Wall clock time and date at job start Wed Apr 1 2020 04:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46978 * 2 1 4 4 C 1.46506 * 119.99431 * 269.99960 * 3 2 1 5 5 C 1.50699 * 109.47299 * 269.99934 * 4 3 2 6 6 H 1.08005 * 119.99894 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00317 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47076 * 119.99938 * 9 7 5 12 12 H 1.48507 * 109.47276 * 239.99971 * 9 7 5 13 13 C 1.34774 * 120.00346 * 90.00044 * 3 2 1 14 14 O 1.21278 * 120.00076 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99726 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.46874 * 179.97438 * 15 13 3 17 17 C 1.46895 * 111.00212 * 66.04534 * 16 15 13 18 18 C 1.46906 * 111.00098 * 190.00127 * 16 15 13 19 19 C 1.50695 * 109.47212 * 164.40242 * 18 16 15 20 20 N 1.30826 * 125.96574 * 95.58831 * 19 18 16 21 21 C 1.33244 * 109.83202 * 180.12345 * 20 19 18 22 22 N 1.30712 * 108.94128 * 359.58792 * 21 20 19 23 23 N 1.34436 * 125.95557 * 275.25483 * 19 18 16 24 24 C 1.46493 * 126.82799 * 0.02562 * 23 19 18 25 25 C 1.53002 * 109.47132 * 265.03840 * 24 23 19 26 26 F 1.39905 * 109.46958 * 174.77610 * 25 24 23 27 27 F 1.39900 * 109.47190 * 294.77014 * 25 24 23 28 28 H 1.08999 * 109.47228 * 299.99990 * 1 2 3 29 29 H 1.08994 * 109.47326 * 60.00130 * 1 2 3 30 30 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47228 * 240.00010 * 2 1 3 32 32 H 1.09003 * 109.47122 * 120.00037 * 2 1 3 33 33 H 1.08996 * 109.47437 * 30.00105 * 4 3 2 34 34 H 1.09000 * 109.46831 * 150.00101 * 4 3 2 35 35 H 0.97005 * 119.99627 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47159 * 60.00052 * 15 13 3 37 37 H 1.08998 * 109.47065 * 299.99871 * 15 13 3 38 38 H 1.08997 * 109.47597 * 189.21165 * 17 16 15 39 39 H 1.08998 * 109.47389 * 309.21825 * 17 16 15 40 40 H 1.08999 * 109.47177 * 69.21110 * 17 16 15 41 41 H 1.09001 * 109.46706 * 44.39477 * 18 16 15 42 42 H 1.08997 * 109.46800 * 284.40057 * 18 16 15 43 43 H 1.08001 * 125.52738 * 179.85663 * 21 20 19 44 44 H 1.09001 * 109.47428 * 25.03195 * 24 23 19 45 45 H 1.08997 * 109.47626 * 145.03464 * 24 23 19 46 46 H 1.08998 * 109.47173 * 54.77547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3426 1.2302 -1.0963 7 6 4.1493 2.3903 -2.8776 8 7 3.3495 3.1271 -3.6173 9 14 5.9133 2.0962 -3.4172 10 1 6.6007 1.2404 -2.4172 11 1 5.9203 1.4180 -4.7382 12 1 6.6215 3.3971 -3.5250 13 6 2.2430 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3102 2.2062 3.5888 17 6 1.3846 3.3462 3.6271 18 6 2.3061 1.4816 4.8667 19 6 2.9958 2.3126 5.9176 20 7 2.4097 3.1095 6.7738 21 6 3.3236 3.6870 7.5527 22 7 4.5086 3.2568 7.2070 23 7 4.3203 2.3597 6.1430 24 6 5.3604 1.6217 5.4222 25 6 5.6890 0.3333 6.1791 26 9 6.5942 -0.4284 5.4322 27 9 6.2579 0.6517 7.4170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0954 3.1410 -1.1386 35 1 3.6758 3.5182 -4.4429 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0127 2.5298 38 1 1.7379 4.0770 4.3545 39 1 1.3367 3.8087 2.6412 40 1 0.3920 2.9989 3.9138 41 1 2.8326 0.5345 4.7489 42 1 1.2775 1.2899 5.1723 43 1 3.1183 4.3924 8.3443 44 1 5.0040 1.3747 4.4222 45 1 6.2567 2.2374 5.3467 46 1 4.7749 -0.2393 6.3358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279002661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:26 Heat of formation + Delta-G solvation = -28.883033 kcal Electronic energy + Delta-G solvation = -31174.673954 eV Core-core repulsion = 26579.949412 eV Total energy + Delta-G solvation = -4594.724542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.39101 -47.39334 -42.38704 -39.46768 -37.06278 -35.28734 -34.94942 -32.86088 -31.97505 -30.17506 -29.74381 -28.80246 -27.70529 -26.63850 -24.39007 -23.51672 -23.06331 -22.19206 -21.96885 -20.52936 -18.46950 -18.16845 -17.89334 -17.42101 -16.90820 -16.44856 -16.35446 -16.03538 -15.67791 -15.35483 -14.86607 -14.66745 -14.58091 -14.30851 -14.19990 -14.05249 -13.73588 -13.53071 -13.45547 -13.19423 -12.99890 -12.93777 -12.62173 -12.22266 -12.04960 -11.89996 -11.82332 -11.75509 -11.63155 -11.33562 -11.23144 -10.93282 -10.77681 -10.58017 -10.26756 -10.15680 -10.04872 -9.86855 -9.64119 -9.04414 -8.46715 -8.45090 -7.70701 -6.07473 -4.12115 1.23336 1.80089 2.65438 3.24294 3.27659 3.31472 3.36346 3.40082 3.46749 3.65835 3.84861 3.85768 4.12016 4.19511 4.37536 4.43211 4.54096 4.77788 4.87718 4.94356 5.04788 5.13892 5.20777 5.21945 5.27442 5.37148 5.54390 5.59093 5.63985 5.69990 5.94123 5.96567 6.15777 6.17378 6.24868 6.39561 6.41391 6.70483 6.78721 7.04702 7.40319 7.50248 7.83730 7.89042 8.19912 8.36427 8.87245 9.05387 9.53351 11.00623 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003049 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.266421 B = 9180.718637 C =10301.243049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.506 3.494 14 O -0.522 6.522 15 C 0.035 3.965 16 N -0.521 5.521 17 C 0.024 3.976 18 C 0.124 3.876 19 C 0.300 3.700 20 N -0.534 5.534 21 C 0.202 3.798 22 N -0.309 5.309 23 N -0.370 5.370 24 C 0.081 3.919 25 C 0.254 3.746 26 F -0.191 7.191 27 F -0.193 7.193 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.099 0.901 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.026 0.974 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.219 0.781 44 H 0.139 0.861 45 H 0.123 0.877 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.977 -8.794 19.370 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.398 6.398 15 C -0.095 4.095 16 N -0.246 5.246 17 C -0.123 4.123 18 C -0.006 4.006 19 C 0.023 3.977 20 N -0.262 5.262 21 C -0.101 4.101 22 N -0.135 5.135 23 N -0.161 5.161 24 C -0.044 4.044 25 C 0.199 3.801 26 F -0.172 7.172 27 F -0.175 7.175 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.044 0.956 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.235 0.765 44 H 0.157 0.843 45 H 0.141 0.859 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.876 -7.641 19.454 21.098 hybrid contribution 0.384 -0.595 -0.378 0.803 sum -2.492 -8.236 19.076 20.927 Atomic orbital electron populations 1.22227 0.96820 1.01424 1.02307 1.21415 0.93456 0.84292 1.02652 1.48270 1.63887 1.13240 1.07660 1.19258 0.96279 0.93585 0.77979 1.21456 0.96899 1.31827 1.06212 0.92418 1.24931 0.97814 0.94922 0.96430 1.69941 1.35600 1.33434 1.14383 0.86460 0.84670 0.78075 0.78309 1.19793 1.20990 1.20903 1.19992 0.79099 0.87153 0.84601 1.90670 1.44625 1.17791 1.86675 1.22143 1.00981 0.95826 0.90586 1.61544 1.53822 1.09196 1.00077 1.22564 0.92138 0.92831 1.04799 1.20612 0.99945 0.93665 0.86412 1.24173 0.81629 0.96105 0.95794 1.70523 1.33679 1.13136 1.08848 1.26010 0.85494 0.99282 0.99300 1.78174 1.23392 1.08336 1.03571 1.49921 1.06036 1.33687 1.26428 1.22809 0.93625 0.91915 0.96007 1.22148 0.89370 0.91655 0.76959 1.93052 1.70664 1.76706 1.76790 1.93054 1.87012 1.93608 1.43790 0.93218 0.91967 0.92154 0.89853 0.91914 0.95062 0.93950 0.92775 0.88304 0.91822 0.91359 0.88857 0.95557 0.88687 0.90145 0.76464 0.84320 0.85884 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 10.24 37.16 0.38 -1.60 16 2 C 0.11 1.49 5.93 -4.04 -0.02 1.46 16 3 N -0.60 -11.49 2.46 -175.05 -0.43 -11.92 16 4 C 0.25 6.16 5.16 -5.19 -0.03 6.14 16 5 C -0.53 -14.36 9.39 -34.44 -0.32 -14.68 16 6 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.51 9.43 7.31 -10.99 -0.08 9.35 16 14 O -0.52 -12.19 13.96 5.56 0.08 -12.11 16 15 C 0.04 0.44 3.99 -4.98 -0.02 0.42 16 16 N -0.52 -6.53 4.45 -245.83 -1.09 -7.62 16 17 C 0.02 0.33 9.03 60.06 0.54 0.87 16 18 C 0.12 1.13 4.97 -4.98 -0.02 1.10 16 19 C 0.30 3.36 6.75 -155.70 -1.05 2.31 16 20 N -0.53 -6.51 11.02 -11.97 -0.13 -6.64 16 21 C 0.20 2.26 13.03 -91.81 -1.20 1.06 16 22 N -0.31 -3.90 12.70 29.29 0.37 -3.53 16 23 N -0.37 -4.19 3.62 -58.35 -0.21 -4.40 16 24 C 0.08 0.74 6.45 -4.04 -0.03 0.71 16 25 C 0.25 2.07 5.55 37.16 0.21 2.28 16 26 F -0.19 -1.79 17.34 2.25 0.04 -1.75 16 27 F -0.19 -2.12 17.32 2.25 0.04 -2.08 16 28 H 0.05 0.54 7.22 -51.93 -0.37 0.17 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 34 H 0.04 1.21 7.42 -51.93 -0.39 0.82 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.10 0.97 7.12 -51.93 -0.37 0.60 16 37 H 0.06 0.65 7.16 -51.93 -0.37 0.28 16 38 H 0.07 0.99 7.49 -51.93 -0.39 0.60 16 39 H 0.09 1.57 5.79 -51.93 -0.30 1.27 16 40 H 0.03 0.31 8.01 -51.93 -0.42 -0.11 16 41 H 0.09 0.57 7.58 -51.93 -0.39 0.17 16 42 H 0.08 0.64 7.96 -51.93 -0.41 0.23 16 43 H 0.22 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.14 1.13 7.61 -51.93 -0.40 0.74 16 45 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 392.97 15.07 5.92 5.92 Total: -1.00 -35.61 392.97 -8.08 -43.70 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.64 Total: -1.69 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -1.74 Total: 11.03 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.76 Total: -59.47 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.08 Total: -12.11 kcal Atomic # 9 Polarization: -3.91 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.61 -8.08 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279002661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.813 kcal (2) G-P(sol) polarization free energy of solvation -35.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds