Wall clock time and date at job start Wed Apr 1 2020 05:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 N 1.46494 * 109.47017 * 2 1 4 4 C 1.34779 * 119.99798 * 179.97438 * 3 2 1 5 5 O 1.21283 * 120.00162 * 354.97402 * 4 3 2 6 6 C 1.50701 * 119.99838 * 174.69625 * 4 3 2 7 7 C 1.53003 * 112.84967 * 293.95177 * 6 4 3 8 8 N 1.46502 * 109.47104 * 303.08512 * 7 6 4 9 9 C 1.34774 * 120.00132 * 174.93147 * 8 7 6 10 10 O 1.21582 * 120.00097 * 0.02562 * 9 8 7 11 11 N 1.34772 * 120.00112 * 179.97438 * 9 8 7 12 12 C 1.39244 * 120.00206 * 185.17395 * 11 9 8 13 13 C 1.39479 * 119.83386 * 214.14929 * 12 11 9 14 14 C 1.36378 * 120.17008 * 179.75598 * 13 12 11 15 15 C 1.40869 * 119.82462 * 0.51204 * 14 13 12 16 16 C 1.41156 * 120.16181 * 179.72019 * 15 14 13 17 17 H 1.08001 * 120.00063 * 213.80200 * 16 15 14 18 18 C 1.39891 * 120.00239 * 33.79826 * 16 15 14 19 19 N 1.30880 * 119.99881 * 5.92798 * 18 16 15 20 20 Si 1.86805 * 120.00285 * 185.92423 * 18 16 15 21 21 H 1.48501 * 109.46928 * 90.00095 * 20 18 16 22 22 H 1.48503 * 109.46898 * 210.00216 * 20 18 16 23 23 H 1.48500 * 109.46770 * 330.00186 * 20 18 16 24 24 C 1.40868 * 119.67419 * 359.73657 * 15 14 13 25 25 C 1.36371 * 119.82796 * 0.02562 * 24 15 14 26 26 C 1.53783 * 113.61362 * 162.64720 * 6 4 3 27 27 C 1.53785 * 87.07885 * 220.01847 * 26 6 4 28 28 C 1.53776 * 113.61475 * 65.14899 * 6 4 3 29 29 H 1.08998 * 109.46634 * 60.00380 * 1 2 3 30 30 H 1.08995 * 109.47057 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47148 * 300.00573 * 1 2 3 32 32 H 1.08992 * 109.47148 * 239.99427 * 2 1 3 33 33 H 1.08998 * 109.46634 * 119.99619 * 2 1 3 34 34 H 0.96996 * 120.00610 * 359.97438 * 3 2 1 35 35 H 1.08998 * 109.47360 * 63.08619 * 7 6 4 36 36 H 1.09004 * 109.47091 * 183.08779 * 7 6 4 37 37 H 0.96997 * 119.99918 * 354.92698 * 8 7 6 38 38 H 0.96999 * 120.00156 * 5.16751 * 11 9 8 39 39 H 1.07999 * 119.91463 * 0.02562 * 13 12 11 40 40 H 1.08004 * 120.08609 * 180.24820 * 14 13 12 41 41 H 0.97006 * 119.99974 * 179.97438 * 19 18 16 42 42 H 1.08004 * 120.08499 * 179.97438 * 24 15 14 43 43 H 1.08003 * 119.91806 * 179.97438 * 25 24 15 44 44 H 1.08998 * 113.61001 * 334.56348 * 26 6 4 45 45 H 1.09000 * 113.61700 * 105.46936 * 26 6 4 46 46 H 1.08994 * 113.61091 * 270.88030 * 27 26 6 47 47 H 1.08997 * 113.61303 * 139.97790 * 27 26 6 48 48 H 1.09004 * 113.61357 * 254.52931 * 28 6 4 49 49 H 1.08997 * 113.61608 * 25.43052 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1309 0.7096 0.0930 6 6 3.8469 3.0427 -0.1201 7 6 3.5282 3.6730 -1.4774 8 7 4.0919 2.8436 -2.5454 9 6 3.8484 3.1488 -3.8353 10 8 3.1614 4.1128 -4.1127 11 7 4.3674 2.3861 -4.8178 12 6 4.2067 2.7613 -6.1491 13 6 4.0601 1.7834 -7.1328 14 6 3.8973 2.1433 -8.4381 15 6 3.8883 3.5065 -8.7931 16 6 3.7262 3.8869 -10.1428 17 1 4.2263 4.7669 -10.5196 18 6 2.9180 3.1240 -10.9923 19 7 2.2207 2.1266 -10.5108 20 14 2.8339 3.5289 -12.8140 21 1 3.8841 2.7694 -13.5389 22 1 1.4978 3.1543 -13.3431 23 1 3.0528 4.9848 -13.0081 24 6 4.0421 4.4882 -7.7946 25 6 4.1991 4.1130 -6.4930 26 6 5.3129 3.2141 0.3118 27 6 4.8829 4.5370 0.9674 28 6 3.4725 3.9338 1.0760 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.3882 2.1185 -0.0004 35 1 2.4475 3.7406 -1.6019 36 1 3.9627 4.6716 -1.5253 37 1 4.6404 2.0748 -2.3241 38 1 4.8529 1.5757 -4.5976 39 1 4.0712 0.7386 -6.8595 40 1 3.7800 1.3851 -9.1982 41 1 1.6599 1.5978 -11.0998 42 1 4.0366 5.5353 -8.0594 43 1 4.3176 4.8645 -5.7263 44 1 5.6484 2.4618 1.0256 45 1 6.0017 3.3441 -0.5229 46 1 4.9404 5.3951 0.2978 47 1 5.3551 4.7196 1.9327 48 1 2.6755 4.6448 0.8582 49 1 3.3050 3.3783 1.9987 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276750959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:11 Heat of formation + Delta-G solvation = -52.123437 kcal Electronic energy + Delta-G solvation = -29816.749018 eV Core-core repulsion = 25742.953475 eV Total energy + Delta-G solvation = -4073.795543 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.01129 -41.15248 -39.30860 -38.83827 -36.32400 -36.20142 -35.41354 -34.60282 -31.73078 -31.48780 -30.81746 -29.04556 -26.84150 -26.60917 -25.62254 -23.71607 -23.40520 -22.66344 -22.03671 -21.63120 -20.02665 -19.35312 -19.08639 -18.63596 -17.81818 -17.26055 -17.03747 -16.64598 -16.52954 -16.23952 -16.00919 -15.69406 -15.44761 -15.15785 -14.90946 -14.73797 -14.52133 -14.12111 -13.94232 -13.68746 -13.59675 -13.48634 -13.26492 -13.21471 -12.90808 -12.79580 -12.75411 -12.73371 -12.46776 -12.41794 -12.20647 -11.78416 -11.51590 -11.38764 -11.33913 -11.25335 -11.07735 -10.72650 -10.68839 -10.13555 -10.11033 -9.46832 -8.71042 -8.51735 -6.28905 0.84958 1.13790 1.40510 1.47846 1.50797 1.54126 1.70234 2.17583 2.20229 2.25710 2.82228 3.21002 3.33356 3.51265 3.62926 3.70924 3.79720 3.87984 4.11277 4.17961 4.37807 4.44628 4.46505 4.48689 4.52130 4.65469 4.78177 4.84881 4.91067 4.92381 5.00989 5.03122 5.09976 5.10665 5.13405 5.15183 5.22108 5.32110 5.38349 5.42625 5.43850 5.46552 5.64447 5.77626 6.03364 6.10262 6.19535 6.39768 6.48740 6.68109 6.97406 7.01392 7.05369 7.17488 7.60707 8.44042 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016771 B = 0.002176 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.171277 B =12864.874861 C =13838.480508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.111 3.889 3 N -0.719 5.719 4 C 0.528 3.472 5 O -0.576 6.576 6 C -0.119 4.119 7 C 0.170 3.830 8 N -0.733 5.733 9 C 0.697 3.303 10 O -0.617 6.617 11 N -0.662 5.662 12 C 0.042 3.958 13 C -0.120 4.120 14 C -0.155 4.155 15 C 0.072 3.928 16 C -0.500 4.500 17 H 0.074 0.926 18 C 0.029 3.971 19 N -0.842 5.842 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.219 4.219 25 C -0.092 4.092 26 C -0.116 4.116 27 C -0.134 4.134 28 C -0.108 4.108 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.064 0.936 34 H 0.412 0.588 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.411 0.589 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.097 0.903 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.098 0.902 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.563 -1.720 24.618 24.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.012 4.012 3 N -0.370 5.370 4 C 0.314 3.686 5 O -0.455 6.455 6 C -0.123 4.123 7 C 0.046 3.954 8 N -0.389 5.389 9 C 0.398 3.602 10 O -0.498 6.498 11 N -0.309 5.309 12 C -0.052 4.052 13 C -0.141 4.141 14 C -0.175 4.175 15 C 0.069 3.931 16 C -0.531 4.531 17 H 0.092 0.908 18 C -0.183 4.183 19 N -0.470 5.470 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.239 4.239 25 C -0.112 4.112 26 C -0.154 4.154 27 C -0.171 4.171 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.248 0.752 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.239 0.761 38 H 0.247 0.753 39 H 0.139 0.861 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.117 0.883 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.817 -1.694 24.417 24.489 hybrid contribution -0.012 -0.511 -0.842 0.985 sum -0.828 -2.205 23.575 23.692 Atomic orbital electron populations 1.21959 0.92347 1.04108 1.03109 1.21347 0.95985 0.82558 1.01337 1.46044 1.06948 1.09652 1.74395 1.20632 0.82412 0.90793 0.74714 1.90688 1.56469 1.47298 1.51082 1.22432 1.00871 0.92145 0.96850 1.20949 0.99096 0.93720 0.81679 1.44934 1.56902 1.33944 1.03132 1.16058 0.79990 0.82908 0.81270 1.90905 1.44366 1.31545 1.82938 1.41957 1.57753 1.28014 1.03204 1.17038 1.13071 0.92787 0.82313 1.20460 1.03111 0.97703 0.92812 1.20899 1.05163 0.96390 0.95061 1.17982 0.89493 0.91971 0.93641 1.19715 1.27345 1.10945 0.95066 0.90816 1.26718 0.92927 0.93377 1.05277 1.69862 1.21708 1.16679 1.38721 0.85136 0.78513 0.79650 0.75942 1.18499 1.19492 1.18515 1.20894 1.12119 0.98092 0.92758 1.20365 1.00864 0.94597 0.95373 1.22857 0.92820 0.98765 1.00969 1.22858 0.95766 0.96415 1.02097 1.22923 0.99229 0.97447 0.94954 0.92171 0.89871 0.90571 0.93282 0.91800 0.75159 0.90906 0.90037 0.76061 0.75315 0.86148 0.87361 0.90468 0.88447 0.87765 0.89643 0.91225 0.89143 0.89465 0.88340 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 10.03 71.99 0.72 -0.86 16 2 C 0.11 1.70 6.40 86.38 0.55 2.26 16 3 N -0.72 -11.04 5.55 -463.06 -2.57 -13.61 16 4 C 0.53 10.30 6.09 87.66 0.53 10.83 16 5 O -0.58 -15.52 16.18 -3.04 -0.05 -15.57 16 6 C -0.12 -1.82 0.79 -52.40 -0.04 -1.86 16 7 C 0.17 3.35 4.95 86.38 0.43 3.78 16 8 N -0.73 -18.25 5.31 -478.53 -2.54 -20.79 16 9 C 0.70 24.40 8.28 179.06 1.48 25.88 16 10 O -0.62 -26.93 14.06 -3.97 -0.06 -26.99 16 11 N -0.66 -23.38 5.31 -316.79 -1.68 -25.06 16 12 C 0.04 1.89 6.27 38.56 0.24 2.13 16 13 C -0.12 -5.57 9.89 22.13 0.22 -5.35 16 14 C -0.16 -8.25 8.57 22.48 0.19 -8.06 16 15 C 0.07 4.01 5.51 -21.28 -0.12 3.89 16 16 C -0.50 -27.84 9.03 23.39 0.21 -27.63 16 17 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16 18 C 0.03 1.52 5.30 85.24 0.45 1.97 16 19 N -0.84 -45.39 10.94 21.82 0.24 -45.15 16 20 Si 0.99 39.54 29.56 68.60 2.03 41.57 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 23 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 24 C -0.22 -11.57 9.74 22.48 0.22 -11.35 16 25 C -0.09 -4.51 8.57 22.13 0.19 -4.32 16 26 C -0.12 -1.75 6.90 31.12 0.21 -1.53 16 27 C -0.13 -1.37 7.73 31.12 0.24 -1.13 16 28 C -0.11 -1.01 7.22 31.12 0.22 -0.78 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 4.48 8.48 -92.71 -0.79 3.69 16 35 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.61 7.31 -2.38 -0.02 1.59 16 37 H 0.40 9.08 8.15 -92.71 -0.76 8.32 16 38 H 0.41 11.46 8.83 -92.71 -0.82 10.64 16 39 H 0.12 4.75 8.06 -2.91 -0.02 4.72 16 40 H 0.11 5.97 6.43 -2.91 -0.02 5.95 16 41 H 0.28 13.94 8.30 -92.70 -0.77 13.17 16 42 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 43 H 0.10 5.05 6.46 -2.91 -0.02 5.03 16 44 H 0.08 1.44 7.73 -2.39 -0.02 1.43 16 45 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 46 H 0.09 0.92 7.60 -2.39 -0.02 0.90 16 47 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 0.64 8.10 -2.38 -0.02 0.62 16 49 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 Total: -1.00 -73.37 404.03 -0.03 -73.40 By element: Atomic # 1 Polarization: 45.71 SS G_CDS: -1.36 Total: 44.35 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: 5.97 Total: -12.14 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -6.56 Total: -104.62 kcal Atomic # 8 Polarization: -42.45 SS G_CDS: -0.11 Total: -42.56 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -73.37 -0.03 -73.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276750959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.274 kcal (2) G-P(sol) polarization free energy of solvation -73.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds