Wall clock time and date at job start Wed Apr 1 2020 04:35:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.46940 * 2 1 4 4 C 1.46901 * 111.00223 * 68.02478 * 3 2 1 5 5 C 1.50700 * 109.47247 * 72.06631 * 4 3 2 6 6 O 1.21291 * 119.99633 * 0.44457 * 5 4 3 7 7 N 1.34776 * 120.00218 * 180.43746 * 5 4 3 8 8 C 1.46491 * 120.00259 * 185.01659 * 7 5 4 9 9 C 1.50695 * 109.47227 * 89.99963 * 8 7 5 10 10 H 1.07999 * 119.99946 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00513 * 179.97438 * 9 8 7 12 12 N 1.31510 * 120.00490 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99350 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47146 * 89.99995 * 13 11 9 15 15 H 1.48498 * 109.46886 * 209.99684 * 13 11 9 16 16 H 1.48497 * 109.47317 * 329.99721 * 13 11 9 17 17 C 1.39924 * 119.99520 * 5.01919 * 7 5 4 18 18 C 1.38873 * 120.07417 * 291.30565 * 17 7 5 19 19 C 1.38111 * 119.92963 * 179.79599 * 18 17 7 20 20 C 1.38277 * 120.07084 * 0.48251 * 19 18 17 21 21 C 1.38283 * 120.14319 * 359.74571 * 20 19 18 22 22 C 1.38111 * 120.06663 * 0.02562 * 21 20 19 23 23 C 1.46900 * 110.99914 * 304.06934 * 3 2 1 24 24 H 1.08995 * 110.43712 * 193.48568 * 23 3 2 25 25 C 1.54626 * 110.48677 * 316.17136 * 23 3 2 26 26 C 1.54479 * 101.76849 * 143.47608 * 25 23 3 27 27 N 1.46764 * 105.47188 * 334.58325 * 26 25 23 28 28 C 1.34425 * 111.30020 * 17.01487 * 27 26 25 29 29 O 1.21279 * 124.94231 * 179.62578 * 28 27 26 30 30 H 1.09002 * 109.46658 * 190.84947 * 1 2 3 31 31 H 1.09003 * 109.47125 * 310.84961 * 1 2 3 32 32 H 1.08997 * 109.47126 * 70.85301 * 1 2 3 33 33 H 1.08996 * 109.47496 * 240.00502 * 2 1 3 34 34 H 1.08994 * 109.47637 * 119.99749 * 2 1 3 35 35 H 1.09001 * 109.47101 * 192.07337 * 4 3 2 36 36 H 1.09007 * 109.46893 * 312.06938 * 4 3 2 37 37 H 1.08997 * 109.47424 * 210.00165 * 8 7 5 38 38 H 1.09002 * 109.47141 * 330.00220 * 8 7 5 39 39 H 0.96996 * 120.00253 * 180.02562 * 12 11 9 40 40 H 1.07999 * 120.03183 * 0.02562 * 18 17 7 41 41 H 1.08007 * 119.96121 * 180.22520 * 19 18 17 42 42 H 1.08001 * 119.93231 * 179.76982 * 20 19 18 43 43 H 1.07997 * 119.96426 * 180.02562 * 21 20 19 44 44 H 1.08004 * 120.03113 * 180.02562 * 22 21 20 45 45 H 1.09006 * 110.96750 * 261.59092 * 25 23 3 46 46 H 1.08999 * 110.97227 * 25.35480 * 25 23 3 47 47 H 1.08995 * 110.24950 * 215.58640 * 26 25 23 48 48 H 1.09003 * 110.24565 * 93.58149 * 26 25 23 49 49 H 0.96995 * 124.35289 * 196.99787 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.7113 2.0525 1.2718 5 6 2.5963 1.4974 2.3579 6 8 3.4099 0.6368 2.0965 7 7 2.4837 1.9574 3.6198 8 6 3.4161 1.4990 4.6524 9 6 4.6113 2.4160 4.6930 10 1 4.6701 3.2566 4.0174 11 6 5.6291 2.1827 5.5934 12 7 6.6719 2.9833 5.6291 13 14 5.5269 0.7293 6.7624 14 1 6.1499 -0.4604 6.1287 15 1 6.2466 1.0541 8.0201 16 1 4.1030 0.4389 7.0678 17 6 1.4762 2.8728 3.9433 18 6 1.5255 4.1675 3.4434 19 6 0.5271 5.0674 3.7613 20 6 -0.5154 4.6834 4.5845 21 6 -0.5650 3.3963 5.0878 22 6 0.4277 2.4903 4.7698 23 6 1.4708 2.1374 -1.1360 24 1 2.0116 3.0744 -1.2690 25 6 1.5290 1.2878 -2.4267 26 6 0.2200 1.7010 -3.1352 27 7 -0.6812 2.1447 -2.0652 28 6 -0.0047 2.4021 -0.9325 29 8 -0.5046 2.7896 0.1023 30 1 -0.3633 -1.0093 0.1934 31 1 -0.3633 0.6722 0.7774 32 1 -0.3633 0.3371 -0.9708 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5137 0.8899 35 1 1.8869 3.1236 1.1719 36 1 0.6667 1.8781 1.5297 37 1 2.9180 1.5083 5.6219 38 1 3.7438 0.4852 4.4220 39 1 7.3881 2.8189 6.2623 40 1 2.3417 4.4692 2.8038 41 1 0.5631 6.0734 3.3698 42 1 -1.2930 5.3900 4.8346 43 1 -1.3808 3.0994 5.7301 44 1 0.3882 1.4851 5.1629 45 1 2.3986 1.5520 -3.0286 46 1 1.5269 0.2231 -2.1933 47 1 -0.2098 0.8484 -3.6609 48 1 0.4096 2.5180 -3.8315 49 1 -1.6415 2.2401 -2.1628 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282449725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:54 Heat of formation + Delta-G solvation = -21.384713 kcal Electronic energy + Delta-G solvation = -32128.390574 eV Core-core repulsion = 28055.927962 eV Total energy + Delta-G solvation = -4072.462612 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.45156 -41.26899 -39.53119 -37.85495 -37.20152 -36.40696 -34.76505 -32.12132 -31.87690 -31.60735 -30.98095 -29.68444 -28.43022 -26.84294 -24.66869 -23.94849 -23.46689 -23.13748 -22.24553 -20.82300 -20.35404 -19.14889 -18.52308 -18.38073 -18.09888 -17.46080 -17.25371 -17.06649 -16.46470 -16.04458 -15.80840 -15.56077 -15.38134 -15.05029 -14.90001 -14.73079 -14.49792 -14.32763 -14.14566 -13.96122 -13.90391 -13.77175 -13.55852 -13.50052 -13.24965 -13.00647 -12.80501 -12.61881 -12.49255 -12.31886 -12.25553 -11.98897 -11.93450 -11.76815 -11.48987 -11.22314 -10.92787 -10.85947 -10.09917 -10.00146 -9.84519 -9.27116 -9.18607 -8.36559 -6.42056 0.35190 0.48755 1.29260 1.33328 1.41936 1.47384 1.63855 2.04189 2.28143 2.42311 2.77807 2.87721 2.97093 3.42251 3.55800 3.59646 3.92765 4.00945 4.02807 4.08264 4.10589 4.20462 4.26870 4.33129 4.35440 4.44344 4.55944 4.56638 4.57944 4.68196 4.75228 4.80181 4.84195 4.85056 4.88017 5.05629 5.11237 5.14918 5.30521 5.37105 5.39616 5.51098 5.59257 5.67861 5.72610 5.78985 5.96274 6.03827 6.06701 6.20160 6.57345 6.64331 7.15925 7.24290 7.30783 8.80500 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.004011 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.324437 B = 6978.746898 C = 8347.315082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.041 3.959 3 N -0.509 5.509 4 C 0.058 3.942 5 C 0.509 3.491 6 O -0.556 6.556 7 N -0.564 5.564 8 C 0.231 3.769 9 C -0.536 4.536 10 H 0.027 0.973 11 C 0.016 3.984 12 N -0.942 5.942 13 Si 0.946 3.054 14 H -0.270 1.270 15 H -0.271 1.271 16 H -0.244 1.244 17 C 0.125 3.875 18 C -0.134 4.134 19 C -0.106 4.106 20 C -0.120 4.120 21 C -0.103 4.103 22 C -0.139 4.139 23 C 0.041 3.959 24 H 0.119 0.881 25 C -0.133 4.133 26 C 0.104 3.896 27 N -0.725 5.725 28 C 0.492 3.508 29 O -0.566 6.566 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.028 0.972 39 H 0.270 0.730 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.159 0.841 43 H 0.157 0.843 44 H 0.123 0.877 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.110 0.890 48 H 0.096 0.904 49 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 -1.778 -17.000 27.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.086 4.086 3 N -0.232 5.232 4 C -0.073 4.073 5 C 0.298 3.702 6 O -0.434 6.434 7 N -0.292 5.292 8 C 0.110 3.890 9 C -0.575 4.575 10 H 0.046 0.954 11 C -0.182 4.182 12 N -0.581 5.581 13 Si 0.768 3.232 14 H -0.195 1.195 15 H -0.196 1.196 16 H -0.167 1.167 17 C 0.035 3.965 18 C -0.154 4.154 19 C -0.125 4.125 20 C -0.137 4.137 21 C -0.122 4.122 22 C -0.159 4.159 23 C -0.071 4.071 24 H 0.136 0.864 25 C -0.170 4.170 26 C -0.020 4.020 27 N -0.381 5.381 28 C 0.278 3.722 29 O -0.445 6.445 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.164 0.836 42 H 0.177 0.823 43 H 0.175 0.825 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.128 0.872 48 H 0.114 0.886 49 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -20.093 -2.058 -16.579 26.131 hybrid contribution -0.203 -0.150 0.862 0.898 sum -20.296 -2.208 -15.716 25.764 Atomic orbital electron populations 1.22850 0.97268 1.03056 1.03077 1.22401 0.93241 0.89116 1.03810 1.62073 1.57728 1.02728 1.00691 1.21919 0.97963 0.98880 0.88493 1.21206 0.83864 0.81903 0.83222 1.90594 1.38357 1.32817 1.81647 1.45521 1.30361 1.43401 1.09880 1.19389 0.87871 0.94939 0.86836 1.21434 1.04148 1.12263 1.19636 0.95419 1.25788 0.94169 0.99443 0.98826 1.70034 1.09791 1.40014 1.38289 0.85747 0.80136 0.78986 0.78341 1.19534 1.19571 1.16710 1.17957 0.89249 0.89592 0.99742 1.21341 0.99563 0.92619 1.01887 1.21297 0.93563 0.99629 0.97975 1.21536 0.98677 0.96767 0.96758 1.21352 0.98124 0.93215 0.99462 1.21402 0.94015 1.01005 0.99453 1.22863 0.90785 1.00424 0.93022 0.86351 1.23077 0.99846 1.01163 0.92929 1.22342 0.88508 1.01941 0.89189 1.46334 1.11173 1.68120 1.12475 1.22000 0.91572 0.75203 0.83470 1.90747 1.75717 1.48117 1.29877 0.90942 0.93887 0.89565 0.87139 0.92566 0.88921 0.89362 0.93947 0.95419 0.92113 0.87973 0.83593 0.82316 0.82500 0.85861 0.86513 0.88355 0.87189 0.88587 0.74445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.84 8.16 71.98 0.59 -4.26 16 2 C 0.04 1.15 5.19 86.30 0.45 1.60 16 3 N -0.51 -15.81 4.52 -875.55 -3.95 -19.77 16 4 C 0.06 2.16 2.73 85.56 0.23 2.40 16 5 C 0.51 23.73 7.24 87.66 0.63 24.37 16 6 O -0.56 -29.46 14.46 -3.06 -0.04 -29.51 16 7 N -0.56 -26.76 2.50 -635.33 -1.59 -28.35 16 8 C 0.23 12.31 4.22 85.63 0.36 12.68 16 9 C -0.54 -33.53 9.94 25.60 0.25 -33.27 16 10 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 11 C 0.02 0.99 5.47 84.66 0.46 1.45 16 12 N -0.94 -61.26 13.96 21.45 0.30 -60.96 16 13 Si 0.95 46.22 27.47 68.60 1.88 48.10 16 14 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 15 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.24 -10.94 6.54 99.48 0.65 -10.29 16 17 C 0.13 5.09 4.47 38.15 0.17 5.26 16 18 C -0.13 -5.08 8.40 22.39 0.19 -4.89 16 19 C -0.11 -3.11 10.04 22.25 0.22 -2.89 16 20 C -0.12 -2.96 10.04 22.29 0.22 -2.74 16 21 C -0.10 -2.72 10.04 22.25 0.22 -2.50 16 22 C -0.14 -4.74 9.71 22.39 0.22 -4.52 16 23 C 0.04 0.90 3.22 44.91 0.14 1.04 16 24 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 25 C -0.13 -1.58 6.05 31.65 0.19 -1.38 16 26 C 0.10 0.68 7.51 86.83 0.65 1.33 16 27 N -0.72 -9.49 5.22 -459.80 -2.40 -11.89 16 28 C 0.49 11.17 4.91 87.90 0.43 11.60 16 29 O -0.57 -17.69 13.95 -3.03 -0.04 -17.73 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.04 1.29 4.86 -2.39 -0.01 1.27 16 32 H 0.09 1.63 4.17 -2.39 -0.01 1.62 16 33 H 0.11 2.39 5.89 -2.39 -0.01 2.38 16 34 H 0.06 1.98 6.38 -2.39 -0.02 1.97 16 35 H 0.09 3.52 6.54 -2.39 -0.02 3.51 16 36 H 0.09 3.33 4.35 -2.38 -0.01 3.32 16 37 H 0.04 2.15 6.93 -2.39 -0.02 2.13 16 38 H 0.03 1.54 6.79 -2.39 -0.02 1.53 16 39 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 40 H 0.10 4.15 7.61 -2.91 -0.02 4.12 16 41 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 45 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.10 1.20 4.86 -2.39 -0.01 1.19 16 47 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 48 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.42 4.26 8.96 -92.71 -0.83 3.43 16 Total: -1.00 -86.94 376.82 -0.09 -87.03 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.11 Total: 27.81 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 5.65 Total: 5.27 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -7.64 Total: -120.97 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -0.09 Total: -47.24 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.88 Total: 48.10 kcal Total: -86.94 -0.09 -87.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282449725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.642 kcal (2) G-P(sol) polarization free energy of solvation -86.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds