Wall clock time and date at job start Wed Apr 1 2020 03:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47449 * 2 1 4 4 C 1.46008 * 118.53282 * 90.00408 * 3 2 1 5 5 C 1.52982 * 110.04458 * 161.84048 * 4 3 2 6 6 N 1.47189 * 108.72868 * 50.28669 * 5 4 3 7 7 C 1.46897 * 111.00143 * 167.63631 * 6 5 4 8 8 C 1.50705 * 109.47014 * 56.84850 * 7 6 5 9 9 O 1.21277 * 119.99706 * 5.86580 * 8 7 6 10 10 N 1.34775 * 119.99883 * 185.86938 * 8 7 6 11 11 C 1.46497 * 119.99900 * 185.18950 * 10 8 7 12 12 C 1.50702 * 109.47206 * 89.99541 * 11 10 8 13 13 H 1.08000 * 120.00005 * 0.02562 * 12 11 10 14 14 C 1.37882 * 119.99928 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99872 * 0.02562 * 14 12 11 16 16 Si 1.86793 * 119.99825 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47048 * 90.00449 * 16 14 12 18 18 H 1.48506 * 109.47319 * 210.00549 * 16 14 12 19 19 H 1.48503 * 109.47712 * 330.00618 * 16 14 12 20 20 C 1.39928 * 120.00175 * 5.18584 * 10 8 7 21 21 C 1.38870 * 120.06844 * 289.99636 * 20 10 8 22 22 C 1.38121 * 119.92487 * 179.76722 * 21 20 10 23 23 C 1.38283 * 120.06868 * 0.48439 * 22 21 20 24 24 C 1.38279 * 120.14487 * 359.76366 * 23 22 21 25 25 C 1.38118 * 120.06875 * 0.02562 * 24 23 22 26 26 C 1.46896 * 110.17768 * 291.00748 * 6 5 4 27 27 C 1.33571 * 118.57932 * 270.09495 * 3 2 1 28 28 O 1.21279 * 118.51993 * 1.66621 * 27 3 2 29 29 H 1.09000 * 109.47144 * 59.99267 * 1 2 3 30 30 H 1.08995 * 109.47217 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46752 * 299.99772 * 1 2 3 32 32 H 1.09002 * 109.46752 * 240.00228 * 2 1 3 33 33 H 1.09000 * 109.47144 * 120.00733 * 2 1 3 34 34 H 1.09003 * 109.37676 * 41.66049 * 4 3 2 35 35 H 1.09006 * 109.28273 * 281.95381 * 4 3 2 36 36 H 1.09004 * 109.59364 * 290.51949 * 5 4 3 37 37 H 1.08993 * 109.59942 * 170.06380 * 5 4 3 38 38 H 1.09003 * 109.47218 * 176.85013 * 7 6 5 39 39 H 1.09001 * 109.47454 * 296.84967 * 7 6 5 40 40 H 1.09003 * 109.47223 * 210.00102 * 11 10 8 41 41 H 1.09000 * 109.47315 * 329.99702 * 11 10 8 42 42 H 0.97001 * 119.99475 * 180.02562 * 15 14 12 43 43 H 1.07997 * 120.04311 * 359.97302 * 21 20 10 44 44 H 1.07996 * 119.96172 * 180.25657 * 22 21 20 45 45 H 1.08004 * 119.92665 * 179.74964 * 23 22 21 46 46 H 1.07997 * 119.97041 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.03516 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.38958 * 170.45641 * 26 6 5 49 49 H 1.09008 * 109.38635 * 290.24362 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2510 2.0387 1.2827 5 6 3.1567 3.2566 1.0911 6 7 2.6152 4.0811 -0.0013 7 6 3.2646 5.3982 -0.0385 8 6 4.7546 5.2198 -0.1770 9 8 5.2197 4.1125 -0.3455 10 7 5.5703 6.2909 -0.1136 11 6 7.0056 6.1341 -0.3611 12 6 7.2858 6.3237 -1.8297 13 1 6.4757 6.5398 -2.5104 14 6 8.5765 6.2223 -2.3039 15 7 9.5630 5.9597 -1.4748 16 14 8.9238 6.4580 -4.1241 17 1 9.2020 7.8917 -4.3933 18 1 10.1033 5.6435 -4.5126 19 1 7.7425 6.0263 -4.9136 20 6 5.0461 7.5526 0.1887 21 6 4.2409 8.2102 -0.7320 22 6 3.7211 9.4535 -0.4287 23 6 4.0100 10.0476 0.7862 24 6 4.8156 9.3975 1.7030 25 6 5.3349 8.1523 1.4075 26 6 2.7657 3.3834 -1.2852 27 6 2.2296 1.9842 -1.1730 28 8 1.9793 1.3744 -2.1910 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.7280 1.3373 1.9674 35 1 1.2969 2.3598 1.7009 36 1 4.1637 2.9266 0.8353 37 1 3.1837 3.8405 2.0110 38 1 2.8860 5.9661 -0.8885 39 1 3.0473 5.9366 0.8839 40 1 7.5568 6.8788 0.2131 41 1 7.3199 5.1356 -0.0572 42 1 10.4710 5.8888 -1.8085 43 1 4.0186 7.7488 -1.6828 44 1 3.0915 9.9636 -1.1425 45 1 3.6056 11.0215 1.0193 46 1 5.0398 9.8643 2.6507 47 1 5.9645 7.6452 2.1237 48 1 2.2142 3.9214 -2.0563 49 1 3.8212 3.3458 -1.5550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273516957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:34 Heat of formation + Delta-G solvation = -38.015521 kcal Electronic energy + Delta-G solvation = -31250.915274 eV Core-core repulsion = 27177.731495 eV Total energy + Delta-G solvation = -4073.183778 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.08034 -41.15724 -39.71150 -37.99633 -36.85421 -36.22637 -34.83484 -32.60120 -31.79957 -30.95306 -30.72541 -30.00546 -28.57912 -26.18319 -24.95047 -24.42299 -23.67100 -23.33101 -23.05038 -20.54304 -19.71157 -18.76529 -18.39454 -18.23991 -17.89670 -17.50078 -17.05858 -16.87746 -16.50296 -16.31483 -15.96237 -15.72428 -15.40729 -15.10988 -14.88260 -14.71528 -14.53371 -14.32162 -14.24193 -14.11359 -13.75197 -13.56751 -13.39392 -13.26971 -13.11540 -12.90146 -12.71576 -12.68240 -12.53705 -12.49012 -12.35616 -12.10733 -12.06385 -11.83913 -11.73566 -11.53233 -10.96434 -10.70775 -10.13338 -9.79601 -9.79057 -9.42703 -9.23592 -8.29184 -6.43645 0.39121 0.54202 1.31335 1.34030 1.43370 1.47094 1.59499 1.95870 2.15918 2.35344 2.61042 2.89883 3.01389 3.46020 3.56386 3.78114 3.89940 4.10382 4.14814 4.16253 4.26387 4.35181 4.36094 4.38694 4.44155 4.50723 4.55081 4.56235 4.63773 4.67088 4.70174 4.77192 4.81086 4.99918 5.01342 5.02849 5.11198 5.19244 5.27717 5.40295 5.43759 5.48831 5.57357 5.66785 5.67051 5.68734 5.76170 5.97079 6.10532 6.32433 6.61286 6.69556 7.02533 7.18432 7.32284 8.77886 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.003753 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.829703 B = 7459.702596 C = 9418.879437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.099 3.901 3 N -0.599 5.599 4 C 0.124 3.876 5 C 0.012 3.988 6 N -0.491 5.491 7 C 0.049 3.951 8 C 0.477 3.523 9 O -0.573 6.573 10 N -0.560 5.560 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.052 0.948 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.963 3.037 17 H -0.263 1.263 18 H -0.280 1.280 19 H -0.273 1.273 20 C 0.122 3.878 21 C -0.132 4.132 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.104 4.104 25 C -0.137 4.137 26 C 0.026 3.974 27 C 0.523 3.477 28 O -0.596 6.596 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.108 0.892 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.047 0.953 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.133 0.867 40 H 0.017 0.983 41 H 0.005 0.995 42 H 0.268 0.732 43 H 0.115 0.885 44 H 0.152 0.848 45 H 0.158 0.842 46 H 0.151 0.849 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.013 2.538 11.144 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.023 4.023 3 N -0.331 5.331 4 C 0.002 3.998 5 C -0.116 4.116 6 N -0.214 5.214 7 C -0.083 4.083 8 C 0.266 3.734 9 O -0.454 6.454 10 N -0.287 5.287 11 C 0.147 3.853 12 C -0.580 4.580 13 H 0.070 0.930 14 C -0.188 4.188 15 N -0.565 5.565 16 Si 0.787 3.213 17 H -0.188 1.188 18 H -0.205 1.205 19 H -0.198 1.198 20 C 0.032 3.968 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.157 4.157 26 C -0.105 4.105 27 C 0.312 3.688 28 O -0.478 6.478 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.035 0.965 41 H 0.023 0.977 42 H 0.077 0.923 43 H 0.133 0.867 44 H 0.170 0.830 45 H 0.175 0.825 46 H 0.169 0.831 47 H 0.131 0.869 48 H 0.131 0.869 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.202 1.651 10.665 22.027 hybrid contribution 2.148 -0.305 -1.403 2.584 sum -17.054 1.346 9.262 19.453 Atomic orbital electron populations 1.22004 0.94442 1.03116 1.01729 1.21671 0.95716 0.81381 1.03498 1.47580 1.64192 1.15050 1.06257 1.21743 1.00818 0.93472 0.83786 1.22865 0.97730 0.95362 0.95656 1.63153 1.52694 1.02614 1.02934 1.22451 0.85791 0.92945 1.07064 1.22594 0.91389 0.83648 0.75764 1.90589 1.78393 1.25497 1.50893 1.45903 1.09276 1.06538 1.67000 1.18773 0.75576 0.95544 0.95415 1.21612 0.93352 1.49052 0.93968 0.92972 1.25788 0.95784 0.94461 1.02734 1.70036 1.00496 1.49236 1.36747 0.85479 0.77737 0.78764 0.79278 1.18830 1.20529 1.19795 1.17970 0.97855 0.86463 0.94518 1.21409 0.99377 0.96478 0.97940 1.21346 0.99307 0.93551 0.97920 1.21556 0.97805 1.00898 0.93330 1.21323 0.96745 0.93218 1.00943 1.21373 1.01277 0.97538 0.95499 1.22396 1.02066 0.91561 0.94475 1.20132 0.76750 0.88519 0.83416 1.90658 1.54609 1.66145 1.36368 0.94865 0.89799 0.91009 0.92281 0.87424 0.87777 0.88570 0.93498 0.86836 0.86254 0.84972 0.96484 0.97702 0.92344 0.86728 0.83036 0.82474 0.83121 0.86892 0.86925 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 10.23 71.98 0.74 -1.98 16 2 C 0.10 2.08 5.98 86.38 0.52 2.59 16 3 N -0.60 -15.37 2.82 -825.46 -2.33 -17.70 16 4 C 0.12 2.34 6.62 86.47 0.57 2.92 16 5 C 0.01 0.29 4.93 86.24 0.43 0.72 16 6 N -0.49 -13.25 4.94 -905.47 -4.48 -17.73 16 7 C 0.05 1.34 4.40 85.56 0.38 1.71 16 8 C 0.48 18.72 6.93 87.66 0.61 19.32 16 9 O -0.57 -27.19 11.19 -3.02 -0.03 -27.22 16 10 N -0.56 -23.47 2.50 -635.31 -1.59 -25.05 16 11 C 0.27 14.35 5.16 85.63 0.44 14.79 16 12 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 13 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 14 C 0.01 0.68 5.46 84.66 0.46 1.14 16 15 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 16 Si 0.96 45.44 29.54 68.60 2.03 47.47 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 20 C 0.12 4.09 4.31 38.15 0.16 4.26 16 21 C -0.13 -3.76 8.57 22.39 0.19 -3.57 16 22 C -0.10 -2.12 10.04 22.25 0.22 -1.90 16 23 C -0.12 -2.11 10.04 22.29 0.22 -1.89 16 24 C -0.10 -2.17 10.04 22.25 0.22 -1.94 16 25 C -0.14 -3.95 9.76 22.39 0.22 -3.73 16 26 C 0.03 0.85 5.35 85.42 0.46 1.30 16 27 C 0.52 17.68 7.55 87.71 0.66 18.34 16 28 O -0.60 -24.18 16.32 -3.03 -0.05 -24.23 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.55 7.26 -2.39 -0.02 1.53 16 33 H 0.11 1.54 7.92 -2.39 -0.02 1.52 16 34 H 0.10 1.47 7.98 -2.39 -0.02 1.45 16 35 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.05 1.58 5.70 -2.38 -0.01 1.57 16 37 H 0.11 2.25 8.06 -2.39 -0.02 2.23 16 38 H 0.12 3.01 7.14 -2.39 -0.02 2.99 16 39 H 0.13 2.95 7.84 -2.39 -0.02 2.94 16 40 H 0.02 0.96 7.91 -2.39 -0.02 0.94 16 41 H 0.00 0.30 7.36 -2.39 -0.02 0.28 16 42 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.11 3.37 7.77 -2.91 -0.02 3.35 16 44 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 47 H 0.11 3.37 8.06 -2.91 -0.02 3.35 16 48 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 49 H 0.07 2.93 5.59 -2.38 -0.01 2.92 16 Total: -1.00 -79.75 396.27 1.52 -78.23 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.94 Total: 20.92 kcal Atomic # 6 Polarization: 14.35 SS G_CDS: 6.74 Total: 21.10 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -8.11 Total: -116.26 kcal Atomic # 8 Polarization: -51.37 SS G_CDS: -0.08 Total: -51.45 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -79.75 1.52 -78.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273516957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.216 kcal (2) G-P(sol) polarization free energy of solvation -79.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds