Wall clock time and date at job start Wed Apr 1 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46940 * 2 1 4 4 C 1.34782 * 119.99894 * 269.99614 * 3 2 1 5 5 O 1.21581 * 120.00170 * 185.30511 * 4 3 2 6 6 N 1.34781 * 119.99820 * 5.29917 * 4 3 2 7 7 C 1.46496 * 120.00264 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47519 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.47127 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00409 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00020 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99693 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00371 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46799 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47132 * 119.99872 * 13 11 9 16 16 H 1.48502 * 109.47568 * 240.00019 * 13 11 9 17 17 C 1.46497 * 120.00346 * 89.99573 * 3 2 1 18 18 H 1.09003 * 110.43206 * 187.78544 * 17 3 2 19 19 C 1.54633 * 110.48377 * 65.25002 * 17 3 2 20 20 C 1.54481 * 101.76041 * 266.11594 * 19 17 3 21 21 N 1.46766 * 105.47902 * 334.58767 * 20 19 17 22 22 C 1.39921 * 124.35270 * 197.01643 * 21 20 19 23 23 C 1.38869 * 120.07155 * 354.26546 * 22 21 20 24 24 C 1.38110 * 119.93153 * 179.97438 * 23 22 21 25 25 C 1.38284 * 120.06840 * 359.97438 * 24 23 22 26 26 C 1.38283 * 120.14269 * 0.02562 * 25 24 23 27 27 C 1.38108 * 120.06797 * 0.02562 * 26 25 24 28 28 C 1.34422 * 111.29462 * 17.27699 * 21 20 19 29 29 O 1.21288 * 124.93760 * 179.31022 * 28 21 20 30 30 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47834 * 300.00753 * 1 2 3 32 32 H 1.09005 * 109.47017 * 60.00619 * 1 2 3 33 33 H 1.08999 * 109.47463 * 239.99891 * 2 1 3 34 34 H 1.09005 * 109.47017 * 119.99381 * 2 1 3 35 35 H 0.97008 * 119.99863 * 0.02562 * 6 4 3 36 36 H 1.08998 * 109.47088 * 300.00634 * 7 6 4 37 37 H 1.09007 * 109.46588 * 60.00149 * 7 6 4 38 38 H 1.08998 * 109.47240 * 300.00275 * 8 7 6 39 39 H 1.09000 * 109.46668 * 60.00245 * 8 7 6 40 40 H 0.97003 * 119.99447 * 180.02562 * 12 11 9 41 41 H 1.09000 * 110.96849 * 148.00733 * 19 17 3 42 42 H 1.08994 * 111.00210 * 24.24793 * 19 17 3 43 43 H 1.08998 * 110.24688 * 215.58151 * 20 19 17 44 44 H 1.08999 * 110.31779 * 93.62474 * 20 19 17 45 45 H 1.07999 * 120.03201 * 359.94990 * 23 22 21 46 46 H 1.08001 * 119.96535 * 179.72495 * 24 23 22 47 47 H 1.08004 * 119.92629 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.96234 * 180.02562 * 26 25 24 49 49 H 1.08007 * 120.03444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1673 5 8 2.7387 3.1267 -1.1696 6 7 1.9182 1.4211 -2.3320 7 6 2.1618 2.1118 -3.6007 8 6 1.7062 1.2240 -4.7605 9 6 1.9575 1.9343 -6.0656 10 1 2.3977 2.9205 -6.0677 11 6 1.6244 1.3257 -7.2570 12 7 1.0879 0.1249 -7.2545 13 14 1.9352 2.2063 -8.8748 14 1 2.5420 3.5349 -8.6065 15 1 2.8608 1.3980 -9.7086 16 1 0.6493 2.3865 -9.5954 17 6 2.2623 2.0720 1.2687 18 1 2.4874 3.1238 1.0921 19 6 3.4177 1.3935 2.0406 20 6 2.6514 0.4154 2.9586 21 7 1.3158 1.0004 3.1261 22 6 0.4156 0.6373 4.1339 23 6 0.7140 -0.4172 4.9867 24 6 -0.1764 -0.7728 5.9807 25 6 -1.3639 -0.0795 6.1276 26 6 -1.6640 0.9711 5.2801 27 6 -0.7782 1.3308 4.2834 28 6 1.0665 1.9258 2.1836 29 8 0.0339 2.5541 2.0830 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5224 0.5355 -2.3301 36 1 1.6028 3.0473 -3.6183 37 1 3.2266 2.3229 -3.7008 38 1 2.2650 0.2883 -4.7431 39 1 0.6415 1.0134 -4.6602 40 1 0.8539 -0.3035 -8.0928 41 1 3.9760 2.1229 2.6275 42 1 4.0780 0.8546 1.3612 43 1 3.1513 0.3338 3.9237 44 1 2.5773 -0.5653 2.4887 45 1 1.6413 -0.9590 4.8724 46 1 0.0531 -1.5957 6.6415 47 1 -2.0587 -0.3598 6.9055 48 1 -2.5921 1.5107 5.3977 49 1 -1.0130 2.1518 3.6220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273165081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:10 Heat of formation + Delta-G solvation = -21.704994 kcal Electronic energy + Delta-G solvation = -30538.321506 eV Core-core repulsion = 26465.845005 eV Total energy + Delta-G solvation = -4072.476501 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.82014 -39.87208 -38.75753 -37.08705 -35.70789 -34.97982 -33.23014 -32.52800 -31.24620 -30.59335 -29.63424 -28.99639 -27.40523 -24.75055 -23.66446 -23.63163 -23.02707 -21.73685 -20.99643 -20.32877 -19.43121 -18.29136 -18.05497 -17.37105 -16.71167 -16.35461 -15.87444 -15.42917 -15.35179 -14.98661 -14.53274 -14.51085 -14.24901 -14.07514 -14.03280 -13.93225 -13.70718 -13.56548 -13.42417 -13.12089 -13.03229 -12.66396 -12.29956 -12.23288 -12.02857 -11.93482 -11.64101 -11.45440 -11.24747 -11.08916 -11.05207 -10.61882 -10.59157 -10.35253 -10.11836 -9.95006 -9.56970 -9.26722 -9.25414 -8.84994 -8.49106 -8.27762 -8.26684 -6.09455 -4.11894 0.92022 1.08946 1.99962 2.34710 2.92804 3.28707 3.36394 3.38169 3.41780 3.55218 3.83132 4.02600 4.21363 4.38739 4.44543 4.50245 4.57928 4.61941 4.65420 4.84611 4.92499 5.07208 5.10306 5.20059 5.20852 5.24224 5.27879 5.28570 5.45731 5.48735 5.63506 5.68297 5.70870 5.86620 6.06210 6.12704 6.17574 6.22921 6.27854 6.38296 6.39902 6.67592 6.75631 6.76819 6.93995 6.99919 7.54322 7.62204 7.68613 7.89639 8.19319 8.31508 8.84800 8.94889 9.52928 11.02232 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002114 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.198592 B =13239.269736 C =13617.159100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 N -0.618 5.618 4 C 0.706 3.294 5 O -0.589 6.589 6 N -0.732 5.732 7 C 0.138 3.862 8 C 0.013 3.987 9 C -0.519 4.519 10 H 0.060 0.940 11 C 0.058 3.942 12 N -0.894 5.894 13 Si 0.897 3.103 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.135 3.865 18 H 0.139 0.861 19 C -0.145 4.145 20 C 0.092 3.908 21 N -0.558 5.558 22 C 0.169 3.831 23 C -0.159 4.159 24 C -0.093 4.093 25 C -0.148 4.148 26 C -0.091 4.091 27 C -0.157 4.157 28 C 0.515 3.485 29 O -0.491 6.491 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.394 0.606 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.261 0.739 41 H 0.098 0.902 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.125 0.875 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.900 -5.743 28.974 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.025 4.025 3 N -0.357 5.357 4 C 0.408 3.592 5 O -0.467 6.467 6 N -0.387 5.387 7 C 0.015 3.985 8 C -0.024 4.024 9 C -0.558 4.558 10 H 0.079 0.921 11 C -0.144 4.144 12 N -0.533 5.533 13 Si 0.725 3.275 14 H -0.196 1.196 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.026 3.974 18 H 0.157 0.843 19 C -0.184 4.184 20 C -0.030 4.030 21 N -0.282 5.282 22 C 0.076 3.924 23 C -0.180 4.180 24 C -0.112 4.112 25 C -0.167 4.167 26 C -0.109 4.109 27 C -0.177 4.177 28 C 0.302 3.698 29 O -0.363 6.363 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.229 0.771 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.123 0.877 43 H 0.108 0.892 44 H 0.102 0.898 45 H 0.143 0.857 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.143 0.857 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.657 -4.678 28.693 29.079 hybrid contribution -0.144 -0.305 -0.841 0.906 sum 0.513 -4.983 27.851 28.298 Atomic orbital electron populations 1.22324 0.95542 1.02516 1.03452 1.21691 0.94948 0.82419 1.03479 1.46931 1.71444 1.13862 1.03456 1.15921 0.79068 0.83984 0.80239 1.90887 1.50487 1.19406 1.85945 1.45681 1.66176 1.21474 1.05331 1.21653 1.00285 0.96263 0.80269 1.19325 0.97029 0.94967 0.91112 1.21080 1.41399 1.02907 0.90416 0.92128 1.25001 0.94985 0.94952 0.99424 1.69969 1.42513 1.13985 1.26850 0.86453 0.77927 0.79855 0.83312 1.19554 1.20963 1.20956 1.21412 0.91773 1.01291 0.82947 0.84326 1.23096 0.97402 0.99329 0.98564 1.22409 0.81275 0.97724 1.01569 1.45836 1.16277 1.38532 1.27591 1.17802 0.90131 0.95314 0.89202 1.20759 1.01401 0.98159 0.97665 1.20924 0.93793 0.99250 0.97226 1.21136 0.97684 0.97330 1.00586 1.21082 0.98960 0.96640 0.94241 1.21666 0.93275 1.02165 1.00626 1.21319 0.89146 0.78393 0.80981 1.90649 1.28055 1.46191 1.71413 0.91313 0.92201 0.91527 0.89683 0.90244 0.77106 0.92609 0.92591 0.96000 0.95977 0.92926 0.88354 0.87668 0.89182 0.89826 0.85742 0.85719 0.86064 0.85670 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.99 37.16 0.37 -1.71 16 2 C 0.10 1.02 5.21 -4.04 -0.02 1.00 16 3 N -0.62 -8.14 2.44 -171.81 -0.42 -8.56 16 4 C 0.71 12.42 8.27 -86.91 -0.72 11.70 16 5 O -0.59 -12.43 15.75 5.29 0.08 -12.34 16 6 N -0.73 -13.10 5.40 -65.23 -0.35 -13.45 16 7 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 8 C 0.01 0.33 5.09 -27.88 -0.14 0.18 16 9 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 16 10 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 13 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 17 C 0.13 1.57 3.40 -67.94 -0.23 1.34 16 18 H 0.14 1.88 7.05 -51.93 -0.37 1.51 16 19 C -0.14 -1.02 6.59 -25.10 -0.17 -1.19 16 20 C 0.09 0.55 5.42 -3.12 -0.02 0.54 16 21 N -0.56 -5.29 3.14 -112.27 -0.35 -5.64 16 22 C 0.17 1.68 6.60 -83.70 -0.55 1.13 16 23 C -0.16 -1.23 9.40 -39.39 -0.37 -1.60 16 24 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 25 C -0.15 -1.13 10.04 -39.55 -0.40 -1.52 16 26 C -0.09 -0.82 10.04 -39.61 -0.40 -1.21 16 27 C -0.16 -1.74 9.28 -39.39 -0.37 -2.11 16 28 C 0.51 6.36 5.15 -10.86 -0.06 6.31 16 29 O -0.49 -7.77 14.17 5.55 0.08 -7.69 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.79 5.71 -51.93 -0.30 0.49 16 32 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.08 0.85 6.60 -51.93 -0.34 0.50 16 34 H 0.08 0.63 4.96 -51.93 -0.26 0.37 16 35 H 0.39 6.23 6.20 -40.82 -0.25 5.98 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 43 H 0.09 0.36 7.70 -51.93 -0.40 -0.04 16 44 H 0.08 0.41 6.32 -51.93 -0.33 0.08 16 45 H 0.12 0.68 7.01 -52.49 -0.37 0.31 16 46 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 48 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.15 2.01 5.27 -52.48 -0.28 1.74 16 LS Contribution 391.77 15.07 5.90 5.90 Total: -1.00 -34.44 391.77 -10.31 -44.74 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.07 Total: 4.42 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -3.89 Total: 1.54 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.39 Total: -52.97 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.03 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.44 -10.31 -44.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273165081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.039 kcal (2) G-P(sol) polarization free energy of solvation -34.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds