Wall clock time and date at job start Wed Apr 1 2020 05:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.46940 * 2 1 4 4 C 1.34782 * 119.99894 * 269.99614 * 3 2 1 5 5 O 1.21581 * 120.00170 * 185.30511 * 4 3 2 6 6 N 1.34781 * 119.99820 * 5.29917 * 4 3 2 7 7 C 1.46496 * 120.00264 * 179.97438 * 6 4 3 8 8 C 1.52999 * 109.47519 * 180.02562 * 7 6 4 9 9 C 1.50699 * 109.47127 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00409 * 359.97438 * 9 8 7 11 11 C 1.37874 * 120.00020 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99693 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00371 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.46799 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47132 * 119.99872 * 13 11 9 16 16 H 1.48502 * 109.47568 * 240.00019 * 13 11 9 17 17 C 1.46497 * 120.00346 * 89.99573 * 3 2 1 18 18 H 1.09003 * 110.43206 * 187.78544 * 17 3 2 19 19 C 1.54633 * 110.48377 * 65.25002 * 17 3 2 20 20 C 1.54481 * 101.76041 * 266.11594 * 19 17 3 21 21 N 1.46766 * 105.47902 * 334.58767 * 20 19 17 22 22 C 1.39921 * 124.35270 * 197.01643 * 21 20 19 23 23 C 1.38869 * 120.07155 * 354.26546 * 22 21 20 24 24 C 1.38110 * 119.93153 * 179.97438 * 23 22 21 25 25 C 1.38284 * 120.06840 * 359.97438 * 24 23 22 26 26 C 1.38283 * 120.14269 * 0.02562 * 25 24 23 27 27 C 1.38108 * 120.06797 * 0.02562 * 26 25 24 28 28 C 1.34422 * 111.29462 * 17.27699 * 21 20 19 29 29 O 1.21288 * 124.93760 * 179.31022 * 28 21 20 30 30 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47834 * 300.00753 * 1 2 3 32 32 H 1.09005 * 109.47017 * 60.00619 * 1 2 3 33 33 H 1.08999 * 109.47463 * 239.99891 * 2 1 3 34 34 H 1.09005 * 109.47017 * 119.99381 * 2 1 3 35 35 H 0.97008 * 119.99863 * 0.02562 * 6 4 3 36 36 H 1.08998 * 109.47088 * 300.00634 * 7 6 4 37 37 H 1.09007 * 109.46588 * 60.00149 * 7 6 4 38 38 H 1.08998 * 109.47240 * 300.00275 * 8 7 6 39 39 H 1.09000 * 109.46668 * 60.00245 * 8 7 6 40 40 H 0.97003 * 119.99447 * 180.02562 * 12 11 9 41 41 H 1.09000 * 110.96849 * 148.00733 * 19 17 3 42 42 H 1.08994 * 111.00210 * 24.24793 * 19 17 3 43 43 H 1.08998 * 110.24688 * 215.58151 * 20 19 17 44 44 H 1.08999 * 110.31779 * 93.62474 * 20 19 17 45 45 H 1.07999 * 120.03201 * 359.94990 * 23 22 21 46 46 H 1.08001 * 119.96535 * 179.72495 * 24 23 22 47 47 H 1.08004 * 119.92629 * 179.97438 * 25 24 23 48 48 H 1.07999 * 119.96234 * 180.02562 * 26 25 24 49 49 H 1.08007 * 120.03444 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0166 -1.1673 5 8 2.7387 3.1267 -1.1696 6 7 1.9182 1.4211 -2.3320 7 6 2.1618 2.1118 -3.6007 8 6 1.7062 1.2240 -4.7605 9 6 1.9575 1.9343 -6.0656 10 1 2.3977 2.9205 -6.0677 11 6 1.6244 1.3257 -7.2570 12 7 1.0879 0.1249 -7.2545 13 14 1.9352 2.2063 -8.8748 14 1 2.5420 3.5349 -8.6065 15 1 2.8608 1.3980 -9.7086 16 1 0.6493 2.3865 -9.5954 17 6 2.2623 2.0720 1.2687 18 1 2.4874 3.1238 1.0921 19 6 3.4177 1.3935 2.0406 20 6 2.6514 0.4154 2.9586 21 7 1.3158 1.0004 3.1261 22 6 0.4156 0.6373 4.1339 23 6 0.7140 -0.4172 4.9867 24 6 -0.1764 -0.7728 5.9807 25 6 -1.3639 -0.0795 6.1276 26 6 -1.6640 0.9711 5.2801 27 6 -0.7782 1.3308 4.2834 28 6 1.0665 1.9258 2.1836 29 8 0.0339 2.5541 2.0830 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.5224 0.5355 -2.3301 36 1 1.6028 3.0473 -3.6183 37 1 3.2266 2.3229 -3.7008 38 1 2.2650 0.2883 -4.7431 39 1 0.6415 1.0134 -4.6602 40 1 0.8539 -0.3035 -8.0928 41 1 3.9760 2.1229 2.6275 42 1 4.0780 0.8546 1.3612 43 1 3.1513 0.3338 3.9237 44 1 2.5773 -0.5653 2.4887 45 1 1.6413 -0.9590 4.8724 46 1 0.0531 -1.5957 6.6415 47 1 -2.0587 -0.3598 6.9055 48 1 -2.5921 1.5107 5.3977 49 1 -1.0130 2.1518 3.6220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273165081.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:08 Heat of formation + Delta-G solvation = -43.139607 kcal Electronic energy + Delta-G solvation = -30539.250981 eV Core-core repulsion = 26465.845005 eV Total energy + Delta-G solvation = -4073.405975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.68873 -41.07039 -39.55498 -38.06046 -36.78901 -36.65309 -34.89409 -33.67128 -31.87712 -31.66971 -31.27933 -29.72875 -28.38038 -26.61029 -24.58579 -24.28344 -23.96986 -23.03483 -22.27891 -21.34196 -20.48281 -19.50434 -18.79754 -18.60016 -18.19762 -17.38830 -16.80518 -16.76580 -16.48673 -16.38925 -15.85911 -15.48839 -15.30037 -15.16026 -15.02659 -14.83572 -14.78058 -14.65721 -14.30735 -14.26797 -13.95450 -13.88335 -13.67178 -13.21867 -13.00896 -12.95479 -12.69955 -12.63911 -12.51132 -12.46181 -12.25501 -12.12279 -12.08192 -11.67862 -11.48931 -11.28773 -11.16021 -10.99513 -10.61271 -10.20869 -9.89963 -9.63754 -8.95627 -8.24335 -6.34299 0.20118 0.45090 1.04692 1.40864 1.42128 1.55195 1.59837 1.86309 2.02662 2.40354 2.86804 2.91062 3.07308 3.10538 3.34623 3.71242 3.79499 3.96196 3.98764 4.07605 4.13185 4.24733 4.32772 4.35484 4.48801 4.50105 4.51423 4.53338 4.55063 4.59647 4.69300 4.75289 4.84942 4.93153 4.96622 5.10339 5.15787 5.20715 5.26834 5.33794 5.44969 5.48760 5.57084 5.58006 5.64208 5.71758 5.81384 5.95123 6.11533 6.16327 6.78309 6.81377 6.87661 7.34819 7.44057 8.87765 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022942 B = 0.002114 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.198592 B =13239.269736 C =13617.159100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.095 3.905 3 N -0.608 5.608 4 C 0.705 3.295 5 O -0.629 6.629 6 N -0.729 5.729 7 C 0.159 3.841 8 C 0.025 3.975 9 C -0.545 4.545 10 H 0.059 0.941 11 C 0.007 3.993 12 N -0.925 5.925 13 Si 0.965 3.035 14 H -0.266 1.266 15 H -0.275 1.275 16 H -0.278 1.278 17 C 0.124 3.876 18 H 0.111 0.889 19 C -0.131 4.131 20 C 0.088 3.912 21 N -0.548 5.548 22 C 0.149 3.851 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.148 4.148 26 C -0.104 4.104 27 C -0.187 4.187 28 C 0.510 3.490 29 O -0.541 6.541 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.405 0.595 36 H 0.039 0.961 37 H 0.051 0.949 38 H 0.012 0.988 39 H 0.004 0.996 40 H 0.266 0.734 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.124 0.876 44 H 0.106 0.894 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.145 0.855 48 H 0.130 0.870 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.451 -8.277 30.989 32.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 N -0.345 5.345 4 C 0.406 3.594 5 O -0.510 6.510 6 N -0.384 5.384 7 C 0.034 3.966 8 C -0.012 4.012 9 C -0.583 4.583 10 H 0.077 0.923 11 C -0.192 4.192 12 N -0.565 5.565 13 Si 0.790 3.210 14 H -0.190 1.190 15 H -0.200 1.200 16 H -0.204 1.204 17 C 0.016 3.984 18 H 0.129 0.871 19 C -0.170 4.170 20 C -0.032 4.032 21 N -0.272 5.272 22 C 0.056 3.944 23 C -0.171 4.171 24 C -0.110 4.110 25 C -0.166 4.166 26 C -0.122 4.122 27 C -0.207 4.207 28 C 0.297 3.703 29 O -0.417 6.417 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.133 0.867 35 H 0.242 0.758 36 H 0.058 0.942 37 H 0.069 0.931 38 H 0.031 0.969 39 H 0.023 0.977 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.124 0.876 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.163 0.837 48 H 0.148 0.852 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.221 -7.277 30.778 31.705 hybrid contribution -0.703 0.442 -1.323 1.562 sum 1.518 -6.836 29.455 30.276 Atomic orbital electron populations 1.22278 0.96486 1.03342 1.01246 1.21950 0.94051 0.80939 1.05695 1.46899 1.70323 1.14696 1.02606 1.16028 0.78767 0.83538 0.81069 1.90855 1.52252 1.21204 1.86716 1.45369 1.66607 1.21841 1.04572 1.21135 0.99398 0.95077 0.80946 1.19114 0.95671 0.94801 0.91621 1.21475 1.41677 1.03201 0.91947 0.92290 1.25866 0.94583 0.95700 1.03056 1.70066 1.43154 1.15268 1.28021 0.85392 0.78010 0.78831 0.78780 1.19011 1.20029 1.20407 1.21589 0.93761 1.00522 0.82536 0.87124 1.23107 0.95805 0.99715 0.98331 1.22761 0.79311 0.97793 1.03301 1.45849 1.17390 1.37433 1.26487 1.17982 0.89965 0.96401 0.90095 1.21103 1.02537 0.96900 0.96518 1.21376 0.93012 0.99495 0.97074 1.21471 0.98510 0.96324 1.00326 1.21241 0.99048 0.97616 0.94343 1.21577 0.95159 1.02520 1.01484 1.21412 0.88511 0.78673 0.81667 1.90632 1.29907 1.48264 1.72872 0.88899 0.93985 0.94154 0.88723 0.86660 0.75825 0.94224 0.93093 0.96920 0.97732 0.92550 0.86586 0.86433 0.85801 0.87603 0.82609 0.82472 0.83743 0.85172 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 9.99 71.98 0.72 -3.31 16 2 C 0.10 1.84 5.21 86.38 0.45 2.29 16 3 N -0.61 -16.02 2.44 -815.74 -1.99 -18.01 16 4 C 0.70 25.47 8.27 179.05 1.48 26.95 16 5 O -0.63 -27.66 15.75 -3.97 -0.06 -27.73 16 6 N -0.73 -26.75 5.40 -478.53 -2.58 -29.34 16 7 C 0.16 7.05 5.61 86.38 0.48 7.54 16 8 C 0.03 1.30 5.09 29.85 0.15 1.45 16 9 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 10 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -54.32 13.29 21.45 0.28 -54.03 16 13 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 14 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 C 0.12 2.92 3.40 44.99 0.15 3.07 16 18 H 0.11 3.23 7.05 -2.39 -0.02 3.21 16 19 C -0.13 -1.51 6.59 31.65 0.21 -1.30 16 20 C 0.09 0.72 5.42 86.83 0.47 1.19 16 21 N -0.55 -9.61 3.14 -627.69 -1.97 -11.58 16 22 C 0.15 2.77 6.60 38.15 0.25 3.02 16 23 C -0.15 -1.76 9.40 22.39 0.21 -1.55 16 24 C -0.09 -0.94 10.04 22.25 0.22 -0.72 16 25 C -0.15 -1.89 10.04 22.29 0.22 -1.67 16 26 C -0.10 -1.87 10.04 22.25 0.22 -1.65 16 27 C -0.19 -4.34 9.28 22.39 0.21 -4.13 16 28 C 0.51 13.02 5.15 87.90 0.45 13.47 16 29 O -0.54 -18.76 14.17 -3.06 -0.04 -18.80 16 30 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.04 1.14 5.71 -2.39 -0.01 1.12 16 32 H 0.04 1.13 8.04 -2.38 -0.02 1.11 16 33 H 0.09 1.70 6.60 -2.39 -0.02 1.69 16 34 H 0.12 1.42 4.96 -2.38 -0.01 1.41 16 35 H 0.40 12.98 6.20 -92.70 -0.58 12.40 16 36 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.22 16 40 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.12 1.15 8.08 -2.39 -0.02 1.13 16 43 H 0.12 0.29 7.70 -2.39 -0.02 0.27 16 44 H 0.11 0.45 6.32 -2.39 -0.02 0.43 16 45 H 0.16 0.80 7.01 -2.91 -0.02 0.78 16 46 H 0.16 0.62 8.06 -2.91 -0.02 0.60 16 47 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 48 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 49 H 0.12 3.59 5.27 -2.91 -0.02 3.57 16 Total: -1.00 -79.77 391.77 2.67 -77.10 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.40 Total: 21.36 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: 6.61 Total: 15.03 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -6.26 Total: -112.96 kcal Atomic # 8 Polarization: -46.42 SS G_CDS: -0.11 Total: -46.53 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -79.77 2.67 -77.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273165081.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.958 kcal (2) G-P(sol) polarization free energy of solvation -79.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds