Wall clock time and date at job start Wed Apr 1 2020 04:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46978 * 2 1 4 4 C 1.46506 * 119.99431 * 269.99960 * 3 2 1 5 5 C 1.50699 * 109.47299 * 269.99934 * 4 3 2 6 6 H 1.08005 * 119.99894 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00317 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47075 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47076 * 119.99938 * 9 7 5 12 12 H 1.48507 * 109.47276 * 239.99971 * 9 7 5 13 13 C 1.34774 * 120.00346 * 90.00044 * 3 2 1 14 14 O 1.21278 * 120.00076 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99726 * 359.97438 * 13 3 2 16 16 N 1.46897 * 109.46874 * 179.97438 * 15 13 3 17 17 C 1.46895 * 111.00212 * 66.04534 * 16 15 13 18 18 C 1.46906 * 111.00098 * 190.00127 * 16 15 13 19 19 C 1.50695 * 109.47212 * 164.40242 * 18 16 15 20 20 N 1.30826 * 125.96574 * 95.58831 * 19 18 16 21 21 C 1.33244 * 109.83202 * 180.12345 * 20 19 18 22 22 N 1.30712 * 108.94128 * 359.58792 * 21 20 19 23 23 N 1.34436 * 125.95557 * 275.25483 * 19 18 16 24 24 C 1.46493 * 126.82799 * 0.02562 * 23 19 18 25 25 C 1.53002 * 109.47132 * 265.03840 * 24 23 19 26 26 F 1.39905 * 109.46958 * 174.77610 * 25 24 23 27 27 F 1.39900 * 109.47190 * 294.77014 * 25 24 23 28 28 H 1.08999 * 109.47228 * 299.99990 * 1 2 3 29 29 H 1.08994 * 109.47326 * 60.00130 * 1 2 3 30 30 H 1.09003 * 109.46686 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47228 * 240.00010 * 2 1 3 32 32 H 1.09003 * 109.47122 * 120.00037 * 2 1 3 33 33 H 1.08996 * 109.47437 * 30.00105 * 4 3 2 34 34 H 1.09000 * 109.46831 * 150.00101 * 4 3 2 35 35 H 0.97005 * 119.99627 * 179.97438 * 8 7 5 36 36 H 1.09003 * 109.47159 * 60.00052 * 15 13 3 37 37 H 1.08998 * 109.47065 * 299.99871 * 15 13 3 38 38 H 1.08997 * 109.47597 * 189.21165 * 17 16 15 39 39 H 1.08998 * 109.47389 * 309.21825 * 17 16 15 40 40 H 1.08999 * 109.47177 * 69.21110 * 17 16 15 41 41 H 1.09001 * 109.46706 * 44.39477 * 18 16 15 42 42 H 1.08997 * 109.46800 * 284.40057 * 18 16 15 43 43 H 1.08001 * 125.52738 * 179.85663 * 21 20 19 44 44 H 1.09001 * 109.47428 * 25.03195 * 24 23 19 45 45 H 1.08997 * 109.47626 * 145.03464 * 24 23 19 46 46 H 1.08998 * 109.47173 * 54.77547 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2688 5 6 3.6857 1.8350 -1.7039 6 1 4.3426 1.2302 -1.0963 7 6 4.1493 2.3903 -2.8776 8 7 3.3495 3.1271 -3.6173 9 14 5.9133 2.0962 -3.4172 10 1 6.6007 1.2404 -2.4172 11 1 5.9203 1.4180 -4.7382 12 1 6.6215 3.3971 -3.5250 13 6 2.2430 2.0166 1.1671 14 8 2.6476 3.1599 1.1671 15 6 1.9913 1.3064 2.4723 16 7 2.3102 2.2062 3.5888 17 6 1.3846 3.3462 3.6271 18 6 2.3061 1.4816 4.8667 19 6 2.9958 2.3126 5.9176 20 7 2.4097 3.1095 6.7738 21 6 3.3236 3.6870 7.5527 22 7 4.5086 3.2568 7.2070 23 7 4.3203 2.3597 6.1430 24 6 5.3604 1.6217 5.4222 25 6 5.6890 0.3333 6.1791 26 9 6.5942 -0.4284 5.4322 27 9 6.2579 0.6517 7.4170 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0954 3.1410 -1.1386 35 1 3.6758 3.5182 -4.4429 36 1 2.6212 0.4187 2.5302 37 1 0.9432 1.0127 2.5298 38 1 1.7379 4.0770 4.3545 39 1 1.3367 3.8087 2.6412 40 1 0.3920 2.9989 3.9138 41 1 2.8326 0.5345 4.7489 42 1 1.2775 1.2899 5.1723 43 1 3.1183 4.3924 8.3443 44 1 5.0040 1.3747 4.4222 45 1 6.2567 2.2374 5.3467 46 1 4.7749 -0.2393 6.3358 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279002661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:24 Heat of formation + Delta-G solvation = -53.082682 kcal Electronic energy + Delta-G solvation = -31175.723330 eV Core-core repulsion = 26579.949412 eV Total energy + Delta-G solvation = -4595.773918 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.08437 -48.10544 -43.19547 -40.82852 -38.12519 -36.75285 -35.72564 -34.87268 -32.86632 -31.56387 -30.52689 -30.04317 -28.56297 -28.26278 -25.36231 -24.85386 -24.23329 -23.26688 -22.98544 -21.31250 -19.82730 -18.89582 -18.63409 -18.55273 -18.14905 -17.97498 -17.28118 -17.18800 -16.74947 -16.54871 -16.13482 -15.75324 -15.70735 -15.29610 -15.22575 -15.02349 -14.62146 -14.45874 -14.43071 -14.27062 -14.20099 -13.93011 -13.75764 -13.56005 -13.25408 -13.11058 -12.95877 -12.72111 -12.66841 -12.65391 -12.52050 -12.45734 -12.43355 -12.11097 -11.76071 -11.63372 -11.11726 -10.85430 -10.71802 -10.62733 -10.46694 -9.45525 -9.28883 -8.19712 -6.33853 0.42449 1.06215 1.37295 1.40019 1.51113 1.81481 1.95400 2.30055 2.43732 2.61360 2.90198 3.10074 3.10301 3.17769 3.22405 3.56977 3.69646 3.74667 3.86150 4.13486 4.16777 4.25988 4.30349 4.38497 4.43505 4.47817 4.52269 4.61092 4.65154 4.73471 4.99972 5.05628 5.12075 5.14637 5.17554 5.27417 5.39531 5.46004 5.62752 5.63452 5.81263 5.88230 5.95356 6.10812 6.75921 6.91842 7.02027 7.33296 7.62344 8.87140 Molecular weight = 345.17amu Principal moments of inertia in cm(-1) A = 0.010558 B = 0.003049 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.266421 B = 9180.718637 C =10301.243049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.535 4.535 6 H 0.057 0.943 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.271 1.271 12 H -0.287 1.287 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.052 3.948 16 N -0.541 5.541 17 C 0.036 3.964 18 C 0.126 3.874 19 C 0.296 3.704 20 N -0.555 5.555 21 C 0.198 3.802 22 N -0.341 5.341 23 N -0.373 5.373 24 C 0.078 3.922 25 C 0.257 3.743 26 F -0.198 7.198 27 F -0.212 7.212 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.018 0.982 34 H -0.008 1.008 35 H 0.265 0.735 36 H 0.139 0.861 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.245 0.755 44 H 0.152 0.848 45 H 0.111 0.889 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 -12.024 20.957 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.143 3.857 5 C -0.574 4.574 6 H 0.075 0.925 7 C -0.193 4.193 8 N -0.571 5.571 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.196 1.196 12 H -0.213 1.213 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.078 4.078 16 N -0.267 5.267 17 C -0.112 4.112 18 C -0.003 4.003 19 C 0.019 3.981 20 N -0.283 5.283 21 C -0.104 4.104 22 N -0.168 5.168 23 N -0.164 5.164 24 C -0.046 4.046 25 C 0.202 3.798 26 F -0.179 7.179 27 F -0.194 7.194 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.036 0.964 34 H 0.010 0.990 35 H 0.074 0.926 36 H 0.157 0.843 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.154 0.846 42 H 0.119 0.881 43 H 0.261 0.739 44 H 0.170 0.830 45 H 0.130 0.870 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.092 -10.934 21.063 23.932 hybrid contribution 0.410 0.456 -0.863 1.058 sum -2.682 -10.478 20.200 22.913 Atomic orbital electron populations 1.22165 0.94911 1.03417 1.01516 1.21772 0.95006 0.81281 1.04241 1.48278 1.64175 1.15197 1.06050 1.18618 0.95053 0.91343 0.80680 1.21770 0.97953 1.31469 1.06214 0.92510 1.25843 1.02128 0.94662 0.96660 1.70066 1.37652 1.34495 1.14902 0.85414 0.79362 0.77850 0.78466 1.18732 1.19627 1.21275 1.21215 0.77415 0.86697 0.86356 1.90650 1.47158 1.20682 1.87717 1.22084 1.03825 0.95517 0.86381 1.61347 1.53932 1.09582 1.01819 1.22303 0.93649 0.93331 1.01889 1.20848 1.01549 0.94108 0.83799 1.24642 0.81609 0.95915 0.95919 1.70534 1.34358 1.13784 1.09596 1.26612 0.85008 0.99225 0.99550 1.78122 1.24440 1.09465 1.04759 1.50018 1.06574 1.33614 1.26220 1.22927 0.92934 0.92159 0.96564 1.22405 0.90115 0.91470 0.75777 1.93038 1.71197 1.76736 1.76942 1.93017 1.87464 1.93809 1.45076 0.91932 0.94907 0.88654 0.91329 0.87215 0.96405 0.98978 0.92616 0.84307 0.88446 0.92877 0.92828 0.93312 0.84572 0.88133 0.73877 0.83035 0.87028 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.10 2.51 5.93 86.38 0.51 3.02 16 3 N -0.60 -23.07 2.46 -826.14 -2.03 -25.10 16 4 C 0.26 13.77 5.16 85.63 0.44 14.21 16 5 C -0.54 -29.94 9.39 25.60 0.24 -29.70 16 6 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 9 Si 0.96 44.40 29.54 68.60 2.03 46.42 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.49 18.08 7.31 87.66 0.64 18.72 16 14 O -0.58 -28.25 13.96 -3.02 -0.04 -28.29 16 15 C 0.05 1.06 3.99 85.56 0.34 1.41 16 16 N -0.54 -11.99 4.45 -931.67 -4.14 -16.14 16 17 C 0.04 0.96 9.03 127.69 1.15 2.12 16 18 C 0.13 1.73 4.97 85.55 0.43 2.15 16 19 C 0.30 5.89 6.75 138.22 0.93 6.83 16 20 N -0.55 -12.57 11.02 -191.78 -2.11 -14.68 16 21 C 0.20 4.24 13.03 180.76 2.36 6.59 16 22 N -0.34 -8.37 12.70 -61.24 -0.78 -9.15 16 23 N -0.37 -7.81 3.62 -338.51 -1.23 -9.04 16 24 C 0.08 1.27 6.45 86.38 0.56 1.83 16 25 C 0.26 3.53 5.55 71.98 0.40 3.93 16 26 F -0.20 -3.25 17.34 44.97 0.78 -2.47 16 27 F -0.21 -4.37 17.32 44.97 0.78 -3.59 16 28 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 32 H 0.11 1.76 6.44 -2.39 -0.02 1.75 16 33 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 34 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 35 H 0.26 15.00 8.31 -92.70 -0.77 14.23 16 36 H 0.14 1.80 7.12 -2.39 -0.02 1.79 16 37 H 0.10 1.43 7.16 -2.39 -0.02 1.41 16 38 H 0.05 1.54 7.49 -2.39 -0.02 1.52 16 39 H 0.05 1.86 5.79 -2.39 -0.01 1.85 16 40 H 0.05 1.03 8.01 -2.39 -0.02 1.01 16 41 H 0.14 0.73 7.58 -2.39 -0.02 0.71 16 42 H 0.10 1.06 7.96 -2.39 -0.02 1.04 16 43 H 0.25 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.15 2.04 7.61 -2.39 -0.02 2.02 16 45 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -84.58 392.97 3.73 -80.85 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.00 Total: 7.67 kcal Atomic # 6 Polarization: 20.10 SS G_CDS: 9.20 Total: 29.30 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -10.01 Total: -129.90 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -0.04 Total: -28.29 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 1.56 Total: -6.06 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -84.58 3.73 -80.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279002661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.768 kcal (2) G-P(sol) polarization free energy of solvation -84.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds