Wall clock time and date at job start Wed Apr 1 2020 03:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46778 * 2 1 4 4 C 1.45651 * 117.69990 * 269.97795 * 3 2 1 5 5 C 1.53473 * 110.73535 * 158.00392 * 4 3 2 6 6 N 1.47264 * 107.93432 * 46.91075 * 5 4 3 7 7 C 1.34773 * 121.35229 * 118.51359 * 6 5 4 8 8 O 1.21585 * 120.00059 * 359.71346 * 7 6 5 9 9 N 1.34785 * 120.00270 * 179.71803 * 7 6 5 10 10 C 1.46497 * 120.00133 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47055 * 35.00012 * 10 9 7 12 12 C 1.52998 * 109.46938 * 154.99763 * 10 9 7 13 13 C 1.50704 * 109.47215 * 294.99943 * 12 10 9 14 14 H 1.08000 * 119.99607 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00112 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00317 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47466 * 89.99780 * 17 15 13 19 19 H 1.48504 * 109.47008 * 210.00450 * 17 15 13 20 20 H 1.48508 * 109.46724 * 330.00018 * 17 15 13 21 21 C 1.50700 * 109.47201 * 274.99640 * 10 9 7 22 22 C 1.38231 * 119.99825 * 319.86887 * 21 10 9 23 23 C 1.38243 * 120.00070 * 180.02562 * 22 21 10 24 24 C 1.38235 * 119.99602 * 0.07188 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00292 * 140.00025 * 21 10 9 27 27 C 1.47045 * 117.29534 * 298.24163 * 6 5 4 28 28 C 1.33375 * 117.70625 * 89.99969 * 3 2 1 29 29 O 1.21281 * 118.48923 * 4.27577 * 28 3 2 30 30 H 1.09000 * 109.47219 * 60.00224 * 1 2 3 31 31 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47550 * 300.00030 * 1 2 3 33 33 H 1.09002 * 109.47550 * 239.99969 * 2 1 3 34 34 H 1.09006 * 109.47412 * 119.99371 * 2 1 3 35 35 H 1.09007 * 109.21856 * 278.45460 * 4 3 2 36 36 H 1.09000 * 109.22195 * 37.83401 * 4 3 2 37 37 H 1.09002 * 109.84576 * 287.31501 * 5 4 3 38 38 H 1.09003 * 109.83822 * 166.50629 * 5 4 3 39 39 H 0.97001 * 119.99288 * 359.97438 * 9 7 6 40 40 H 1.09007 * 109.47393 * 54.99975 * 12 10 9 41 41 H 1.09002 * 109.47408 * 174.99952 * 12 10 9 42 42 H 0.96990 * 120.00044 * 179.97438 * 16 15 13 43 43 H 1.08001 * 120.00367 * 0.10906 * 22 21 10 44 44 H 1.08000 * 119.99728 * 180.34119 * 23 22 21 45 45 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 47 47 H 1.08007 * 119.99474 * 359.97438 * 26 21 10 48 48 H 1.08997 * 109.57031 * 162.80690 * 27 6 5 49 49 H 1.09002 * 109.57126 * 283.16783 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2443 2.0195 -1.2896 5 6 2.2143 3.5478 -1.1523 6 7 3.0470 3.9155 0.0054 7 6 4.1400 4.6914 -0.1352 8 8 4.4591 5.0985 -1.2356 9 7 4.8795 5.0159 0.9439 10 6 6.0672 5.8598 0.7911 11 1 5.8916 6.5957 0.0065 12 6 6.3545 6.5795 2.1103 13 6 5.2270 7.5304 2.4197 14 1 4.3891 7.6127 1.7433 15 6 5.2652 8.2951 3.5663 16 7 4.2810 9.1246 3.8366 17 14 6.7141 8.1522 4.7366 18 1 7.7629 9.1290 4.3478 19 1 6.2614 8.4370 6.1220 20 1 7.2699 6.7766 4.6705 21 6 7.2488 5.0014 0.4195 22 6 7.4222 3.7675 1.0181 23 6 8.5064 2.9803 0.6776 24 6 9.4179 3.4278 -0.2603 25 6 9.2451 4.6621 -0.8582 26 6 8.1608 5.4491 -0.5179 27 6 2.6340 3.4068 1.3218 28 6 2.2249 1.9660 1.1808 29 8 2.0758 1.3058 2.1872 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.2153 1.7111 -1.6772 36 1 1.4651 1.7085 -1.9854 37 1 1.1904 3.8848 -0.9907 38 1 2.6156 4.0083 -2.0551 39 1 4.6247 4.6913 1.8218 40 1 6.4422 5.8467 2.9125 41 1 7.2870 7.1374 2.0243 42 1 4.3077 9.6623 4.6434 43 1 6.7099 3.4178 1.7508 44 1 8.6388 2.0139 1.1413 45 1 10.2651 2.8129 -0.5260 46 1 9.9574 5.0119 -1.5907 47 1 8.0262 6.4139 -0.9843 48 1 3.4672 3.4830 2.0204 49 1 1.7911 3.9911 1.6910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273226593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:41 Heat of formation + Delta-G solvation = -22.648175 kcal Electronic energy + Delta-G solvation = -31170.560580 eV Core-core repulsion = 27098.043180 eV Total energy + Delta-G solvation = -4072.517400 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94508 -39.69813 -38.68639 -36.63671 -35.51365 -35.09247 -32.73439 -31.83059 -30.77806 -30.51354 -29.88140 -29.26619 -27.16691 -25.16068 -24.02769 -23.06617 -22.31836 -21.77656 -20.65798 -19.89098 -18.80274 -18.05706 -17.44407 -17.09955 -16.48650 -16.28948 -15.80233 -15.65664 -15.26831 -14.85546 -14.79774 -14.35747 -14.21464 -14.01538 -13.85787 -13.59503 -13.27395 -13.10043 -13.00346 -12.72956 -12.61111 -12.44775 -12.41340 -12.37711 -12.05321 -11.82267 -11.60608 -11.33952 -11.24621 -11.09932 -10.74025 -10.64742 -10.40594 -10.15890 -9.86885 -9.73117 -9.34768 -9.02408 -8.78371 -8.64126 -8.60801 -8.41005 -8.29375 -6.12049 -4.11982 1.66905 1.70626 2.40147 2.52987 2.89718 3.25819 3.34321 3.36460 3.50427 4.01948 4.21620 4.25036 4.37576 4.57053 4.74658 4.83628 4.98051 5.05154 5.09994 5.14441 5.17091 5.18741 5.22054 5.26806 5.33100 5.42132 5.43546 5.56198 5.65936 5.68699 5.80952 5.82965 5.89600 5.98028 6.09557 6.21596 6.28568 6.35919 6.41657 6.72315 6.75861 6.77605 6.90875 6.95834 7.08603 7.18984 7.30121 7.36282 7.63805 7.91336 8.25362 8.42922 8.90234 8.93661 9.48851 11.00616 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003933 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.781384 B = 7116.681080 C = 8878.344323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.600 5.600 4 C 0.099 3.901 5 C 0.117 3.883 6 N -0.638 5.638 7 C 0.716 3.284 8 O -0.588 6.588 9 N -0.714 5.714 10 C 0.212 3.788 11 H 0.094 0.906 12 C -0.015 4.015 13 C -0.520 4.520 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.874 3.126 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.106 4.106 27 C 0.102 3.898 28 C 0.513 3.487 29 O -0.545 6.545 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.396 0.604 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.264 0.736 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.714 -17.070 -10.282 20.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.334 5.334 4 C -0.025 4.025 5 C -0.007 4.007 6 N -0.379 5.379 7 C 0.417 3.583 8 O -0.466 6.466 9 N -0.367 5.367 10 C 0.107 3.893 11 H 0.112 0.888 12 C -0.052 4.052 13 C -0.558 4.558 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.701 3.299 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.078 4.078 22 C -0.126 4.126 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.125 4.125 27 C -0.024 4.024 28 C 0.300 3.700 29 O -0.422 6.422 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.232 0.768 40 H 0.041 0.959 41 H 0.049 0.951 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.140 0.860 48 H 0.132 0.868 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.576 -16.915 -10.413 19.926 hybrid contribution 0.523 -0.099 1.152 1.269 sum -1.054 -17.015 -9.261 19.400 Atomic orbital electron populations 1.22094 0.95645 1.02262 1.02360 1.21525 0.94588 0.82697 1.03469 1.47289 1.65408 1.14641 1.06035 1.21948 1.02268 0.93674 0.84574 1.21854 0.95222 0.92548 0.91035 1.47277 1.28240 1.54921 1.07421 1.15725 0.78952 0.78499 0.85078 1.90880 1.71904 1.58957 1.24828 1.45217 1.28536 1.54456 1.08532 1.19866 0.79302 0.89118 1.01032 0.88847 1.19890 0.98385 0.95966 0.90986 1.20997 1.05660 1.21397 1.07779 0.90577 1.24976 0.95726 0.94731 0.97592 1.69900 1.31886 1.25395 1.26378 0.86873 0.83281 0.79180 0.80536 1.20198 1.21339 1.18950 1.20602 0.96888 0.95176 0.95131 1.20905 0.97591 0.94434 0.99671 1.21050 0.95255 0.99558 0.98454 1.21010 0.99427 0.96639 0.98062 1.21057 0.97977 0.94849 1.00177 1.21037 0.94416 0.99924 0.97095 1.21769 1.03379 0.90448 0.86852 1.20340 0.76879 0.89722 0.83025 1.90745 1.52434 1.63409 1.35623 0.92565 0.91564 0.92168 0.90601 0.89387 0.91108 0.89569 0.90590 0.86741 0.76755 0.95882 0.95067 0.92626 0.86743 0.86753 0.86799 0.86507 0.85964 0.86770 0.87523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.23 37.16 0.38 -0.87 16 2 C 0.10 0.87 5.92 -4.04 -0.02 0.84 16 3 N -0.60 -6.22 2.81 -174.57 -0.49 -6.71 16 4 C 0.10 0.84 6.51 -4.25 -0.03 0.82 16 5 C 0.12 1.23 6.56 -3.38 -0.02 1.21 16 6 N -0.64 -8.71 2.97 -179.59 -0.53 -9.24 16 7 C 0.72 12.49 8.30 -86.91 -0.72 11.77 16 8 O -0.59 -11.96 15.49 5.29 0.08 -11.88 16 9 N -0.71 -12.67 3.94 -59.82 -0.24 -12.90 16 10 C 0.21 4.12 2.11 -69.08 -0.15 3.97 16 11 H 0.09 2.01 7.44 -51.93 -0.39 1.62 16 12 C -0.01 -0.32 3.56 -27.88 -0.10 -0.42 16 13 C -0.52 -13.74 9.39 -34.44 -0.32 -14.07 16 14 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 17 Si 0.87 20.77 27.47 -169.99 -4.67 16.10 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 21 C -0.08 -1.34 4.91 -104.63 -0.51 -1.86 16 22 C -0.11 -1.73 9.32 -39.58 -0.37 -2.10 16 23 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 24 C -0.13 -1.79 10.05 -39.59 -0.40 -2.19 16 25 C -0.12 -1.73 10.05 -39.59 -0.40 -2.12 16 26 C -0.11 -1.73 9.67 -39.58 -0.38 -2.11 16 27 C 0.10 1.29 6.43 -5.02 -0.03 1.26 16 28 C 0.51 6.65 7.57 -11.73 -0.09 6.56 16 29 O -0.54 -8.67 16.18 5.56 0.09 -8.58 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 34 H 0.09 0.92 7.10 -51.93 -0.37 0.55 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.29 7.06 -51.93 -0.37 0.92 16 39 H 0.40 6.57 6.24 -40.82 -0.25 6.31 16 40 H 0.02 0.50 7.20 -51.92 -0.37 0.13 16 41 H 0.03 0.70 7.57 -51.93 -0.39 0.30 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.11 1.75 7.72 -52.49 -0.41 1.34 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 47 H 0.12 1.90 8.04 -52.48 -0.42 1.47 16 48 H 0.11 1.45 5.95 -51.93 -0.31 1.15 16 49 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -33.81 399.38 -10.13 -43.94 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.51 Total: 8.60 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: -3.66 Total: 0.40 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.49 Total: -54.60 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: 0.17 Total: -20.46 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.67 Total: 16.10 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.81 -10.13 -43.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273226593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.295 kcal (2) G-P(sol) polarization free energy of solvation -33.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds