Wall clock time and date at job start Wed Apr 1 2020 05:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47065 * 2 1 4 4 C 1.36935 * 119.99627 * 275.77512 * 3 2 1 5 5 H 1.08007 * 119.99854 * 324.15130 * 4 3 2 6 6 C 1.38811 * 119.99769 * 144.15344 * 4 3 2 7 7 N 1.31616 * 120.00193 * 346.39175 * 6 4 3 8 8 Si 1.86803 * 119.99684 * 166.38697 * 6 4 3 9 9 H 1.48494 * 109.47470 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46792 * 120.00216 * 8 6 4 11 11 H 1.48501 * 109.47089 * 239.99562 * 8 6 4 12 12 C 1.46491 * 119.99820 * 95.77784 * 3 2 1 13 13 H 1.09007 * 109.47024 * 180.29522 * 12 3 2 14 14 C 1.53005 * 109.47427 * 300.29165 * 12 3 2 15 15 C 1.50695 * 109.47724 * 60.29647 * 12 3 2 16 16 O 1.21289 * 119.99618 * 359.97438 * 15 12 3 17 17 N 1.34775 * 120.00516 * 179.97438 * 15 12 3 18 18 C 1.39921 * 120.00476 * 184.76197 * 17 15 12 19 19 C 1.38947 * 120.03220 * 322.41363 * 18 17 15 20 20 C 1.38136 * 120.07036 * 180.02562 * 19 18 17 21 21 C 1.38186 * 120.13805 * 359.67251 * 20 19 18 22 22 C 1.38900 * 120.06877 * 0.60210 * 21 20 19 23 23 N 1.39923 * 120.03434 * 179.70193 * 22 21 20 24 24 C 1.46762 * 124.34902 * 354.16354 * 23 22 21 25 25 C 1.54482 * 105.47428 * 197.04228 * 24 23 22 26 26 C 1.54629 * 101.76668 * 334.58635 * 25 24 23 27 27 C 1.34417 * 124.35118 * 174.19870 * 23 22 21 28 28 O 1.21286 * 124.94236 * 359.52319 * 27 23 22 29 29 C 1.38729 * 120.03867 * 142.43369 * 18 17 15 30 30 H 1.08996 * 109.46987 * 60.00330 * 1 2 3 31 31 H 1.09007 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47370 * 300.00445 * 1 2 3 33 33 H 1.08997 * 109.47282 * 239.99352 * 2 1 3 34 34 H 1.09010 * 109.46751 * 119.99676 * 2 1 3 35 35 H 0.97001 * 119.99983 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46978 * 300.00791 * 14 12 3 37 37 H 1.09000 * 109.46650 * 60.00557 * 14 12 3 38 38 H 1.08995 * 109.47096 * 180.02562 * 14 12 3 39 39 H 0.97005 * 119.99689 * 4.75920 * 17 15 12 40 40 H 1.08000 * 119.96834 * 0.02562 * 19 18 17 41 41 H 1.08001 * 119.93179 * 179.97438 * 20 19 18 42 42 H 1.08000 * 119.96173 * 180.32555 * 21 20 19 43 43 H 1.09003 * 110.24653 * 78.04331 * 24 23 22 44 44 H 1.09002 * 110.25032 * 316.04296 * 24 23 22 45 45 H 1.09005 * 110.96893 * 216.46870 * 25 24 23 46 46 H 1.09003 * 110.96873 * 92.70547 * 25 24 23 47 47 H 1.08990 * 110.48877 * 143.47479 * 26 25 24 48 48 H 1.09003 * 110.48703 * 266.12134 * 26 25 24 49 49 H 1.07995 * 120.06752 * 0.02562 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1340 2.0665 -1.1799 5 1 2.4386 1.5487 -2.0775 6 6 1.8598 3.4266 -1.2224 7 7 1.2386 4.0044 -0.2161 8 14 2.3724 4.4367 -2.7077 9 1 3.0489 3.5575 -3.6948 10 1 1.1700 5.0462 -3.3307 11 1 3.3052 5.5096 -2.2786 12 6 2.3828 2.0292 1.2622 13 1 2.7162 3.0481 1.0646 14 6 1.1659 2.0616 2.1891 15 6 3.4956 1.2556 1.9211 16 8 3.9401 0.2605 1.3889 17 7 3.9969 1.6694 3.1018 18 6 5.0953 1.0105 3.6650 19 6 5.2097 -0.3698 3.5549 20 6 6.2934 -1.0211 4.1111 21 6 7.2704 -0.3019 4.7727 22 6 7.1590 1.0776 4.8912 23 7 8.1456 1.8044 5.5667 24 6 9.2705 1.1997 6.2897 25 6 9.8160 2.3143 7.2098 26 6 9.3785 3.5900 6.4533 27 6 8.1844 3.1462 5.6374 28 8 7.3796 3.8925 5.1214 29 6 6.0711 1.7347 4.3344 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.0467 4.9548 -0.2460 36 1 0.3610 2.6212 1.7125 37 1 0.8326 1.0428 2.3867 38 1 1.4371 2.5441 3.1280 39 1 3.5962 2.4240 3.5610 40 1 4.4505 -0.9342 3.0338 41 1 6.3799 -2.0942 4.0245 42 1 8.1192 -0.8134 5.2020 43 1 10.0408 0.8788 5.5885 44 1 8.9256 0.3543 6.8851 45 1 10.9019 2.2597 7.2871 46 1 9.3534 2.2675 8.1957 47 1 9.0908 4.3710 7.1569 48 1 10.1782 3.9393 5.8001 49 1 5.9840 2.8076 4.4220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298106241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:40 Heat of formation + Delta-G solvation = -8.322091 kcal Electronic energy + Delta-G solvation = -30702.605362 eV Core-core repulsion = 26630.709188 eV Total energy + Delta-G solvation = -4071.896174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.24047 -39.83876 -38.10750 -36.84053 -35.78155 -34.29298 -33.03470 -31.78733 -30.96981 -29.56100 -28.72098 -28.22339 -27.89070 -24.23624 -23.70899 -23.20209 -22.72373 -21.40073 -20.77177 -19.95649 -19.03657 -17.94678 -17.14228 -16.99309 -16.49036 -16.11950 -15.64415 -15.53730 -14.77567 -14.51088 -14.22855 -14.20585 -13.91987 -13.82980 -13.71704 -13.42610 -13.34561 -13.12105 -13.06052 -12.54098 -12.31184 -12.04163 -11.87145 -11.73878 -11.61986 -11.47611 -11.44584 -11.29840 -11.12851 -10.89334 -10.72169 -10.52038 -10.26404 -10.12653 -9.85536 -9.77233 -9.66476 -9.52751 -8.80725 -8.53376 -8.15625 -7.69609 -6.59851 -5.86524 -3.35468 1.34416 1.48962 2.42200 2.56154 3.34893 3.40516 3.44963 3.48519 3.64030 3.89492 3.97426 4.05163 4.33932 4.48413 4.55240 4.97453 5.01152 5.04443 5.14087 5.22203 5.29694 5.33523 5.43071 5.46774 5.48854 5.55293 5.61556 5.76515 5.90791 6.15253 6.25031 6.30135 6.39476 6.44017 6.52035 6.60433 6.63067 6.65624 6.68958 6.80930 6.86455 6.97975 7.10689 7.18951 7.33812 7.40666 7.44382 7.82450 7.83547 7.97548 8.48730 8.87053 9.19591 9.78192 10.35885 11.21281 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014120 B = 0.002826 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.584643 B = 9905.714796 C =11085.311194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.150 3.850 3 N -0.561 5.561 4 C -0.251 4.251 5 H 0.064 0.936 6 C 0.009 3.991 7 N -0.898 5.898 8 Si 0.902 3.098 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.288 1.288 12 C 0.178 3.822 13 H 0.121 0.879 14 C -0.142 4.142 15 C 0.490 3.510 16 O -0.521 6.521 17 N -0.685 5.685 18 C 0.189 3.811 19 C -0.143 4.143 20 C -0.077 4.077 21 C -0.183 4.183 22 C 0.175 3.825 23 N -0.558 5.558 24 C 0.096 3.904 25 C -0.131 4.131 26 C -0.153 4.153 27 C 0.511 3.489 28 O -0.506 6.506 29 C -0.189 4.189 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.043 0.957 35 H 0.255 0.745 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.408 0.592 40 H 0.138 0.862 41 H 0.126 0.874 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.108 0.892 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.991 -5.255 18.368 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 N -0.280 5.280 4 C -0.381 4.381 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.541 5.541 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.215 1.215 12 C 0.066 3.934 13 H 0.139 0.861 14 C -0.201 4.201 15 C 0.278 3.722 16 O -0.394 6.394 17 N -0.331 5.331 18 C 0.092 3.908 19 C -0.164 4.164 20 C -0.097 4.097 21 C -0.204 4.204 22 C 0.081 3.919 23 N -0.282 5.282 24 C -0.026 4.026 25 C -0.169 4.169 26 C -0.193 4.193 27 C 0.300 3.700 28 O -0.381 6.381 29 C -0.212 4.212 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.244 0.756 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.104 0.896 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 14.755 -5.373 17.586 23.576 hybrid contribution 0.216 0.950 -0.495 1.093 sum 14.971 -4.422 17.091 23.147 Atomic orbital electron populations 1.22399 0.99782 0.98342 1.02036 1.20775 0.91222 0.86643 0.98968 1.43473 1.72173 1.10331 1.02023 1.19185 1.39422 0.91511 0.88000 0.91818 1.25217 0.97677 0.98481 0.97603 1.69924 1.41653 1.10756 1.31758 0.86223 0.77933 0.80125 0.82522 1.20145 1.21555 1.21485 1.20278 0.89169 0.97610 0.86346 0.86143 1.22155 1.00521 1.00117 0.97273 1.23695 0.84432 0.85671 0.78395 1.90566 1.60144 1.25810 1.62892 1.44231 1.30798 1.35242 1.22879 1.17732 0.88203 0.91212 0.93625 1.21280 1.00372 0.93010 1.01730 1.20776 0.93237 0.99530 0.96115 1.20591 1.01743 0.91586 1.06490 1.17384 0.88422 0.90759 0.95290 1.45754 1.25072 1.07026 1.50390 1.22238 0.88125 0.97244 0.95034 1.22623 1.02527 0.92935 0.98804 1.22347 0.97315 0.99536 1.00149 1.21103 0.86778 0.81545 0.80584 1.90677 1.43017 1.57160 1.47210 1.21308 0.93249 1.02123 1.04496 0.92800 0.95218 0.93318 0.94416 0.93852 0.93488 0.89272 0.94533 0.94767 0.75589 0.84462 0.85617 0.86188 0.90164 0.89455 0.88656 0.89608 0.87533 0.87361 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 10.01 37.16 0.37 -3.05 16 2 C 0.15 3.41 5.07 -4.04 -0.02 3.39 16 3 N -0.56 -14.17 2.13 -166.98 -0.36 -14.52 16 4 C -0.25 -6.92 9.52 -15.06 -0.14 -7.06 16 5 H 0.06 1.79 7.87 -52.48 -0.41 1.38 16 6 C 0.01 0.26 4.93 -17.43 -0.09 0.17 16 7 N -0.90 -24.38 10.52 55.49 0.58 -23.79 16 8 Si 0.90 21.69 29.58 -169.99 -5.03 16.66 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 C 0.18 4.10 2.18 -69.09 -0.15 3.95 16 13 H 0.12 3.09 6.10 -51.93 -0.32 2.77 16 14 C -0.14 -2.88 7.99 37.16 0.30 -2.58 16 15 C 0.49 10.58 6.69 -10.99 -0.07 10.50 16 16 O -0.52 -12.43 12.23 5.55 0.07 -12.36 16 17 N -0.68 -12.44 5.25 -9.88 -0.05 -12.49 16 18 C 0.19 3.30 6.25 -83.72 -0.52 2.78 16 19 C -0.14 -2.38 8.68 -39.36 -0.34 -2.72 16 20 C -0.08 -1.04 10.03 -39.64 -0.40 -1.43 16 21 C -0.18 -2.22 9.40 -39.36 -0.37 -2.59 16 22 C 0.17 2.43 6.59 -83.72 -0.55 1.87 16 23 N -0.56 -6.19 3.14 -112.29 -0.35 -6.54 16 24 C 0.10 0.58 6.26 -3.12 -0.02 0.56 16 25 C -0.13 -0.51 7.18 -25.10 -0.18 -0.69 16 26 C -0.15 -0.99 6.86 -26.74 -0.18 -1.18 16 27 C 0.51 6.12 7.92 -10.86 -0.09 6.03 16 28 O -0.51 -8.27 14.81 5.55 0.08 -8.18 16 29 C -0.19 -3.11 9.20 -39.21 -0.36 -3.47 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.05 1.00 6.09 -51.93 -0.32 0.68 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.04 0.97 6.48 -51.92 -0.34 0.63 16 35 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 36 H 0.09 2.04 7.35 -51.93 -0.38 1.65 16 37 H 0.04 0.71 6.62 -51.93 -0.34 0.36 16 38 H 0.03 0.58 7.47 -51.93 -0.39 0.20 16 39 H 0.41 6.50 8.12 -40.82 -0.33 6.17 16 40 H 0.14 2.51 6.41 -52.49 -0.34 2.17 16 41 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.07 7.01 -52.49 -0.37 0.70 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.42 7.70 -51.93 -0.40 0.03 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.16 2.73 5.25 -52.49 -0.28 2.45 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -33.35 387.65 -9.18 -42.53 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -7.14 Total: 8.38 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -2.82 Total: 4.48 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.18 Total: -57.34 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: 0.15 Total: -20.55 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.35 -9.18 -42.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298106241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.207 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds