82 6.52 16 40 H 0.17 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 42 H 0.16 1.28 6.40 -2.91 -0.02 1.26 16 43 H 0.42 5.02 6.86 -92.71 -0.64 4.39 16 44 H 0.11 2.81 7.40 -2.39 -0.02 2.79 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.10 4.50 6.04 -2.91 -0.02 4.49 16 Total: -1.00 -96.71 405.91 -0.01 -96.72 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: -0.46 Total: 20.30 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 5.90 Total: 10.61 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -7.37 Total: -124.20 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.10 Total: -53.45 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Total: -96.71 -0.01 -96.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266916930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.761 kcal (2) G-P(sol) polarization free energy of solvation -96.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds