Wall clock time and date at job start Wed Apr 1 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.46778 * 2 1 4 4 C 1.45651 * 117.69990 * 269.97795 * 3 2 1 5 5 C 1.53473 * 110.73535 * 158.00392 * 4 3 2 6 6 N 1.47264 * 107.93432 * 46.91075 * 5 4 3 7 7 C 1.34773 * 121.35229 * 118.51359 * 6 5 4 8 8 O 1.21585 * 120.00059 * 359.71346 * 7 6 5 9 9 N 1.34785 * 120.00270 * 179.71803 * 7 6 5 10 10 C 1.46497 * 120.00133 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47055 * 35.00012 * 10 9 7 12 12 C 1.52998 * 109.46938 * 154.99763 * 10 9 7 13 13 C 1.50704 * 109.47215 * 294.99943 * 12 10 9 14 14 H 1.08000 * 119.99607 * 0.02562 * 13 12 10 15 15 C 1.37872 * 119.99901 * 180.02562 * 13 12 10 16 16 N 1.31522 * 120.00112 * 180.02562 * 15 13 12 17 17 Si 1.86801 * 120.00317 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47466 * 89.99780 * 17 15 13 19 19 H 1.48504 * 109.47008 * 210.00450 * 17 15 13 20 20 H 1.48508 * 109.46724 * 330.00018 * 17 15 13 21 21 C 1.50700 * 109.47201 * 274.99640 * 10 9 7 22 22 C 1.38231 * 119.99825 * 319.86887 * 21 10 9 23 23 C 1.38243 * 120.00070 * 180.02562 * 22 21 10 24 24 C 1.38235 * 119.99602 * 0.07188 * 23 22 21 25 25 C 1.38230 * 120.00326 * 359.97438 * 24 23 22 26 26 C 1.38234 * 120.00292 * 140.00025 * 21 10 9 27 27 C 1.47045 * 117.29534 * 298.24163 * 6 5 4 28 28 C 1.33375 * 117.70625 * 89.99969 * 3 2 1 29 29 O 1.21281 * 118.48923 * 4.27577 * 28 3 2 30 30 H 1.09000 * 109.47219 * 60.00224 * 1 2 3 31 31 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47550 * 300.00030 * 1 2 3 33 33 H 1.09002 * 109.47550 * 239.99969 * 2 1 3 34 34 H 1.09006 * 109.47412 * 119.99371 * 2 1 3 35 35 H 1.09007 * 109.21856 * 278.45460 * 4 3 2 36 36 H 1.09000 * 109.22195 * 37.83401 * 4 3 2 37 37 H 1.09002 * 109.84576 * 287.31501 * 5 4 3 38 38 H 1.09003 * 109.83822 * 166.50629 * 5 4 3 39 39 H 0.97001 * 119.99288 * 359.97438 * 9 7 6 40 40 H 1.09007 * 109.47393 * 54.99975 * 12 10 9 41 41 H 1.09002 * 109.47408 * 174.99952 * 12 10 9 42 42 H 0.96990 * 120.00044 * 179.97438 * 16 15 13 43 43 H 1.08001 * 120.00367 * 0.10906 * 22 21 10 44 44 H 1.08000 * 119.99728 * 180.34119 * 23 22 21 45 45 H 1.08000 * 119.99297 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.00350 * 179.97438 * 25 24 23 47 47 H 1.08007 * 119.99474 * 359.97438 * 26 21 10 48 48 H 1.08997 * 109.57031 * 162.80690 * 27 6 5 49 49 H 1.09002 * 109.57126 * 283.16783 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2443 2.0195 -1.2896 5 6 2.2143 3.5478 -1.1523 6 7 3.0470 3.9155 0.0054 7 6 4.1400 4.6914 -0.1352 8 8 4.4591 5.0985 -1.2356 9 7 4.8795 5.0159 0.9439 10 6 6.0672 5.8598 0.7911 11 1 5.8916 6.5957 0.0065 12 6 6.3545 6.5795 2.1103 13 6 5.2270 7.5304 2.4197 14 1 4.3891 7.6127 1.7433 15 6 5.2652 8.2951 3.5663 16 7 4.2810 9.1246 3.8366 17 14 6.7141 8.1522 4.7366 18 1 7.7629 9.1290 4.3478 19 1 6.2614 8.4370 6.1220 20 1 7.2699 6.7766 4.6705 21 6 7.2488 5.0014 0.4195 22 6 7.4222 3.7675 1.0181 23 6 8.5064 2.9803 0.6776 24 6 9.4179 3.4278 -0.2603 25 6 9.2451 4.6621 -0.8582 26 6 8.1608 5.4491 -0.5179 27 6 2.6340 3.4068 1.3218 28 6 2.2249 1.9660 1.1808 29 8 2.0758 1.3058 2.1872 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8901 35 1 3.2153 1.7111 -1.6772 36 1 1.4651 1.7085 -1.9854 37 1 1.1904 3.8848 -0.9907 38 1 2.6156 4.0083 -2.0551 39 1 4.6247 4.6913 1.8218 40 1 6.4422 5.8467 2.9125 41 1 7.2870 7.1374 2.0243 42 1 4.3077 9.6623 4.6434 43 1 6.7099 3.4178 1.7508 44 1 8.6388 2.0139 1.1413 45 1 10.2651 2.8129 -0.5260 46 1 9.9574 5.0119 -1.5907 47 1 8.0262 6.4139 -0.9843 48 1 3.4672 3.4830 2.0204 49 1 1.7911 3.9911 1.6910 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273226593.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:39 Heat of formation + Delta-G solvation = -43.318261 kcal Electronic energy + Delta-G solvation = -31171.456902 eV Core-core repulsion = 27098.043180 eV Total energy + Delta-G solvation = -4073.413722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.03464 -40.93805 -39.88401 -37.71222 -36.82261 -36.32741 -34.69876 -33.01264 -31.81472 -31.59854 -30.98583 -30.82252 -28.22590 -26.69774 -25.01814 -23.89152 -23.58854 -23.25084 -21.93662 -21.25155 -19.95938 -19.15861 -19.03320 -18.47348 -17.69371 -17.36382 -16.95269 -16.74892 -16.48332 -16.28804 -15.93175 -15.90022 -15.42316 -15.08652 -14.93514 -14.71606 -14.59592 -14.35475 -14.19671 -14.09543 -13.89860 -13.65953 -13.53176 -13.26168 -13.17186 -13.00157 -12.89922 -12.57031 -12.43201 -12.40942 -11.93865 -11.92451 -11.75026 -11.73684 -11.58364 -11.41246 -11.08681 -10.76635 -10.18699 -9.87104 -9.76404 -9.63086 -9.51641 -8.27066 -6.31322 0.49245 0.55602 1.36562 1.37756 1.39180 1.45288 1.49763 1.92462 2.13851 2.36188 2.78347 3.00345 3.10236 3.30262 3.71811 3.90153 3.93272 4.03280 4.10656 4.16580 4.20102 4.25843 4.31652 4.35938 4.37288 4.43975 4.52752 4.58883 4.63733 4.72999 4.76166 4.81802 4.88387 5.01414 5.02146 5.14603 5.17646 5.18061 5.26268 5.29353 5.45270 5.54209 5.57246 5.64512 5.65946 5.72237 5.92014 6.17540 6.27193 6.27713 6.75076 6.85277 6.97460 7.32680 7.52017 8.89016 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008815 B = 0.003933 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.781384 B = 7116.681080 C = 8878.344323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.595 5.595 4 C 0.105 3.895 5 C 0.110 3.890 6 N -0.632 5.632 7 C 0.712 3.288 8 O -0.621 6.621 9 N -0.715 5.715 10 C 0.223 3.777 11 H 0.061 0.939 12 C -0.006 4.006 13 C -0.517 4.517 14 H 0.034 0.966 15 C 0.014 3.986 16 N -0.946 5.946 17 Si 0.941 3.059 18 H -0.271 1.271 19 H -0.286 1.286 20 H -0.244 1.244 21 C -0.098 4.098 22 C -0.120 4.120 23 C -0.125 4.125 24 C -0.127 4.127 25 C -0.121 4.121 26 C -0.127 4.127 27 C 0.102 3.898 28 C 0.513 3.487 29 O -0.580 6.580 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.400 0.600 40 H 0.033 0.967 41 H 0.032 0.968 42 H 0.265 0.735 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.117 0.883 48 H 0.110 0.890 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 -19.876 -11.167 22.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.326 5.326 4 C -0.018 4.018 5 C -0.012 4.012 6 N -0.372 5.372 7 C 0.414 3.586 8 O -0.502 6.502 9 N -0.369 5.369 10 C 0.117 3.883 11 H 0.079 0.921 12 C -0.043 4.043 13 C -0.555 4.555 14 H 0.052 0.948 15 C -0.184 4.184 16 N -0.587 5.587 17 Si 0.765 3.235 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.168 1.168 21 C -0.099 4.099 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.146 4.146 27 C -0.024 4.024 28 C 0.301 3.699 29 O -0.460 6.460 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.124 0.876 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.237 0.763 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.167 0.833 46 H 0.163 0.837 47 H 0.135 0.865 48 H 0.128 0.872 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.007 -19.765 -11.338 22.786 hybrid contribution -0.036 0.747 1.299 1.499 sum -0.043 -19.018 -10.038 21.505 Atomic orbital electron populations 1.22044 0.94583 1.03237 1.01843 1.21699 0.95404 0.81489 1.03929 1.47388 1.64055 1.15357 1.05814 1.22042 1.03809 0.91768 0.84168 1.22135 0.95345 0.94251 0.89494 1.47300 1.27251 1.53776 1.08857 1.15840 0.79628 0.78761 0.84377 1.90845 1.73015 1.60417 1.25910 1.45127 1.28502 1.54279 1.08987 1.19453 0.81101 0.89311 0.98403 0.92086 1.19748 0.96469 0.95327 0.92800 1.21171 1.05603 1.21969 1.06712 0.94766 1.25843 0.98577 0.94382 0.99555 1.70053 1.34348 1.26937 1.27322 0.85804 0.79632 0.80222 0.77866 1.19631 1.21242 1.16785 1.20400 0.96564 0.95941 0.97025 1.21012 0.98673 0.94175 0.99988 1.21396 0.94343 1.00257 0.98327 1.21456 0.99874 0.96387 0.96714 1.21391 0.97382 0.94829 1.00319 1.21188 0.95425 1.00484 0.97480 1.21793 1.03439 0.90931 0.86259 1.20233 0.76831 0.89387 0.83497 1.90730 1.54355 1.63988 1.36968 0.90993 0.89915 0.94658 0.87588 0.91456 0.91137 0.85526 0.88806 0.87502 0.76283 0.94897 0.94968 0.92584 0.86702 0.84059 0.83258 0.83749 0.86506 0.87249 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 10.23 71.98 0.74 -1.32 16 2 C 0.10 1.47 5.92 86.38 0.51 1.98 16 3 N -0.59 -11.32 2.81 -825.39 -2.32 -13.63 16 4 C 0.11 1.52 6.51 86.70 0.56 2.09 16 5 C 0.11 2.20 6.56 86.39 0.57 2.77 16 6 N -0.63 -17.46 2.97 -840.36 -2.50 -19.96 16 7 C 0.71 25.81 8.30 179.05 1.49 27.30 16 8 O -0.62 -26.32 15.49 -3.99 -0.06 -26.38 16 9 N -0.72 -26.52 3.94 -461.42 -1.82 -28.34 16 10 C 0.22 9.05 2.11 44.25 0.09 9.14 16 11 H 0.06 2.83 7.44 -2.39 -0.02 2.81 16 12 C -0.01 -0.26 3.56 29.85 0.11 -0.15 16 13 C -0.52 -28.41 9.39 25.60 0.24 -28.17 16 14 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 15 C 0.01 0.78 5.47 84.65 0.46 1.25 16 16 N -0.95 -57.91 13.96 21.45 0.30 -57.61 16 17 Si 0.94 43.02 27.47 68.60 1.88 44.90 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 21 C -0.10 -3.45 4.91 -19.87 -0.10 -3.55 16 22 C -0.12 -3.73 9.32 22.27 0.21 -3.52 16 23 C -0.13 -3.18 10.05 22.27 0.22 -2.95 16 24 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 25 C -0.12 -3.12 10.05 22.27 0.22 -2.89 16 26 C -0.13 -4.11 9.67 22.27 0.22 -3.90 16 27 C 0.10 2.62 6.43 85.45 0.55 3.17 16 28 C 0.51 13.16 7.57 87.79 0.66 13.82 16 29 O -0.58 -18.69 16.18 -3.03 -0.05 -18.74 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 1.01 8.01 -2.39 -0.02 0.99 16 34 H 0.07 1.35 7.10 -2.38 -0.02 1.33 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.13 0.91 8.07 -2.39 -0.02 0.89 16 37 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.11 2.36 7.06 -2.39 -0.02 2.35 16 39 H 0.40 13.87 6.24 -92.71 -0.58 13.29 16 40 H 0.03 1.42 7.20 -2.38 -0.02 1.40 16 41 H 0.03 1.44 7.57 -2.39 -0.02 1.43 16 42 H 0.27 15.25 8.31 -92.72 -0.77 14.48 16 43 H 0.11 3.44 7.72 -2.91 -0.02 3.42 16 44 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 45 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 46 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 47 H 0.12 3.75 8.04 -2.91 -0.02 3.73 16 48 H 0.11 2.90 5.95 -2.39 -0.01 2.89 16 49 H 0.11 2.75 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -76.95 399.38 2.74 -74.21 By element: Atomic # 1 Polarization: 32.85 SS G_CDS: 0.32 Total: 33.17 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.98 Total: 12.37 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.33 Total: -119.54 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.11 Total: -45.11 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Total: -76.95 2.74 -74.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273226593.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.893 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds