Wall clock time and date at job start Wed Apr 1 2020 05:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46500 * 109.47191 * 2 1 4 4 C 1.34769 * 120.00199 * 270.00179 * 3 2 1 5 5 O 1.21592 * 120.00093 * 180.02562 * 4 3 2 6 6 N 1.34782 * 120.00305 * 0.02562 * 4 3 2 7 7 C 1.46494 * 120.00176 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.47001 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47015 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00187 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99708 * 179.97438 * 9 8 7 12 12 N 1.31512 * 120.00323 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99666 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47370 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47236 * 120.00347 * 13 11 9 16 16 H 1.48507 * 109.47109 * 239.99827 * 13 11 9 17 17 C 1.46498 * 119.99791 * 90.00486 * 3 2 1 18 18 H 1.08996 * 110.54243 * 1.15937 * 17 3 2 19 19 C 1.54635 * 110.48980 * 123.77196 * 17 3 2 20 20 C 1.54472 * 101.76682 * 143.47623 * 19 17 3 21 21 N 1.46763 * 105.47399 * 334.58176 * 20 19 17 22 22 C 1.39923 * 124.35212 * 197.03721 * 21 20 19 23 23 C 1.38878 * 120.07047 * 173.91647 * 22 21 20 24 24 C 1.38116 * 119.92597 * 179.74743 * 23 22 21 25 25 C 1.38278 * 120.07018 * 0.53011 * 24 23 22 26 26 C 1.38282 * 120.14605 * 359.74550 * 25 24 23 27 27 C 1.38116 * 120.06501 * 359.97438 * 26 25 24 28 28 C 1.34425 * 111.29979 * 17.02247 * 21 20 19 29 29 O 1.21281 * 124.94170 * 179.62723 * 28 21 20 30 30 H 1.09000 * 109.47034 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47203 * 299.99562 * 1 2 3 32 32 H 1.08992 * 109.47781 * 59.99734 * 1 2 3 33 33 H 1.09008 * 109.47203 * 240.00438 * 2 1 3 34 34 H 1.08997 * 109.47996 * 120.00677 * 2 1 3 35 35 H 0.96999 * 119.99484 * 359.97438 * 6 4 3 36 36 H 1.08995 * 109.47395 * 299.99882 * 7 6 4 37 37 H 1.09007 * 109.47022 * 60.00013 * 7 6 4 38 38 H 1.08995 * 109.47036 * 300.00207 * 8 7 6 39 39 H 1.08997 * 109.46993 * 60.00299 * 8 7 6 40 40 H 0.97000 * 119.99652 * 180.02562 * 12 11 9 41 41 H 1.08996 * 110.96978 * 261.59828 * 19 17 3 42 42 H 1.09000 * 110.96450 * 25.35260 * 19 17 3 43 43 H 1.08998 * 110.24450 * 215.58582 * 20 19 17 44 44 H 1.08999 * 110.24896 * 93.58275 * 20 19 17 45 45 H 1.07998 * 120.03379 * 0.02800 * 23 22 21 46 46 H 1.07998 * 119.96500 * 180.27539 * 24 23 22 47 47 H 1.08005 * 119.92932 * 179.77114 * 25 24 23 48 48 H 1.08000 * 119.96806 * 180.02562 * 26 25 24 49 49 H 1.08004 * 120.03369 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 -1.1671 5 8 2.6486 3.1628 -1.1671 6 7 2.0177 1.3815 -2.3344 7 6 2.2613 2.0723 -3.6031 8 6 1.9300 1.1349 -4.7660 9 6 2.1800 1.8458 -6.0711 10 1 2.5397 2.8642 -6.0711 11 6 1.9506 1.1958 -7.2652 12 7 1.5131 -0.0445 -7.2652 13 14 2.2612 2.0767 -8.8829 14 1 2.7463 3.4537 -8.6115 15 1 3.2852 1.3351 -9.6618 16 1 0.9983 2.1418 -9.6615 17 6 2.2625 2.0717 1.2687 18 1 2.0512 1.4119 2.1102 19 6 3.7204 2.5830 1.3348 20 6 3.5498 3.9261 2.0784 21 7 2.1713 4.3510 1.8082 22 6 1.6954 5.6534 1.9952 23 6 0.4092 5.9889 1.5928 24 6 -0.0593 7.2741 1.7836 25 6 0.7547 8.2291 2.3645 26 6 2.0378 7.8999 2.7611 27 6 2.5102 6.6149 2.5784 28 6 1.4245 3.3280 1.3577 29 8 0.2500 3.4018 1.0644 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6944 0.4670 -2.3344 36 1 1.6312 2.9598 -3.6604 37 1 3.3094 2.3665 -3.6612 38 1 2.5605 0.2477 -4.7085 39 1 0.8822 0.8404 -4.7081 40 1 1.3521 -0.5018 -8.1053 41 1 4.3483 1.8984 1.9050 42 1 4.1246 2.7393 0.3347 43 1 4.2541 4.6631 1.6924 44 1 3.6983 3.7861 3.1491 45 1 -0.2255 5.2444 1.1354 46 1 -1.0609 7.5344 1.4750 47 1 0.3873 9.2344 2.5092 48 1 2.6709 8.6480 3.2149 49 1 3.5124 6.3582 2.8887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273165078.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:02 Heat of formation + Delta-G solvation = -44.826479 kcal Electronic energy + Delta-G solvation = -30779.702631 eV Core-core repulsion = 26706.223507 eV Total energy + Delta-G solvation = -4073.479123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.50814 -40.99456 -39.45670 -37.74616 -37.03606 -36.62020 -34.91315 -33.67027 -31.90041 -31.57370 -31.14733 -29.66211 -28.23286 -26.58603 -24.42063 -24.28915 -24.09573 -23.02597 -22.32158 -21.34094 -20.66849 -19.04750 -18.62093 -18.46660 -17.88516 -17.50298 -17.19403 -16.73982 -16.51007 -16.21305 -15.83198 -15.37721 -15.17328 -15.14966 -15.03986 -14.86171 -14.79179 -14.45318 -14.31508 -14.29467 -13.87991 -13.72249 -13.50758 -13.24571 -13.16258 -12.94996 -12.71033 -12.56170 -12.51140 -12.41091 -12.25757 -12.14282 -11.98492 -11.67800 -11.47206 -11.24078 -11.03251 -10.90535 -10.62940 -10.16085 -9.93425 -9.56338 -8.91641 -8.26355 -6.36778 0.24952 0.41658 1.21955 1.39120 1.40152 1.53466 1.77987 1.84585 2.09225 2.38739 2.88584 2.96365 3.08265 3.18374 3.47970 3.83196 3.89751 3.97094 4.03597 4.05612 4.25627 4.28448 4.32252 4.41536 4.46194 4.47287 4.50226 4.53497 4.56394 4.68890 4.78018 4.80560 4.89256 4.93235 5.06819 5.10361 5.21921 5.25700 5.33200 5.43697 5.47752 5.51479 5.54899 5.58709 5.59873 5.73812 5.82301 6.04982 6.11679 6.14178 6.75703 6.91461 6.95902 7.32483 7.50365 8.85878 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011643 B = 0.002702 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2404.201909 B =10362.082414 C =11672.137215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.102 3.898 3 N -0.610 5.610 4 C 0.699 3.301 5 O -0.623 6.623 6 N -0.732 5.732 7 C 0.163 3.837 8 C 0.027 3.973 9 C -0.546 4.546 10 H 0.056 0.944 11 C 0.008 3.992 12 N -0.925 5.925 13 Si 0.965 3.035 14 H -0.267 1.267 15 H -0.273 1.273 16 H -0.277 1.277 17 C 0.137 3.863 18 H 0.171 0.829 19 C -0.135 4.135 20 C 0.099 3.901 21 N -0.556 5.556 22 C 0.148 3.852 23 C -0.193 4.193 24 C -0.104 4.104 25 C -0.150 4.150 26 C -0.090 4.090 27 C -0.159 4.159 28 C 0.500 3.500 29 O -0.548 6.548 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.025 0.975 33 H 0.083 0.917 34 H 0.129 0.871 35 H 0.404 0.596 36 H 0.031 0.969 37 H 0.048 0.952 38 H 0.013 0.987 39 H 0.003 0.997 40 H 0.266 0.734 41 H 0.143 0.857 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.132 0.868 47 H 0.149 0.851 48 H 0.161 0.839 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 4.991 27.940 28.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.347 5.347 4 C 0.400 3.600 5 O -0.504 6.504 6 N -0.388 5.388 7 C 0.039 3.961 8 C -0.011 4.011 9 C -0.585 4.585 10 H 0.075 0.925 11 C -0.191 4.191 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.191 1.191 15 H -0.198 1.198 16 H -0.203 1.203 17 C 0.030 3.970 18 H 0.188 0.812 19 C -0.173 4.173 20 C -0.022 4.022 21 N -0.279 5.279 22 C 0.054 3.946 23 C -0.213 4.213 24 C -0.123 4.123 25 C -0.169 4.169 26 C -0.109 4.109 27 C -0.179 4.179 28 C 0.288 3.712 29 O -0.426 6.426 30 H 0.111 0.889 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.101 0.899 34 H 0.147 0.853 35 H 0.241 0.759 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.022 0.978 40 H 0.075 0.925 41 H 0.161 0.839 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.140 0.860 45 H 0.135 0.865 46 H 0.150 0.850 47 H 0.167 0.833 48 H 0.178 0.822 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.639 5.658 27.644 28.596 hybrid contribution -0.725 -0.076 -1.578 1.738 sum 3.915 5.581 26.066 26.943 Atomic orbital electron populations 1.22193 0.96264 1.03048 1.01225 1.21910 0.94200 0.80119 1.05686 1.47009 1.69826 1.15246 1.02601 1.16132 0.78505 0.84100 0.81231 1.90866 1.54584 1.18117 1.86848 1.45384 1.70981 1.17959 1.04496 1.21029 0.98911 0.94859 0.81290 1.19099 0.95867 0.94498 0.91604 1.21456 1.45215 0.99906 0.91899 0.92541 1.25863 0.94493 0.95666 1.03052 1.70060 1.46115 1.12305 1.27979 0.85391 0.78083 0.78822 0.78718 1.19128 1.19825 1.20279 1.21804 0.95383 0.91881 0.87974 0.81178 1.23119 0.94733 0.96452 1.02990 1.22532 0.80062 0.97012 1.02614 1.45842 1.13726 1.06874 1.61432 1.18119 0.93936 0.84280 0.98259 1.21583 0.96486 0.98975 1.04256 1.21258 1.00669 0.92170 0.98170 1.21465 0.94783 1.00230 1.00441 1.21387 0.95877 0.95747 0.97839 1.21103 1.00625 0.93133 1.03045 1.21972 0.86757 0.87686 0.74749 1.90572 1.17559 1.85175 1.49276 0.88879 0.92757 0.95606 0.89895 0.85312 0.75902 0.95068 0.93397 0.96897 0.97845 0.92468 0.83931 0.91056 0.89269 0.86046 0.86500 0.85036 0.83294 0.82164 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 10.24 71.98 0.74 -2.83 16 2 C 0.10 1.85 5.88 86.38 0.51 2.36 16 3 N -0.61 -15.77 2.50 -815.77 -2.04 -17.81 16 4 C 0.70 25.57 7.53 179.05 1.35 26.92 16 5 O -0.62 -27.22 13.58 -4.00 -0.05 -27.27 16 6 N -0.73 -27.88 5.42 -478.53 -2.59 -30.47 16 7 C 0.16 7.55 5.61 86.38 0.48 8.04 16 8 C 0.03 1.41 5.09 29.85 0.15 1.56 16 9 C -0.55 -31.46 9.11 25.60 0.23 -31.23 16 10 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 11 C 0.01 0.46 5.46 84.65 0.46 0.93 16 12 N -0.93 -54.91 13.29 21.45 0.28 -54.63 16 13 Si 0.97 44.51 29.54 68.60 2.03 46.54 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 C 0.14 2.88 3.42 44.99 0.15 3.03 16 18 H 0.17 1.95 7.85 -2.39 -0.02 1.94 16 19 C -0.13 -2.21 6.40 31.65 0.20 -2.01 16 20 C 0.10 1.55 6.27 86.83 0.54 2.09 16 21 N -0.56 -14.56 3.14 -627.71 -1.97 -16.53 16 22 C 0.15 4.13 6.60 38.15 0.25 4.38 16 23 C -0.19 -6.14 9.28 22.39 0.21 -5.93 16 24 C -0.10 -2.63 10.04 22.25 0.22 -2.41 16 25 C -0.15 -2.89 10.04 22.29 0.22 -2.67 16 26 C -0.09 -1.54 10.04 22.25 0.22 -1.32 16 27 C -0.16 -3.18 9.41 22.39 0.21 -2.97 16 28 C 0.50 15.25 6.13 87.90 0.54 15.79 16 29 O -0.55 -21.49 14.82 -3.03 -0.04 -21.53 16 30 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.51 6.36 -2.38 -0.02 1.49 16 34 H 0.13 1.17 7.94 -2.39 -0.02 1.16 16 35 H 0.40 13.46 6.20 -92.71 -0.58 12.88 16 36 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 41 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.79 6.04 -2.39 -0.01 1.77 16 43 H 0.09 1.37 7.70 -2.39 -0.02 1.35 16 44 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.12 4.53 5.27 -2.91 -0.02 4.52 16 46 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 47 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 49 H 0.15 2.06 7.02 -2.91 -0.02 2.04 16 Total: -1.00 -84.70 398.03 2.70 -82.01 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.39 Total: 25.95 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.70 Total: 13.74 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -6.32 Total: -119.44 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.10 Total: -48.80 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -84.70 2.70 -82.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273165078.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.181 kcal (2) G-P(sol) polarization free energy of solvation -84.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds